BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0079.0002.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001204501.1| cbb3-type cytochrome c oxidase subunit II [B...    86   2e-15
ref|YP_001238832.1| cbb3-type cytochrome c oxidase subunit II [B...    83   1e-14
ref|NP_769404.1| cbb3-type cytochrome c oxidase subunit II [Brad...    82   2e-14
ref|YP_529912.1| cbb3-type cytochrome c oxidase subunit II [Rhod...    81   4e-14
ref|ZP_08628817.1| cytochrome c oxidase subunit CcoO [Bradyrhizo...    81   5e-14

>ref|YP_001204501.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium sp. ORS
           278]
 emb|CAL76264.1| cytochrome-c oxidase fixO chain [Bradyrhizobium sp. ORS 278]
          Length = 249

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 47/55 (85%)

Query: 1   VMPGYPSLAKTELDPSDVAAHLRTNRAVGVPYTDEQIANAVADLKAQVDPDSPGS 55
           +MPGYP L +TEL+  +VA HL+T RAVGVPYTD+QIANA ADLKAQVDPD PG+
Sbjct: 144 IMPGYPFLKETELNADNVADHLKTLRAVGVPYTDDQIANAAADLKAQVDPDGPGA 198


>ref|YP_001238832.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ34926.1| cytochrome-c oxidase fixO chain [Bradyrhizobium sp. BTAi1]
          Length = 244

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 46/55 (83%)

Query: 1   VMPGYPSLAKTELDPSDVAAHLRTNRAVGVPYTDEQIANAVADLKAQVDPDSPGS 55
           +MPGYP L +TEL+  +VA HL+T RAVGVPYTD+QIANA ADLKAQVDPD  G+
Sbjct: 139 IMPGYPFLKETELNADNVADHLKTLRAVGVPYTDDQIANAAADLKAQVDPDGAGA 193


>ref|NP_769404.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium japonicum
           USDA 110]
 gb|AAA26204.1| transmembrane protein [Bradyrhizobium japonicum]
 emb|CAA06280.1| FixO protein [Bradyrhizobium japonicum]
 dbj|BAC48029.1| cytochrome-c oxidase [Bradyrhizobium japonicum USDA 110]
          Length = 244

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 45/55 (81%)

Query: 1   VMPGYPSLAKTELDPSDVAAHLRTNRAVGVPYTDEQIANAVADLKAQVDPDSPGS 55
           VMPGYP L+ TE+DP  +A H+RT R VGVPYTD+QIANA ADLKAQ DPD+ G+
Sbjct: 139 VMPGYPFLSATEVDPDTIADHMRTLRTVGVPYTDDQIANASADLKAQADPDNAGA 193


>ref|YP_529912.1| cbb3-type cytochrome c oxidase subunit II [Rhodopseudomonas
           palustris BisB18]
 gb|ABD85593.1| cytochrome c oxidase, cbb3-type, subunit II [Rhodopseudomonas
           palustris BisB18]
          Length = 245

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 1   VMPGYPSLAKTELDPSDVAAHLRTNRAVGVPYTDEQIANAVADLKAQVDPDSP 53
           VMPGY  LA+TE+D   +A HLRTNR VGVPYTD++IANA AD+KAQV+PD+P
Sbjct: 140 VMPGYAFLARTEVDTDHIADHLRTNRIVGVPYTDDEIANASADMKAQVNPDTP 192


>ref|ZP_08628817.1| cytochrome c oxidase subunit CcoO [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP08176.1| cytochrome c oxidase subunit CcoO [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 244

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 45/52 (86%)

Query: 1   VMPGYPSLAKTELDPSDVAAHLRTNRAVGVPYTDEQIANAVADLKAQVDPDS 52
           VMPGYP L++TE+D S +A HL+ NR VGVPY+DEQIANA++DL+AQ DPD+
Sbjct: 139 VMPGYPFLSETEVDTSTIAGHLQANRTVGVPYSDEQIANAISDLQAQADPDN 190