BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0077.0016.p (520 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767969.1| acyl-CoA synthetase [Bradyrhizobium japonicum U... 882 0.0 ref|YP_001208386.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS ... 874 0.0 ref|YP_001237134.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi... 871 0.0 ref|YP_001993149.1| acyl-CoA synthetase [Rhodopseudomonas palust... 857 0.0 ref|YP_485488.1| acyl-CoA synthetase [Rhodopseudomonas palustris... 857 0.0 >ref|NP_767969.1| acyl-CoA synthetase [Bradyrhizobium japonicum USDA 110] dbj|BAC46594.1| fatty acid CoA-ligase [Bradyrhizobium japonicum USDA 110] Length = 520 Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/520 (82%), Positives = 460/520 (88%) Query: 1 MSNPLYAFPAVCEQTLRALARYPSRTAFAWPGGSLSYQGATDLIGRMQGVFMRLGFAPGT 60 MS+PL+A C Q LRALARYP RTAFAWPGGSLSY+G DLIG +QGVFMRLG PG Sbjct: 1 MSDPLHASSPTCAQALRALARYPGRTAFAWPGGSLSYRGTIDLIGHIQGVFMRLGLQPGA 60 Query: 61 RVALLTANRADSWCAGVAAQLSRLAITWLHPLGSLDDQLFQIEDSEAQMLIVDGITFRDR 120 RVA LTANRAD+WCAGVAAQLSR +TWLHPLGS DQLFQ+EDSEA++L+VD FRDR Sbjct: 61 RVAFLTANRADTWCAGVAAQLSRFCVTWLHPLGSRGDQLFQLEDSEAEVLVVDAAAFRDR 120 Query: 121 GGELAAKAQGLKTVFTLGPADYGADLLQVAEDAGSASAKSFAREDDISTLNYTGGTTGKS 180 GGELAA A LK VFT GPADYG DLLQ E G ASA FA DD+STLNYTGGTTGKS Sbjct: 121 GGELAASASRLKAVFTTGPADYGVDLLQAIEIEGHASAHCFAGPDDLSTLNYTGGTTGKS 180 Query: 181 KGALRYHREYGGFAAAVLADFEIPETPRYLTVAPISHVAGTKVLPTLMRGGTVHMLKGFD 240 KGALRYHRE G AAA+LADFEIPE RYL VAPISHVAGTKVLPTLMRGGTVHMLKGFD Sbjct: 181 KGALRYHRENAGAAAAILADFEIPEDARYLAVAPISHVAGTKVLPTLMRGGTVHMLKGFD 240 Query: 241 PEAVFTTIARERINFTLFVPTMIYVMLDHPALDKTDLSSLELLLYGASAMSPSRLVEGIE 300 PEAV TIARERINFTLFVPTMIYV+LDHPAL +TDLSSLEL+LYGASAMSPSRL+EGIE Sbjct: 241 PEAVLATIARERINFTLFVPTMIYVLLDHPALSRTDLSSLELVLYGASAMSPSRLIEGIE 300 Query: 301 RIGPVFSQLYGQTECYPVSVLRKADHDPNTPDLFLSCGFPIAACQVKILDQDDQEVATGE 360 RIGPVFSQLYGQTECYP+SVLRK DHDP TP+LFLSCGFPIAAC+V+ILD +DQEV TGE Sbjct: 301 RIGPVFSQLYGQTECYPISVLRKKDHDPRTPELFLSCGFPIAACEVRILDDNDQEVKTGE 360 Query: 361 PGEICVRATHVMAEYWKRPDITAETLRSGWLHTGDIARMDERGYMFILDRKKDMIVSGGF 420 GEICVRA HVMAEYWKRPDITAETL++GW+HTGDIAR DERGYMFILDRKKDMIVSGGF Sbjct: 361 AGEICVRAPHVMAEYWKRPDITAETLKNGWVHTGDIARKDERGYMFILDRKKDMIVSGGF 420 Query: 421 NIFPREVEDVLSQHADVAMVAVVGVPDDKWGEAVTAVVVAREGTTPDADELIGLVKAKKG 480 NIFPREVEDVLSQHADVAMVAVVG+PD+KWGEAVTA+VV REG PD DELI VK +KG Sbjct: 421 NIFPREVEDVLSQHADVAMVAVVGIPDEKWGEAVTAIVVPREGAKPDPDELINFVKTRKG 480 Query: 481 SAHAPKQIQFVKELPMTGVGKVDKKVLKARFWTGRDRMVG 520 SAHAPKQIQFVK+LPMTGVGKVDKKVL+A FW+GRDRMVG Sbjct: 481 SAHAPKQIQFVKQLPMTGVGKVDKKVLRAGFWSGRDRMVG 520 >ref|YP_001208386.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS 278] emb|CAL80171.1| putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (Acyl-CoA synthetase)(fadD) [Bradyrhizobium sp. ORS 278] Length = 502 Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/502 (82%), Positives = 458/502 (91%) Query: 19 LARYPSRTAFAWPGGSLSYQGATDLIGRMQGVFMRLGFAPGTRVALLTANRADSWCAGVA 78 ++R+P RTAF+WPGGSLSYQGA DLIGRMQGVFMRLG PGTRVA LTANRAD+WCAG+A Sbjct: 1 MSRHPQRTAFSWPGGSLSYQGAIDLIGRMQGVFMRLGLPPGTRVAFLTANRADAWCAGMA 60 Query: 79 AQLSRLAITWLHPLGSLDDQLFQIEDSEAQMLIVDGITFRDRGGELAAKAQGLKTVFTLG 138 AQLSRLAITWLHPLGSL+DQLFQ+ DSE+Q+L++D FRDRGGELAA+A GL+ VFTLG Sbjct: 61 AQLSRLAITWLHPLGSLEDQLFQLSDSESQVLVIDAAAFRDRGGELAARADGLRHVFTLG 120 Query: 139 PADYGADLLQVAEDAGSASAKSFAREDDISTLNYTGGTTGKSKGALRYHREYGGFAAAVL 198 PA YGADLL +G A+A++FAR DD++TLNYTGGTTGKSKGALR+HREYGGFA A+L Sbjct: 121 PAGYGADLLAAIAQSGHATARNFARPDDLATLNYTGGTTGKSKGALRHHREYGGFATAIL 180 Query: 199 ADFEIPETPRYLTVAPISHVAGTKVLPTLMRGGTVHMLKGFDPEAVFTTIARERINFTLF 258 ADFEIP+ RYLTVAPISHVAGTKVLPTLMRGGTVHMLKGFDPEAV TIARERINFTLF Sbjct: 181 ADFEIPDRARYLTVAPISHVAGTKVLPTLMRGGTVHMLKGFDPEAVLDTIARERINFTLF 240 Query: 259 VPTMIYVMLDHPALDKTDLSSLELLLYGASAMSPSRLVEGIERIGPVFSQLYGQTECYPV 318 VPTMIYV+LDHPAL +TDLSSLEL+LYGASAMSP+RLVEGIERIGPVFSQLYGQTECYPV Sbjct: 241 VPTMIYVLLDHPALARTDLSSLELVLYGASAMSPTRLVEGIERIGPVFSQLYGQTECYPV 300 Query: 319 SVLRKADHDPNTPDLFLSCGFPIAACQVKILDQDDQEVATGEPGEICVRATHVMAEYWKR 378 SVLRKADHDP P+LFLSCGFPIAAC+VKILD DDQE GE GEICVRA HVMAEYWKR Sbjct: 301 SVLRKADHDPKQPELFLSCGFPIAACEVKILDDDDQEAPQGEAGEICVRAPHVMAEYWKR 360 Query: 379 PDITAETLRSGWLHTGDIARMDERGYMFILDRKKDMIVSGGFNIFPREVEDVLSQHADVA 438 PDITAETL++GWL TGDIAR DERGY++ILDRKKDMIVSGGFNIFPRE+EDVL+QHADVA Sbjct: 361 PDITAETLKNGWLRTGDIARRDERGYLYILDRKKDMIVSGGFNIFPREIEDVLTQHADVA 420 Query: 439 MVAVVGVPDDKWGEAVTAVVVAREGTTPDADELIGLVKAKKGSAHAPKQIQFVKELPMTG 498 M AVVGVPDDKWGEAVTA+VV R G P+A ELI LVKA+KGSAHAPK+++FVKELP+TG Sbjct: 421 MCAVVGVPDDKWGEAVTAIVVPRAGAQPNATELIELVKARKGSAHAPKRVEFVKELPVTG 480 Query: 499 VGKVDKKVLKARFWTGRDRMVG 520 VGK+DKKVL+A++W GR RMVG Sbjct: 481 VGKIDKKVLRAKYWEGRGRMVG 502 >ref|YP_001237134.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi1] gb|ABQ33228.1| putative long-chain-fatty-acid--CoA ligase [Bradyrhizobium sp. BTAi1] Length = 502 Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/502 (82%), Positives = 454/502 (90%) Query: 19 LARYPSRTAFAWPGGSLSYQGATDLIGRMQGVFMRLGFAPGTRVALLTANRADSWCAGVA 78 ++R+PSR AF+WPGGSLSYQGA DLIGRMQ VFMRLG PGT VA LTANRAD+WCAG+A Sbjct: 1 MSRHPSRIAFSWPGGSLSYQGAIDLIGRMQSVFMRLGLRPGTCVAFLTANRADTWCAGIA 60 Query: 79 AQLSRLAITWLHPLGSLDDQLFQIEDSEAQMLIVDGITFRDRGGELAAKAQGLKTVFTLG 138 AQLSRLAITWLHPLGSLDDQLFQ+ DSE+Q+L+VD FRDRGGELA++A GL+ VFTLG Sbjct: 61 AQLSRLAITWLHPLGSLDDQLFQLADSESQVLVVDAAAFRDRGGELASRADGLRHVFTLG 120 Query: 139 PADYGADLLQVAEDAGSASAKSFAREDDISTLNYTGGTTGKSKGALRYHREYGGFAAAVL 198 PA YGADLL E AG ASA++FA D++TLNYTGGTTGKSKGALR+HREYGGFA A+L Sbjct: 121 PAGYGADLLSAIEAAGQASARNFATPTDVATLNYTGGTTGKSKGALRHHREYGGFATAIL 180 Query: 199 ADFEIPETPRYLTVAPISHVAGTKVLPTLMRGGTVHMLKGFDPEAVFTTIARERINFTLF 258 ADFEIPE YL VAPISHVAGTKVLPTLMRGGTVHMLKGFDPEAV TI RERINFTLF Sbjct: 181 ADFEIPERASYLAVAPISHVAGTKVLPTLMRGGTVHMLKGFDPEAVLKTIERERINFTLF 240 Query: 259 VPTMIYVMLDHPALDKTDLSSLELLLYGASAMSPSRLVEGIERIGPVFSQLYGQTECYPV 318 VPTMIYV+LDHPAL +TDLSSL+L+LYGASAMSP+RLVEGIERIGPVFSQLYGQTECYPV Sbjct: 241 VPTMIYVLLDHPALSRTDLSSLDLVLYGASAMSPTRLVEGIERIGPVFSQLYGQTECYPV 300 Query: 319 SVLRKADHDPNTPDLFLSCGFPIAACQVKILDQDDQEVATGEPGEICVRATHVMAEYWKR 378 SVLRKADHDP P+LFLSCGFPIAAC VKIL+ DDQEVA GE GEICVRA HVMAEYWKR Sbjct: 301 SVLRKADHDPKQPELFLSCGFPIAACDVKILNDDDQEVAQGEAGEICVRAPHVMAEYWKR 360 Query: 379 PDITAETLRSGWLHTGDIARMDERGYMFILDRKKDMIVSGGFNIFPREVEDVLSQHADVA 438 PDITAETL++GWLHTGDIAR DERGYM+ILDRKKDMIVSGGFNIFPRE+EDVL+QH+DVA Sbjct: 361 PDITAETLKNGWLHTGDIARRDERGYMYILDRKKDMIVSGGFNIFPREIEDVLTQHSDVA 420 Query: 439 MVAVVGVPDDKWGEAVTAVVVAREGTTPDADELIGLVKAKKGSAHAPKQIQFVKELPMTG 498 M AVVGVPDDKWGEAVTA+VV R GT P+A ELI LVKA+KGSAHAPK+I+FV ELP+TG Sbjct: 421 MCAVVGVPDDKWGEAVTAIVVPRAGTQPNATELIELVKARKGSAHAPKRIEFVAELPVTG 480 Query: 499 VGKVDKKVLKARFWTGRDRMVG 520 VGKVDKKVL+AR+W GR RMVG Sbjct: 481 VGKVDKKVLRARYWEGRGRMVG 502 >ref|YP_001993149.1| acyl-CoA synthetase [Rhodopseudomonas palustris TIE-1] gb|ACF02674.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] Length = 520 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/520 (79%), Positives = 456/520 (87%) Query: 1 MSNPLYAFPAVCEQTLRALARYPSRTAFAWPGGSLSYQGATDLIGRMQGVFMRLGFAPGT 60 M+ L AFP QTLRALARYPSRTAFAWPGGSLSY+GATD+IG +Q VFM LG PGT Sbjct: 1 MTAELNAFPTAGTQTLRALARYPSRTAFAWPGGSLSYRGATDMIGSIQKVFMGLGLPPGT 60 Query: 61 RVALLTANRADSWCAGVAAQLSRLAITWLHPLGSLDDQLFQIEDSEAQMLIVDGITFRDR 120 RVALLTANRA++WCAGVAAQL R AITWLHPLGS DQL QIEDSEA +LIVD F +R Sbjct: 61 RVALLTANRAETWCAGVAAQLCRFAITWLHPLGSRQDQLDQIEDSEAAVLIVDAAAFLER 120 Query: 121 GGELAAKAQGLKTVFTLGPADYGADLLQVAEDAGSASAKSFAREDDISTLNYTGGTTGKS 180 GGELAA+A GL+ VFT+G ADYG DLL + AGSA+ + FA+ DD++ LNYTGGTTGKS Sbjct: 121 GGELAAQASGLRHVFTIGRADYGLDLLIALDQAGSATPRDFAQLDDVAVLNYTGGTTGKS 180 Query: 181 KGALRYHREYGGFAAAVLADFEIPETPRYLTVAPISHVAGTKVLPTLMRGGTVHMLKGFD 240 KGALR+HRE GFA A+LADFEIP PRYLTVAPISHVAGTKVLP+L+RGGT+HM+KGFD Sbjct: 181 KGALRHHRENAGFANAILADFEIPFDPRYLTVAPISHVAGTKVLPSLIRGGTIHMMKGFD 240 Query: 241 PEAVFTTIARERINFTLFVPTMIYVMLDHPALDKTDLSSLELLLYGASAMSPSRLVEGIE 300 PEAV TI RE+INFTLFVPTMIYV+LDHPAL KTDLSSL+L+LYGAS MSP+RLVEGIE Sbjct: 241 PEAVLQTIEREKINFTLFVPTMIYVLLDHPALAKTDLSSLDLVLYGASPMSPTRLVEGIE 300 Query: 301 RIGPVFSQLYGQTECYPVSVLRKADHDPNTPDLFLSCGFPIAACQVKILDQDDQEVATGE 360 RIGPVFSQLYGQTECYPVSVLRKADHDP P+LFLSCGFPIAAC +ILD++DQEV+ GE Sbjct: 301 RIGPVFSQLYGQTECYPVSVLRKADHDPKQPELFLSCGFPIAACDARILDENDQEVSLGE 360 Query: 361 PGEICVRATHVMAEYWKRPDITAETLRSGWLHTGDIARMDERGYMFILDRKKDMIVSGGF 420 GEICVRA HVMAEYWKRP+ TAETL+SGWLHTGDIA+ D+RGYM+ILDRKKDMIVSGGF Sbjct: 361 AGEICVRAPHVMAEYWKRPEQTAETLKSGWLHTGDIAKQDDRGYMYILDRKKDMIVSGGF 420 Query: 421 NIFPREVEDVLSQHADVAMVAVVGVPDDKWGEAVTAVVVAREGTTPDADELIGLVKAKKG 480 NIFPREVEDVLS H DVAMVAVVGVPDDKWGEAVTAVVVA+ GT PD ELI LVK +KG Sbjct: 421 NIFPREVEDVLSTHRDVAMVAVVGVPDDKWGEAVTAVVVAKPGTKPDERELIELVKTRKG 480 Query: 481 SAHAPKQIQFVKELPMTGVGKVDKKVLKARFWTGRDRMVG 520 SAHAPKQ+QFV ELPMTGVGK+DKKVL+A FW GRDRMVG Sbjct: 481 SAHAPKQVQFVTELPMTGVGKIDKKVLRAGFWAGRDRMVG 520 >ref|YP_485488.1| acyl-CoA synthetase [Rhodopseudomonas palustris HaA2] gb|ABD06577.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 520 Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/520 (79%), Positives = 455/520 (87%) Query: 1 MSNPLYAFPAVCEQTLRALARYPSRTAFAWPGGSLSYQGATDLIGRMQGVFMRLGFAPGT 60 M++ LYAFP C QTLRAL+RYPSR AFAWPGGS+SY+GA D+IG +Q VFM LG PGT Sbjct: 1 MTDALYAFPTACTQTLRALSRYPSRNAFAWPGGSMSYRGAIDMIGSIQKVFMGLGMEPGT 60 Query: 61 RVALLTANRADSWCAGVAAQLSRLAITWLHPLGSLDDQLFQIEDSEAQMLIVDGITFRDR 120 RVALLTANRA+SWCAGVAAQLSR AITWLHPLGSL DQL QI+DSEA +L++D F R Sbjct: 61 RVALLTANRAESWCAGVAAQLSRFAITWLHPLGSLQDQLDQIDDSEAAILLIDAAAFLQR 120 Query: 121 GGELAAKAQGLKTVFTLGPADYGADLLQVAEDAGSASAKSFAREDDISTLNYTGGTTGKS 180 GGELA +A L+ VFTLG ADYG DLL + AGSA+ + FAR DD++ LNYTGGTTGKS Sbjct: 121 GGELAGQASKLRHVFTLGRADYGVDLLVAIDKAGSATPRDFARIDDVAVLNYTGGTTGKS 180 Query: 181 KGALRYHREYGGFAAAVLADFEIPETPRYLTVAPISHVAGTKVLPTLMRGGTVHMLKGFD 240 KGALR HRE GFAAA+LADFEIP PRYLTVAPISHVAGTKVLP LMRGGTVHMLKGFD Sbjct: 181 KGALRRHRENAGFAAAILADFEIPMDPRYLTVAPISHVAGTKVLPALMRGGTVHMLKGFD 240 Query: 241 PEAVFTTIARERINFTLFVPTMIYVMLDHPALDKTDLSSLELLLYGASAMSPSRLVEGIE 300 PEAV TI RERINFTLFVPTM+YV+LDHP L TDLSSLEL+LYGAS MSP+RLVEGIE Sbjct: 241 PEAVLATIERERINFTLFVPTMVYVLLDHPKLASTDLSSLELVLYGASPMSPTRLVEGIE 300 Query: 301 RIGPVFSQLYGQTECYPVSVLRKADHDPNTPDLFLSCGFPIAACQVKILDQDDQEVATGE 360 RIGPVFSQLYGQTECYPVSVLRKADHDP P+LFLSCGFPIAAC +ILD++DQEVATGE Sbjct: 301 RIGPVFSQLYGQTECYPVSVLRKADHDPKQPELFLSCGFPIAACDARILDENDQEVATGE 360 Query: 361 PGEICVRATHVMAEYWKRPDITAETLRSGWLHTGDIARMDERGYMFILDRKKDMIVSGGF 420 GEICVRA HVMAEYWKRP+ TAETL++GWLHTGDIAR D+RGYM+ILDRKKDMIVSGGF Sbjct: 361 SGEICVRAPHVMAEYWKRPEQTAETLKNGWLHTGDIARRDDRGYMYILDRKKDMIVSGGF 420 Query: 421 NIFPREVEDVLSQHADVAMVAVVGVPDDKWGEAVTAVVVAREGTTPDADELIGLVKAKKG 480 NIFPREVEDVLS H DVAMVAVVGVPDDKWGEAVTA+VVAR G+ PD ELI LVK++KG Sbjct: 421 NIFPREVEDVLSTHRDVAMVAVVGVPDDKWGEAVTAIVVARAGSKPDEQELIELVKSRKG 480 Query: 481 SAHAPKQIQFVKELPMTGVGKVDKKVLKARFWTGRDRMVG 520 SAHAPKQI+FV ELPMTGVGK+DKKVL+A FW GRDRMVG Sbjct: 481 SAHAPKQIKFVSELPMTGVGKIDKKVLRADFWKGRDRMVG 520