BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0079.0001.p (641 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001238831.1| cbb3-type cytochrome c oxidase subunit I [Br... 698 0.0 ref|YP_001204500.1| cbb3-type cytochrome c oxidase subunit I [Br... 697 0.0 ref|NP_769403.1| cbb3-type cytochrome c oxidase subunit I [Brady... 696 0.0 ref|ZP_08628816.1| cytochrome c oxidase subunit CcoN [Bradyrhizo... 689 0.0 ref|YP_529913.1| cbb3-type cytochrome c oxidase subunit I [Rhodo... 677 0.0 >ref|YP_001238831.1| cbb3-type cytochrome c oxidase subunit I [Bradyrhizobium sp. BTAi1] gb|ABQ34925.1| Cytochrome c oxidase polypeptide I [Bradyrhizobium sp. BTAi1] Length = 539 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/368 (91%), Positives = 354/368 (96%), Gaps = 3/368 (0%) Query: 1 MAMFWGIAGFTVGLMIAMQLAWPALNFDLPWTTFGRLRPLHTSAVIFAFGGNVLIATSFY 60 MAMFWGIAGF VGL+IA QLAWPALNFDLPWT+FGRLRPLHTSAVIFAFGGNVL+ATSFY Sbjct: 81 MAMFWGIAGFAVGLIIASQLAWPALNFDLPWTSFGRLRPLHTSAVIFAFGGNVLLATSFY 140 Query: 61 VVQKTCRTRLAGDLSPWFVVVGYNFFILVAGTGYLLGVTQSKEYAEPEWYADFWLTIVWV 120 VVQ+TCR RLAGDL+PWFVV+GYNFFIL+AGTGYLLGVT+ KEYAEPEWY+D WLTIVWV Sbjct: 141 VVQRTCRVRLAGDLAPWFVVIGYNFFILIAGTGYLLGVTEGKEYAEPEWYSDLWLTIVWV 200 Query: 121 TYLLVFLMTLVKRKEPHIFVANWFYLAFIITIAVLHLGNNPALPVSFLGSKSYIAWGGVQ 180 YLLVFL+T++KRKEPHIFVANWFYLAFI+TIAVLHLGNNPALPVSF GSKSYIAWGGVQ Sbjct: 201 VYLLVFLVTVIKRKEPHIFVANWFYLAFIVTIAVLHLGNNPALPVSFFGSKSYIAWGGVQ 260 Query: 181 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH 240 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH Sbjct: 261 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH 320 Query: 241 HLHYTALPDWAQTLGMTFSIMLWMPSWGGMINGMMTLSGAWDKLRTDPVLRMMVVSVAFY 300 HLHYTALPDW QTLGMTFSIMLWMPSWGGMING+MTLSGAWDKLRTDPVLRM+VVSVAFY Sbjct: 321 HLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMLVVSVAFY 380 Query: 301 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLIPWLWNRQLYXG 360 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCL+PW+WNR+ G Sbjct: 381 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLVPWIWNRK---G 437 Query: 361 LGRLRLVR 368 L L+LV Sbjct: 438 LYSLKLVN 445 >ref|YP_001204500.1| cbb3-type cytochrome c oxidase subunit I [Bradyrhizobium sp. ORS 278] emb|CAL76263.1| Cytochrome c oxidase polypeptide I; fixN homolog [Bradyrhizobium sp. ORS 278] Length = 564 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/368 (91%), Positives = 353/368 (95%), Gaps = 3/368 (0%) Query: 1 MAMFWGIAGFTVGLMIAMQLAWPALNFDLPWTTFGRLRPLHTSAVIFAFGGNVLIATSFY 60 MAMFWGIAGF VGL+IA QLAWPALNFDLPWT+FGRLRPLHTSAVIFAFGGNVL+ATSFY Sbjct: 106 MAMFWGIAGFAVGLIIASQLAWPALNFDLPWTSFGRLRPLHTSAVIFAFGGNVLLATSFY 165 Query: 61 VVQKTCRTRLAGDLSPWFVVVGYNFFILVAGTGYLLGVTQSKEYAEPEWYADFWLTIVWV 120 VVQ+TCR RLAGDL+PWFVV+GYNFFIL+AGTGYLLGVT+ KEYAEPEWY+D WLTIVWV Sbjct: 166 VVQRTCRVRLAGDLAPWFVVIGYNFFILIAGTGYLLGVTEGKEYAEPEWYSDLWLTIVWV 225 Query: 121 TYLLVFLMTLVKRKEPHIFVANWFYLAFIITIAVLHLGNNPALPVSFLGSKSYIAWGGVQ 180 YLLVFL T++KRKEPHIFVANWFYLAFI+TIAVLHLGNNPALPVSF GSKSYIAWGGVQ Sbjct: 226 VYLLVFLTTIIKRKEPHIFVANWFYLAFIVTIAVLHLGNNPALPVSFFGSKSYIAWGGVQ 285 Query: 181 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH 240 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH Sbjct: 286 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH 345 Query: 241 HLHYTALPDWAQTLGMTFSIMLWMPSWGGMINGMMTLSGAWDKLRTDPVLRMMVVSVAFY 300 HLHYTALPDW QTLGMTFSIMLWMPSWGGMING+MTLSGAWDKLRTDPVLRM+VVSVAFY Sbjct: 346 HLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMLVVSVAFY 405 Query: 301 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLIPWLWNRQLYXG 360 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCL+PW+WNR+ G Sbjct: 406 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLVPWIWNRK---G 462 Query: 361 LGRLRLVR 368 L L+LV Sbjct: 463 LYSLKLVN 470 >ref|NP_769403.1| cbb3-type cytochrome c oxidase subunit I [Bradyrhizobium japonicum USDA 110] sp|Q03073.1|FIXN_BRAJA RecName: Full=Cytochrome c oxidase subunit 1 homolog, bacteroid; AltName: Full=Cytochrome CBB3 subunit 1; AltName: Full=Cytochrome c oxidase polypeptide I homolog; AltName: Full=Heme B/copper cytochrome c oxidase subunit gb|AAA26203.1| membrane protein [Bradyrhizobium japonicum] emb|CAA06279.1| FixN protein [Bradyrhizobium japonicum] dbj|BAC48028.1| cytochrome-c oxidase [Bradyrhizobium japonicum USDA 110] Length = 549 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/368 (91%), Positives = 351/368 (95%), Gaps = 3/368 (0%) Query: 1 MAMFWGIAGFTVGLMIAMQLAWPALNFDLPWTTFGRLRPLHTSAVIFAFGGNVLIATSFY 60 MAMFWGIAGF VGL+IA QLAWPALNFDLPW +FGRLRPLHTSAVIFAFGGNVLIATSFY Sbjct: 91 MAMFWGIAGFLVGLIIASQLAWPALNFDLPWISFGRLRPLHTSAVIFAFGGNVLIATSFY 150 Query: 61 VVQKTCRTRLAGDLSPWFVVVGYNFFILVAGTGYLLGVTQSKEYAEPEWYADFWLTIVWV 120 VVQK+CR RLAGDL+PWFVVVGYNFFILVAGTGYLLGVTQSKEYAEPEWYAD WLTIVWV Sbjct: 151 VVQKSCRVRLAGDLAPWFVVVGYNFFILVAGTGYLLGVTQSKEYAEPEWYADLWLTIVWV 210 Query: 121 TYLLVFLMTLVKRKEPHIFVANWFYLAFIITIAVLHLGNNPALPVSFLGSKSYIAWGGVQ 180 YLLVFL T++KRKEPHIFVANWFYLAFI+TIAVLHLGNNPALPVS GSKSY+AWGG+Q Sbjct: 211 VYLLVFLATIIKRKEPHIFVANWFYLAFIVTIAVLHLGNNPALPVSAFGSKSYVAWGGIQ 270 Query: 181 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH 240 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERP+YSYRLSIIHFWALIFLYIWAGPH Sbjct: 271 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPIYSYRLSIIHFWALIFLYIWAGPH 330 Query: 241 HLHYTALPDWAQTLGMTFSIMLWMPSWGGMINGMMTLSGAWDKLRTDPVLRMMVVSVAFY 300 HLHYTALPDW QTLGMTFSIMLWMPSWGGMING+MTLSGAWDKLRTDPVLRM+VVSVAFY Sbjct: 331 HLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMLVVSVAFY 390 Query: 301 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLIPWLWNRQLYXG 360 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCL+PW WNR+ G Sbjct: 391 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLVPWAWNRK---G 447 Query: 361 LGRLRLVR 368 L L+LV Sbjct: 448 LYSLKLVN 455 >ref|ZP_08628816.1| cytochrome c oxidase subunit CcoN [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08175.1| cytochrome c oxidase subunit CcoN [Bradyrhizobiaceae bacterium SG-6C] Length = 550 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/368 (89%), Positives = 352/368 (95%), Gaps = 3/368 (0%) Query: 1 MAMFWGIAGFTVGLMIAMQLAWPALNFDLPWTTFGRLRPLHTSAVIFAFGGNVLIATSFY 60 +++FWGIAGFTVGL+IA QLAWP LNFDLPWTTFGRLRPLHTSAVIFAFGGNVLIATSFY Sbjct: 91 LSVFWGIAGFTVGLLIASQLAWPQLNFDLPWTTFGRLRPLHTSAVIFAFGGNVLIATSFY 150 Query: 61 VVQKTCRTRLAGDLSPWFVVVGYNFFILVAGTGYLLGVTQSKEYAEPEWYADFWLTIVWV 120 VVQKTCR RLAGDL+PWFVV+GYNFFIL+AGTGYLLGVTQSKEYAEPEWYAD LT+VWV Sbjct: 151 VVQKTCRVRLAGDLAPWFVVLGYNFFILIAGTGYLLGVTQSKEYAEPEWYADLLLTVVWV 210 Query: 121 TYLLVFLMTLVKRKEPHIFVANWFYLAFIITIAVLHLGNNPALPVSFLGSKSYIAWGGVQ 180 TYLLVF+ TL+KRKEPHIFVANWFYLAFI+TIAVLHLGNNP +PVS GSKSYIAWGGVQ Sbjct: 211 TYLLVFVATLIKRKEPHIFVANWFYLAFIVTIAVLHLGNNPGVPVSLFGSKSYIAWGGVQ 270 Query: 181 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH 240 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWA+IFLYIWAGPH Sbjct: 271 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWAIIFLYIWAGPH 330 Query: 241 HLHYTALPDWAQTLGMTFSIMLWMPSWGGMINGMMTLSGAWDKLRTDPVLRMMVVSVAFY 300 HLHYTALPDWAQTLGMTFSIMLWMPSWGGMING+MTLSGAWDKLRTDPVLRM+VVSVAFY Sbjct: 331 HLHYTALPDWAQTLGMTFSIMLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMLVVSVAFY 390 Query: 301 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLIPWLWNRQLYXG 360 GM+TFEGP+MS+K VNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCL+PWLW+R+ G Sbjct: 391 GMATFEGPLMSVKAVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLVPWLWDRK---G 447 Query: 361 LGRLRLVR 368 L L+LV Sbjct: 448 LYSLKLVN 455 >ref|YP_529913.1| cbb3-type cytochrome c oxidase subunit I [Rhodopseudomonas palustris BisB18] gb|ABD85594.1| cytochrome c oxidase, cbb3-type, subunit I [Rhodopseudomonas palustris BisB18] Length = 550 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/359 (90%), Positives = 346/359 (96%), Gaps = 1/359 (0%) Query: 1 MAMFWGIAGFTVGLMIAMQLAWPALNFDLPWTTFGRLRPLHTSAVIFAFGGNVLIATSFY 60 MAMFWGIAGF+VGLMIA+QLA+P LNFD+ W +FGRLRPLHTSAV+FAFGGNVL+ATS Y Sbjct: 91 MAMFWGIAGFSVGLMIALQLAFPLLNFDIQWISFGRLRPLHTSAVVFAFGGNVLLATSLY 150 Query: 61 VVQKTCRTRLAGDLSPWFVVVGYNFFILVAGTGYLLGVTQSKEYAEPEWYADFWLTIVWV 120 VVQKT R RLAGDL+PWFVV+GYN FIL+AGTGYLLGVTQSKEYAEPEWY+D LT+VWV Sbjct: 151 VVQKTSRVRLAGDLAPWFVVIGYNVFILIAGTGYLLGVTQSKEYAEPEWYSDALLTVVWV 210 Query: 121 TYLLVFLMTLVKRKEPHIFVANWFYLAFIITIAVLHLGNNPALPVSFLGSKSYIAWGGVQ 180 YLLVFLMTLVKRKEPHIFVANWFYLAFIITIAVLHLGNNPA+PVS+ GSKSYIAWGGVQ Sbjct: 211 AYLLVFLMTLVKRKEPHIFVANWFYLAFIITIAVLHLGNNPAVPVSWFGSKSYIAWGGVQ 270 Query: 181 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPH 240 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERP+YSYRLSIIHFWALIFLYIWAGPH Sbjct: 271 DAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPIYSYRLSIIHFWALIFLYIWAGPH 330 Query: 241 HLHYTALPDWAQTLGMTFSIMLWMPSWGGMINGMMTLSGAWDKLRTDPVLRMMVVSVAFY 300 HLHYTALPDW QTLGMTFSIMLWMPSWGGMING+MTLSGAWDKLRTDPVLRM+VVSVAFY Sbjct: 331 HLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMLVVSVAFY 390 Query: 301 GMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLIPWLWNR-QLY 358 GMSTFEGPMM+IKVVNSLSHYTDWT+GHVHSGALGWVGFVSFGALYCL+PW+WNR QLY Sbjct: 391 GMSTFEGPMMAIKVVNSLSHYTDWTVGHVHSGALGWVGFVSFGALYCLVPWVWNRKQLY 449