BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0076.0010.p (429 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001243385.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 804 0.0 ref|NP_767576.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syn... 795 0.0 ref|YP_001202727.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 789 0.0 ref|YP_567456.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syn... 776 0.0 ref|YP_001989555.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 775 0.0 >ref|YP_001243385.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Bradyrhizobium sp. BTAi1] sp|A5ETI5.1|ISPG_BRASB RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase gb|ABQ39479.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Bradyrhizobium sp. BTAi1] Length = 429 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/429 (90%), Positives = 408/429 (95%) Query: 1 MNKPEILPQDDVAGPAPRHQTTQVMVGNVAVGGGAPIVVQSMTNTDTADVDGTIAQVAAL 60 MNKPEI+ Q D+AGPAPRHQTT+VMVGNVAVGGGAPIVVQSMTNTDTADV+ T+AQVAAL Sbjct: 1 MNKPEIMTQTDIAGPAPRHQTTKVMVGNVAVGGGAPIVVQSMTNTDTADVESTVAQVAAL 60 Query: 61 SRAGSEMVRITVDREEAAAAVPHIRDGLRKRGITTPLIGDFHYIGHKLLAEYPDCAEALD 120 +RAGSEMVRITVDREEAAAAVPHIR+ L KRGITTPLIGDFHYIGHKLL +YP CAEAL Sbjct: 61 ARAGSEMVRITVDREEAAAAVPHIREQLDKRGITTPLIGDFHYIGHKLLTDYPACAEALA 120 Query: 121 KYRINPGNVGFKNKRDTQFADIIEIANKNNKPVRIGANWGSLDQELLTKLMDENTASANP 180 KYRINPGNVGFK+KRDTQF+ IIE+ANK KPVRIGANWGSLDQELL+KLMDEN ASA P Sbjct: 121 KYRINPGNVGFKDKRDTQFSTIIELANKYGKPVRIGANWGSLDQELLSKLMDENAASATP 180 Query: 181 RDARAVTREAMVQSALLSAARAQELGMPKNRIILSAKVSAVQDLIAVYQEVVRRSDYAIH 240 RDARAVTREAMVQSALLSAARAQELGMPK+RIILSAKVSAVQDLIAVYQ++ RSDYAIH Sbjct: 181 RDARAVTREAMVQSALLSAARAQELGMPKDRIILSAKVSAVQDLIAVYQDLAARSDYAIH 240 Query: 241 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGF 300 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGF Sbjct: 241 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGF 300 Query: 301 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPAWKTKYPGVEQLNVAVMGCIVNG 360 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIR+EMPAWK+KYPGVE LNVAVMGCIVNG Sbjct: 301 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIREEMPAWKSKYPGVENLNVAVMGCIVNG 360 Query: 361 PGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGPGIAADFKALVIDYIDQRYGNGAK 420 PGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGP IAADFKALVIDYIDQRYG+GAK Sbjct: 361 PGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGPTIAADFKALVIDYIDQRYGSGAK 420 Query: 421 LPEHAGAAE 429 PE AAE Sbjct: 421 APESVTAAE 429 >ref|NP_767576.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Bradyrhizobium japonicum USDA 110] sp|Q89VV9.1|ISPG_BRAJA RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase dbj|BAC46201.1| peptidoglycan acetylation protein [Bradyrhizobium japonicum USDA 110] Length = 427 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/422 (91%), Positives = 402/422 (95%) Query: 1 MNKPEILPQDDVAGPAPRHQTTQVMVGNVAVGGGAPIVVQSMTNTDTADVDGTIAQVAAL 60 MNK E D+AGPAPRH+TTQV VG+VAVGGGAPIVVQSMTNTDTAD+DGTIAQVAAL Sbjct: 1 MNKLENTIDSDIAGPAPRHRTTQVKVGDVAVGGGAPIVVQSMTNTDTADIDGTIAQVAAL 60 Query: 61 SRAGSEMVRITVDREEAAAAVPHIRDGLRKRGITTPLIGDFHYIGHKLLAEYPDCAEALD 120 +RAGSEMVRITVDREEAAAAVPHIRDGL KRGITTPLIGDFHYIGHKLLA YP CAEAL Sbjct: 61 ARAGSEMVRITVDREEAAAAVPHIRDGLAKRGITTPLIGDFHYIGHKLLAAYPACAEALA 120 Query: 121 KYRINPGNVGFKNKRDTQFADIIEIANKNNKPVRIGANWGSLDQELLTKLMDENTASANP 180 KYRINPGNVGFK+KRDTQFADIIEIANKN+KPVRIGANWGSLDQELLTKLMDEN ASANP Sbjct: 121 KYRINPGNVGFKDKRDTQFADIIEIANKNSKPVRIGANWGSLDQELLTKLMDENAASANP 180 Query: 181 RDARAVTREAMVQSALLSAARAQELGMPKNRIILSAKVSAVQDLIAVYQEVVRRSDYAIH 240 RD RAVTREAMVQSALLSAARA+ELGMPK+RIILSAKVSAVQDLIAVYQ++ RSDYAIH Sbjct: 181 RDVRAVTREAMVQSALLSAARAEELGMPKDRIILSAKVSAVQDLIAVYQDLASRSDYAIH 240 Query: 241 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGF 300 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRT EVQV QELLQTMGF Sbjct: 241 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTREVQVGQELLQTMGF 300 Query: 301 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPAWKTKYPGVEQLNVAVMGCIVNG 360 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPAWKTKYPGVE+LNVAVMGCIVNG Sbjct: 301 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPAWKTKYPGVEELNVAVMGCIVNG 360 Query: 361 PGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGPGIAADFKALVIDYIDQRYGNGAK 420 PGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGP I+ DFKALVIDYIDQRYG GAK Sbjct: 361 PGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGPTISDDFKALVIDYIDQRYGQGAK 420 Query: 421 LP 422 +P Sbjct: 421 VP 422 >ref|YP_001202727.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Bradyrhizobium sp. ORS 278] sp|A4YKQ8.1|ISPG_BRASO RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase emb|CAL74484.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Bradyrhizobium sp. ORS 278] Length = 433 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/433 (89%), Positives = 404/433 (93%), Gaps = 4/433 (0%) Query: 1 MNKPEILPQD----DVAGPAPRHQTTQVMVGNVAVGGGAPIVVQSMTNTDTADVDGTIAQ 56 MNKPE + ++ DVAGPAPRHQTT+VMVGNVAVGGGAPIVVQSMTNTDTADVD T+AQ Sbjct: 1 MNKPETVTENSLASDVAGPAPRHQTTKVMVGNVAVGGGAPIVVQSMTNTDTADVDSTVAQ 60 Query: 57 VAALSRAGSEMVRITVDREEAAAAVPHIRDGLRKRGITTPLIGDFHYIGHKLLAEYPDCA 116 VAAL+RAGSEMVRITVDR+EAAAAVPHIR+ L KRGITTPLIGDFHYIGHKLL EYP CA Sbjct: 61 VAALARAGSEMVRITVDRDEAAAAVPHIREQLDKRGITTPLIGDFHYIGHKLLTEYPACA 120 Query: 117 EALDKYRINPGNVGFKNKRDTQFADIIEIANKNNKPVRIGANWGSLDQELLTKLMDENTA 176 EAL KYRINPGNVGFK+KRDTQF+ IIE+ANK KPVRIGANWGSLDQELL+KLMDEN A Sbjct: 121 EALAKYRINPGNVGFKDKRDTQFSTIIELANKYGKPVRIGANWGSLDQELLSKLMDENAA 180 Query: 177 SANPRDARAVTREAMVQSALLSAARAQELGMPKNRIILSAKVSAVQDLIAVYQEVVRRSD 236 SANPR+ARAV REAMVQSAL SA RAQELGMPK+RIILSAKVSAVQDLIAVYQ++ RSD Sbjct: 181 SANPRNARAVMREAMVQSALHSAERAQELGMPKDRIILSAKVSAVQDLIAVYQDLAARSD 240 Query: 237 YAIHLGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQ 296 YAIHLGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQ Sbjct: 241 YAIHLGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQ 300 Query: 297 TMGFRTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPAWKTKYPGVEQLNVAVMGC 356 TMGFRTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMP WK KYPGVE LNVAVMGC Sbjct: 301 TMGFRTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPTWKIKYPGVEALNVAVMGC 360 Query: 357 IVNGPGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGPGIAADFKALVIDYIDQRYG 416 IVNGPGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGP IAADFKALVIDYIDQRYG Sbjct: 361 IVNGPGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGPTIAADFKALVIDYIDQRYG 420 Query: 417 NGAKLPEHAGAAE 429 +GAK PE AAE Sbjct: 421 SGAKAPESVTAAE 433 >ref|YP_567456.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Rhodopseudomonas palustris BisB5] gb|ABE37555.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Rhodopseudomonas palustris BisB5] Length = 441 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/431 (88%), Positives = 402/431 (93%), Gaps = 2/431 (0%) Query: 1 MNKPEILPQDDVAGPAPRHQTTQVMVGNVAVGGGAPIVVQSMTNTDTADVDGTIAQVAAL 60 MNK E Q+DVAGPAPR QTTQVMVG+VAVGGGAPIVVQSMTNTDTADV+GTI QVAAL Sbjct: 11 MNKLENPLQNDVAGPAPRRQTTQVMVGDVAVGGGAPIVVQSMTNTDTADVEGTIKQVAAL 70 Query: 61 SRAGSEMVRITVDREEAAAAVPHIRDGLRKRGITTPLIGDFHYIGHKLLAEYPDCAEALD 120 +RAGSEMVRITVDREEAAAAVPHIRDGLRK G+TTPLIGDFHYIGHKLLA+YP CAEALD Sbjct: 71 ARAGSEMVRITVDREEAAAAVPHIRDGLRKLGLTTPLIGDFHYIGHKLLADYPACAEALD 130 Query: 121 KYRINPGNVGFKNKRDTQFADIIEIANKNNKPVRIGANWGSLDQELLTKLMDENTASANP 180 KYRINPGNVGFKNKRD+QF DI+EIA KNNK VRIGANWGSLDQELLTKLMDEN ASA P Sbjct: 131 KYRINPGNVGFKNKRDSQFTDIVEIAIKNNKAVRIGANWGSLDQELLTKLMDENAASAQP 190 Query: 181 RDARAVTREAMVQSALLSAARAQELGMPKNRIILSAKVSAVQDLIAVYQEVVRRSDYAIH 240 RD RAVTREAMVQSALLSAARA+E+G+PK ++ILSAKVSAVQDLIAVYQ++ RSDYAIH Sbjct: 191 RDVRAVTREAMVQSALLSAARAEEIGLPKTKMILSAKVSAVQDLIAVYQDLASRSDYAIH 250 Query: 241 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGF 300 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGF Sbjct: 251 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGF 310 Query: 301 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPAWKTKYPGVEQLNVAVMGCIVNG 360 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIR EMP+WKT+YPGVE LNVAVMGCIVNG Sbjct: 311 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRLEMPSWKTRYPGVENLNVAVMGCIVNG 370 Query: 361 PGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGPGIAADFKALVIDYIDQRYGNGAK 420 PGESKHANIGISLPGTGE+PAAPVFVDG+KFRTLRGP IA DFKALVIDYI+QRYG G K Sbjct: 371 PGESKHANIGISLPGTGESPAAPVFVDGQKFRTLRGPSIATDFKALVIDYIEQRYGAGTK 430 Query: 421 --LPEHAGAAE 429 P+ AAE Sbjct: 431 PGAPQMVPAAE 441 >ref|YP_001989555.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Rhodopseudomonas palustris TIE-1] sp|B3QBC6.1|ISPG_RHOPT RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase gb|ACE99079.1| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [Rhodopseudomonas palustris TIE-1] Length = 431 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/416 (90%), Positives = 396/416 (95%) Query: 1 MNKPEILPQDDVAGPAPRHQTTQVMVGNVAVGGGAPIVVQSMTNTDTADVDGTIAQVAAL 60 MNK E +DDVAGPAPRHQTTQVMVG+VAVGGGAPIVVQSMTNTDTADV+GTI Q+AAL Sbjct: 1 MNKLENPLRDDVAGPAPRHQTTQVMVGDVAVGGGAPIVVQSMTNTDTADVEGTIKQIAAL 60 Query: 61 SRAGSEMVRITVDREEAAAAVPHIRDGLRKRGITTPLIGDFHYIGHKLLAEYPDCAEALD 120 +RAGSEMVRITVDREEAAAAVPHIRDG+RK G+TTP+IGDFHYIGHKLLAEYP CAEALD Sbjct: 61 ARAGSEMVRITVDREEAAAAVPHIRDGIRKLGLTTPIIGDFHYIGHKLLAEYPACAEALD 120 Query: 121 KYRINPGNVGFKNKRDTQFADIIEIANKNNKPVRIGANWGSLDQELLTKLMDENTASANP 180 KYRINPGNVGFKNKRDTQFADI+EIA KNNK VRIGANWGSLDQELLTKLMDEN ASANP Sbjct: 121 KYRINPGNVGFKNKRDTQFADIVEIAIKNNKAVRIGANWGSLDQELLTKLMDENAASANP 180 Query: 181 RDARAVTREAMVQSALLSAARAQELGMPKNRIILSAKVSAVQDLIAVYQEVVRRSDYAIH 240 RD RAVTREAMVQSALLSAARA+E+G+PKN++ILSAKVSAVQDLIAVYQ++ RSDYAIH Sbjct: 181 RDVRAVTREAMVQSALLSAARAEEIGLPKNKMILSAKVSAVQDLIAVYQDLASRSDYAIH 240 Query: 241 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTLEVQVAQELLQTMGF 300 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRT EVQV QELLQTMGF Sbjct: 241 LGLTEAGMGSKGIVASSAALGILLQQGIGDTIRISLTPEPGGDRTREVQVGQELLQTMGF 300 Query: 301 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPAWKTKYPGVEQLNVAVMGCIVNG 360 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMP W+++YPGVE LNVAVMGCIVNG Sbjct: 301 RTFVPLVAACPGCGRTTSTTFQELARSIQDFIRDEMPEWRSRYPGVENLNVAVMGCIVNG 360 Query: 361 PGESKHANIGISLPGTGEAPAAPVFVDGKKFRTLRGPGIAADFKALVIDYIDQRYG 416 PGESKHANIGISLPGTGE PAAPVFVDG+KFRTLRG IAADFKALVIDYI+QRYG Sbjct: 361 PGESKHANIGISLPGTGETPAAPVFVDGEKFRTLRGENIAADFKALVIDYIEQRYG 416