BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0077.0015.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767970.1| hypothetical protein blr1330 [Bradyrhizobium ja... 525 e-147 ref|YP_570620.1| 2-nitropropane dioxygenase [Rhodopseudomonas pa... 501 e-140 ref|YP_004108044.1| 2-nitropropane dioxygenase NPD [Rhodopseudom... 501 e-140 ref|YP_001208384.1| hypothetical protein BRADO6562 [Bradyrhizobi... 501 e-140 ref|NP_948994.1| hypothetical protein RPA3656 [Rhodopseudomonas ... 500 e-139 >ref|NP_767970.1| hypothetical protein blr1330 [Bradyrhizobium japonicum USDA 110] dbj|BAC46595.1| blr1330 [Bradyrhizobium japonicum USDA 110] Length = 357 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 260/321 (80%), Positives = 283/321 (88%) Query: 8 LSADPLARFRDRLRLPLIAAPMFLVSGVELVVAACRNGVIGSFPTVNCRETEQLDAWLGD 67 +++D L RFRDRL LPLIAAPMFLVSGVEL+VAAC++GVIGSFP+ NCR EQLD WL + Sbjct: 37 VTSDRLQRFRDRLALPLIAAPMFLVSGVELMVAACQSGVIGSFPSANCRSAEQLDEWLRE 96 Query: 68 IARRLQAHADATGQAAAPICPNLIVHRSNTRLAQDLAVLLRHKPELVITSVGSPAPVLGP 127 I RL+ H D + AAP+CPNLIVHRSN RL QDLAVLLRH+PE+VITSVGSPAPVL P Sbjct: 97 IEARLRRHEDQARRKAAPLCPNLIVHRSNARLEQDLAVLLRHRPEIVITSVGSPAPVLKP 156 Query: 128 LHDAGALVFADVASIRHAERAAAVGADGLVLLTAGAGGQTGWLNPFVFVRAVRGFFDGPI 187 LHDAGALV ADVASIRHAERAA GADGLVLLTAGAGGQTGWLNPF FVRAVR F+DG I Sbjct: 157 LHDAGALVLADVASIRHAERAAEAGADGLVLLTAGAGGQTGWLNPFAFVRAVRAFYDGII 216 Query: 188 VLAGGISDGHALRAAEALGCDLAYMGTKFIATRESMADGRYKQMLVDSTADDILLTTAFT 247 VLAGGISDG AL AAE LGCDL YMGTKFIATRESMAD RYK+MLV+S+ADDILLTTAFT Sbjct: 217 VLAGGISDGRALHAAEVLGCDLGYMGTKFIATRESMADDRYKRMLVESSADDILLTTAFT 276 Query: 248 GLQTNMLRPSIEAAGLDPDDLPARGAIDIGKDIDIGARESRPKRWRDIWSGGHSTSGVTG 307 GLQT+ML+PSI AAGLDPDDLPARGAIDI KDID+ ARE+RPKRWRDIWSGGHSTSGVT Sbjct: 277 GLQTSMLKPSIVAAGLDPDDLPARGAIDIAKDIDVNARENRPKRWRDIWSGGHSTSGVTD 336 Query: 308 VLGVDELVAQTIAEYEAASGR 328 VL VD+LVA T+AEY AA GR Sbjct: 337 VLAVDDLVASTLAEYRAAGGR 357 >ref|YP_570620.1| 2-nitropropane dioxygenase [Rhodopseudomonas palustris BisB5] gb|ABE40719.1| 2-nitropropane dioxygenase, NPD [Rhodopseudomonas palustris BisB5] Length = 321 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 249/317 (78%), Positives = 272/317 (85%) Query: 9 SADPLARFRDRLRLPLIAAPMFLVSGVELVVAACRNGVIGSFPTVNCRETEQLDAWLGDI 68 +AD L RFRDRL LPLIAAPMFLVSGV+LV AC NGVIGSFPTVNCR TEQL+AWL I Sbjct: 4 AADRLTRFRDRLELPLIAAPMFLVSGVDLVATACANGVIGSFPTVNCRTTEQLEAWLTSI 63 Query: 69 ARRLQAHADATGQAAAPICPNLIVHRSNTRLAQDLAVLLRHKPELVITSVGSPAPVLGPL 128 A+RL +G+AAAP CPNLIVHRSN RLA DLAVLL H+PE+VITSVGSP PV+ L Sbjct: 64 AQRLATLEQTSGKAAAPWCPNLIVHRSNARLADDLAVLLMHRPEIVITSVGSPEPVIKQL 123 Query: 129 HDAGALVFADVASIRHAERAAAVGADGLVLLTAGAGGQTGWLNPFVFVRAVRGFFDGPIV 188 HD G +V ADVASIRHAERA A GADGLVLLTAGAGGQTGWLNPF FVRAVR FFDG +V Sbjct: 124 HDIGTMVLADVASIRHAERAVAAGADGLVLLTAGAGGQTGWLNPFAFVRAVRQFFDGVVV 183 Query: 189 LAGGISDGHALRAAEALGCDLAYMGTKFIATRESMADGRYKQMLVDSTADDILLTTAFTG 248 LAGGISDG ALRAA LGCDLAYMGTKFIAT+ES AD RYK MLVDS+ADDILLT AFTG Sbjct: 184 LAGGISDGVALRAAMTLGCDLAYMGTKFIATQESAADPRYKAMLVDSSADDILLTKAFTG 243 Query: 249 LQTNMLRPSIEAAGLDPDDLPARGAIDIGKDIDIGARESRPKRWRDIWSGGHSTSGVTGV 308 LQT+MLRPSI AAGLDPDDLP RGAIDIGKDIDIGARESRP+RWRDIWS GHSTSGV G+ Sbjct: 244 LQTSMLRPSIVAAGLDPDDLPQRGAIDIGKDIDIGARESRPQRWRDIWSAGHSTSGVGGI 303 Query: 309 LGVDELVAQTIAEYEAA 325 + + +LV QT++E+ +A Sbjct: 304 VPIADLVKQTVSEFRSA 320 >ref|YP_004108044.1| 2-nitropropane dioxygenase NPD [Rhodopseudomonas palustris DX-1] gb|ADU43311.1| 2-nitropropane dioxygenase NPD [Rhodopseudomonas palustris DX-1] Length = 320 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 248/318 (77%), Positives = 273/318 (85%) Query: 9 SADPLARFRDRLRLPLIAAPMFLVSGVELVVAACRNGVIGSFPTVNCRETEQLDAWLGDI 68 S+D LARF DRL LPLIAAPMFLVSGV+LV AAC +GVIGSFPTVNCR TEQL WLG+I Sbjct: 3 SSDRLARFGDRLSLPLIAAPMFLVSGVDLVAAACSSGVIGSFPTVNCRTTEQLGDWLGEI 62 Query: 69 ARRLQAHADATGQAAAPICPNLIVHRSNTRLAQDLAVLLRHKPELVITSVGSPAPVLGPL 128 RR+ AH A+G+ AAP CPNLIVHRSNTRL DL +LL+H+PE+VITSVGSP PV+ PL Sbjct: 63 NRRIAAHEQASGRRAAPWCPNLIVHRSNTRLGDDLKLLLQHRPEVVITSVGSPQPVIAPL 122 Query: 129 HDAGALVFADVASIRHAERAAAVGADGLVLLTAGAGGQTGWLNPFVFVRAVRGFFDGPIV 188 HD GA+V ADVASIRHAERAAA G DGLVLLTAGAGGQTGWLNPF FVRAVR FFDG IV Sbjct: 123 HDVGAMVLADVASIRHAERAAAAGVDGLVLLTAGAGGQTGWLNPFAFVRAVRQFFDGVIV 182 Query: 189 LAGGISDGHALRAAEALGCDLAYMGTKFIATRESMADGRYKQMLVDSTADDILLTTAFTG 248 LAGGISDG ALRAA LGCDL YMGTKFIAT ES+AD RYK MLV+++ADDILLT AFTG Sbjct: 183 LAGGISDGVALRAAMTLGCDLGYMGTKFIATEESVADPRYKAMLVEASADDILLTKAFTG 242 Query: 249 LQTNMLRPSIEAAGLDPDDLPARGAIDIGKDIDIGARESRPKRWRDIWSGGHSTSGVTGV 308 LQTNMLRPSI AAGLDPDDLP RG IDIGKDID+GARE RPKRWRDIWS GHS SG+ G+ Sbjct: 243 LQTNMLRPSIVAAGLDPDDLPERGGIDIGKDIDVGAREDRPKRWRDIWSAGHSASGIGGI 302 Query: 309 LGVDELVAQTIAEYEAAS 326 + + ELVAQT AE+ +A+ Sbjct: 303 VPIAELVAQTTAEFRSAA 320 >ref|YP_001208384.1| hypothetical protein BRADO6562 [Bradyrhizobium sp. ORS 278] emb|CAL80169.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 324 Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust. Identities = 252/317 (79%), Positives = 271/317 (85%) Query: 12 PLARFRDRLRLPLIAAPMFLVSGVELVVAACRNGVIGSFPTVNCRETEQLDAWLGDIARR 71 PL R RLRLPLIAAPMFLVSGVELV AAC NGVIG+FPTVNCR ++LD WL DIA R Sbjct: 5 PLPEIRKRLRLPLIAAPMFLVSGVELVSAACANGVIGAFPTVNCRTPDELDGWLRDIAGR 64 Query: 72 LQAHADATGQAAAPICPNLIVHRSNTRLAQDLAVLLRHKPELVITSVGSPAPVLGPLHDA 131 L +DA+G AAAP+CPNLIVHRSN RLA DLAVLLRH+PELVITSVGSPAPV+ PLH+A Sbjct: 65 LARASDASGVAAAPVCPNLIVHRSNARLADDLAVLLRHRPELVITSVGSPAPVIAPLHEA 124 Query: 132 GALVFADVASIRHAERAAAVGADGLVLLTAGAGGQTGWLNPFVFVRAVRGFFDGPIVLAG 191 GALVFADVAS+RHAERA GADGLVLLTAGAGGQTGWLNPF FVRAVR F GPIVLAG Sbjct: 125 GALVFADVASLRHAERAIEAGADGLVLLTAGAGGQTGWLNPFAFVRAVRSLFAGPIVLAG 184 Query: 192 GISDGHALRAAEALGCDLAYMGTKFIATRESMADGRYKQMLVDSTADDILLTTAFTGLQT 251 GISDG ALRAAE LGCDLAYMGTKFIATRES+AD RYK MLVDS+ADD+LLT+A TGL T Sbjct: 185 GISDGVALRAAEMLGCDLAYMGTKFIATRESVADARYKTMLVDSSADDVLLTSAVTGLPT 244 Query: 252 NMLRPSIEAAGLDPDDLPARGAIDIGKDIDIGARESRPKRWRDIWSGGHSTSGVTGVLGV 311 +MLRPSI AAGLDPD LPARGAI+IGKDID+GARESRP RWRDIWS GHS SGVT + V Sbjct: 245 SMLRPSIFAAGLDPDALPARGAIEIGKDIDVGARESRPTRWRDIWSAGHSVSGVTDITDV 304 Query: 312 DELVAQTIAEYEAASGR 328 LVA+T EYE A R Sbjct: 305 ATLVARTAEEYEHAGSR 321 >ref|NP_948994.1| hypothetical protein RPA3656 [Rhodopseudomonas palustris CGA009] emb|CAE29097.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 329 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 247/318 (77%), Positives = 273/318 (85%) Query: 9 SADPLARFRDRLRLPLIAAPMFLVSGVELVVAACRNGVIGSFPTVNCRETEQLDAWLGDI 68 S D LARF DRL LPLIAAPMFLVSG++LV AAC +GVIGSFPTVNCR TEQL WLG+I Sbjct: 12 STDRLARFGDRLSLPLIAAPMFLVSGIDLVAAACSSGVIGSFPTVNCRTTEQLGDWLGEI 71 Query: 69 ARRLQAHADATGQAAAPICPNLIVHRSNTRLAQDLAVLLRHKPELVITSVGSPAPVLGPL 128 RR+ A+ A+G+ AAP CPNLIVHRSN RLA DL +LL+H+PE+VITSVGSP PV+ PL Sbjct: 72 NRRIAAYEQASGRRAAPWCPNLIVHRSNARLADDLKLLLQHRPEVVITSVGSPQPVIAPL 131 Query: 129 HDAGALVFADVASIRHAERAAAVGADGLVLLTAGAGGQTGWLNPFVFVRAVRGFFDGPIV 188 HD GA+V ADVASIRHAERAAA G DGLVLLTAGAGGQTGWLNPF FVRAVR FFDG IV Sbjct: 132 HDVGAMVLADVASIRHAERAAAAGVDGLVLLTAGAGGQTGWLNPFAFVRAVRQFFDGVIV 191 Query: 189 LAGGISDGHALRAAEALGCDLAYMGTKFIATRESMADGRYKQMLVDSTADDILLTTAFTG 248 LAGGISDG ALRAA LGCDL YMGTKFIAT ES+AD RYK MLV+++ADDILLT AFTG Sbjct: 192 LAGGISDGVALRAAMTLGCDLGYMGTKFIATEESLADLRYKAMLVEASADDILLTKAFTG 251 Query: 249 LQTNMLRPSIEAAGLDPDDLPARGAIDIGKDIDIGARESRPKRWRDIWSGGHSTSGVTGV 308 LQTNMLRPSI AAGLDPDDLP RG IDIGKDID+GARE RPKRWRDIWS GHSTSG+ GV Sbjct: 252 LQTNMLRPSIVAAGLDPDDLPERGGIDIGKDIDVGAREDRPKRWRDIWSAGHSTSGIGGV 311 Query: 309 LGVDELVAQTIAEYEAAS 326 + + ELVA+T AE+ +A+ Sbjct: 312 VPIAELVAKTTAEFRSAA 329