BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0079.0003.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001204501.1| cbb3-type cytochrome c oxidase subunit II [B...   170   7e-41
ref|YP_001238832.1| cbb3-type cytochrome c oxidase subunit II [B...   167   5e-40
ref|NP_769404.1| cbb3-type cytochrome c oxidase subunit II [Brad...   167   5e-40
ref|YP_529912.1| cbb3-type cytochrome c oxidase subunit II [Rhod...   167   6e-40
ref|ZP_08628817.1| cytochrome c oxidase subunit CcoO [Bradyrhizo...   162   2e-38

>ref|YP_001204501.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium sp. ORS
           278]
 emb|CAL76264.1| cytochrome-c oxidase fixO chain [Bradyrhizobium sp. ORS 278]
          Length = 249

 Score =  170 bits (430), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 90/105 (85%)

Query: 1   MPGYPALARTELDPSDATAHLRTNRAVGVPYTDEQIANAAADLKAQVDPDSPGSDPFQKR 60
           MPGYP L  TEL+  +   HL+T RAVGVPYTD+QIANAAADLKAQVDPD PG++   KR
Sbjct: 145 MPGYPFLKETELNADNVADHLKTLRAVGVPYTDDQIANAAADLKAQVDPDGPGAEALTKR 204

Query: 61  YPKAAVRNFDGKAGNPTELDALIAYLQMLGTLVDFKLYNEKANLR 105
           YPKA VRNFDGKAG PTE+DAL+AYLQMLGTLVDFK+YNEKANLR
Sbjct: 205 YPKAVVRNFDGKAGAPTEMDALVAYLQMLGTLVDFKIYNEKANLR 249


>ref|YP_001238832.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ34926.1| cytochrome-c oxidase fixO chain [Bradyrhizobium sp. BTAi1]
          Length = 244

 Score =  167 bits (423), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 89/105 (84%)

Query: 1   MPGYPALARTELDPSDATAHLRTNRAVGVPYTDEQIANAAADLKAQVDPDSPGSDPFQKR 60
           MPGYP L  TEL+  +   HL+T RAVGVPYTD+QIANAAADLKAQVDPD  G++   KR
Sbjct: 140 MPGYPFLKETELNADNVADHLKTLRAVGVPYTDDQIANAAADLKAQVDPDGAGAEALTKR 199

Query: 61  YPKAAVRNFDGKAGNPTELDALIAYLQMLGTLVDFKLYNEKANLR 105
           YPKA VRNFDGKAG PTE+DAL+AYLQMLGTLVDFK+YNEKANLR
Sbjct: 200 YPKAVVRNFDGKAGAPTEMDALVAYLQMLGTLVDFKIYNEKANLR 244


>ref|NP_769404.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium japonicum
           USDA 110]
 gb|AAA26204.1| transmembrane protein [Bradyrhizobium japonicum]
 emb|CAA06280.1| FixO protein [Bradyrhizobium japonicum]
 dbj|BAC48029.1| cytochrome-c oxidase [Bradyrhizobium japonicum USDA 110]
          Length = 244

 Score =  167 bits (423), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 88/105 (83%)

Query: 1   MPGYPALARTELDPSDATAHLRTNRAVGVPYTDEQIANAAADLKAQVDPDSPGSDPFQKR 60
           MPGYP L+ TE+DP     H+RT R VGVPYTD+QIANA+ADLKAQ DPD+ G+D F KR
Sbjct: 140 MPGYPFLSATEVDPDTIADHMRTLRTVGVPYTDDQIANASADLKAQADPDNAGADAFNKR 199

Query: 61  YPKAAVRNFDGKAGNPTELDALIAYLQMLGTLVDFKLYNEKANLR 105
           Y KA VRNFDGK G PTE+DALIAYLQMLGTLVDFK+YNEKANLR
Sbjct: 200 YAKAVVRNFDGKTGTPTEMDALIAYLQMLGTLVDFKIYNEKANLR 244


>ref|YP_529912.1| cbb3-type cytochrome c oxidase subunit II [Rhodopseudomonas
           palustris BisB18]
 gb|ABD85593.1| cytochrome c oxidase, cbb3-type, subunit II [Rhodopseudomonas
           palustris BisB18]
          Length = 245

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 89/105 (84%)

Query: 1   MPGYPALARTELDPSDATAHLRTNRAVGVPYTDEQIANAAADLKAQVDPDSPGSDPFQKR 60
           MPGY  LARTE+D      HLRTNR VGVPYTD++IANA+AD+KAQV+PD+P +    KR
Sbjct: 141 MPGYAFLARTEVDTDHIADHLRTNRIVGVPYTDDEIANASADMKAQVNPDTPEAAELLKR 200

Query: 61  YPKAAVRNFDGKAGNPTELDALIAYLQMLGTLVDFKLYNEKANLR 105
           YPKA VRNFDGK GNPTELDALI+YLQMLGTLVDFKLYNEKANLR
Sbjct: 201 YPKAVVRNFDGKDGNPTELDALISYLQMLGTLVDFKLYNEKANLR 245


>ref|ZP_08628817.1| cytochrome c oxidase subunit CcoO [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP08176.1| cytochrome c oxidase subunit CcoO [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 244

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 86/105 (81%)

Query: 1   MPGYPALARTELDPSDATAHLRTNRAVGVPYTDEQIANAAADLKAQVDPDSPGSDPFQKR 60
           MPGYP L+ TE+D S    HL+ NR VGVPY+DEQIANA +DL+AQ DPD+   D  QKR
Sbjct: 140 MPGYPFLSETEVDTSTIAGHLQANRTVGVPYSDEQIANAISDLQAQADPDNGDVDALQKR 199

Query: 61  YPKAAVRNFDGKAGNPTELDALIAYLQMLGTLVDFKLYNEKANLR 105
           YPKA  RNFDGK GNPTE+DAL+AYLQMLGTLVDFKLY+EKANLR
Sbjct: 200 YPKAVARNFDGKPGNPTEMDALVAYLQMLGTLVDFKLYDEKANLR 244