BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0076.0008.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767575.1| hypothetical protein blr0935 [Bradyrhizobium ja... 448 e-124 ref|YP_001202726.1| DMT family permease [Bradyrhizobium sp. ORS ... 419 e-115 ref|YP_001243386.1| DMT family permease [Bradyrhizobium sp. BTAi... 410 e-112 ref|YP_779126.1| hypothetical protein RPE_0186 [Rhodopseudomonas... 407 e-111 ref|YP_567457.1| hypothetical protein RPD_0318 [Rhodopseudomonas... 402 e-110 >ref|NP_767575.1| hypothetical protein blr0935 [Bradyrhizobium japonicum USDA 110] dbj|BAC46200.1| blr0935 [Bradyrhizobium japonicum USDA 110] Length = 317 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/293 (76%), Positives = 253/293 (86%) Query: 15 SVGHGLPPGAIAVMLMLCVSWGFNQLAVKLALPDVPPMLQALIRSAGALPVMLIVGHLRG 74 S G L GAIA+MLMLC++WGFNQ+AVKL LPD+PPMLQA+IRS GALPV+ I+G LRG Sbjct: 9 SAGRPLSAGAIALMLMLCLTWGFNQIAVKLVLPDIPPMLQAMIRSMGALPVLFIIGTLRG 68 Query: 75 VKFFERDGTLVPGIIAGLMFGCEFVLIFTGLVFTSASRASVFLYTAPFFVALGSHQFLGE 134 VKFFE+DGT PG+IAGLMFG EFVLIF GL T ASRA VFLYTAPFFVALGS+Q LGE Sbjct: 69 VKFFEKDGTWKPGLIAGLMFGIEFVLIFQGLRLTPASRAVVFLYTAPFFVALGSYQVLGE 128 Query: 135 RLSTVQWSGLALSFAGVALAIGVPQPNVDAKVLLGDLMVVGGGALWAATTLVAKGTGWRK 194 RL QW GLA+SFAGVALAIGVPQP+VDAKVLLGDLM+VGG ALWAATTLVAKGT R Sbjct: 129 RLGGTQWLGLAVSFAGVALAIGVPQPDVDAKVLLGDLMIVGGAALWAATTLVAKGTRLRF 188 Query: 195 AAPEKALGYQVAISIPILGLAAWIAGERIEHVPSALSISLLAYQAVWVVGCTFVIWFAMV 254 AAPEKALGYQVA SIPILGLAAW+ GE I H P+ LS++L+A+QA+WVVG TF +WFA+V Sbjct: 189 AAPEKALGYQVATSIPILGLAAWLFGESITHTPAPLSLALMAFQAIWVVGTTFTLWFALV 248 Query: 255 KTYSASKLSAFTFVTPLFGVVAAYFIMHDTLTAVFGVAALLVIAGLYLVNKPD 307 K YSASKLSAFTF+TPLFGVV +YFIMHDTL+ FG AA+LVIAGL+LVN+P Sbjct: 249 KAYSASKLSAFTFITPLFGVVGSYFIMHDTLSLTFGAAAVLVIAGLFLVNRPS 301 >ref|YP_001202726.1| DMT family permease [Bradyrhizobium sp. ORS 278] emb|CAL74483.1| putative permease (drug-metabolite transporter DMT family) [Bradyrhizobium sp. ORS 278] Length = 317 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/316 (67%), Positives = 253/316 (80%), Gaps = 8/316 (2%) Query: 1 MSTQAISASVTRPVSVGHGLPPGAIAVMLMLCVSWGFNQLAVKLALPDVPPMLQALIRSA 60 MS + S++ TRP L PGAIA+ L+LC+SW FNQ+A+KLALP+VPPMLQA RSA Sbjct: 1 MSAISHSSAATRP------LGPGAIAITLVLCLSWAFNQIAIKLALPEVPPMLQATFRSA 54 Query: 61 GALPVMLIVGHLRGVKFFERDGTLVPGIIAGLMFGCEFVLIFTGLVFTSASRASVFLYTA 120 GALPV+L+ LRGV+ FERDGTL G+IAG +FG EFVLI+ GL+ TSASRA VFLYTA Sbjct: 55 GALPVLLVFAQLRGVRMFERDGTLWLGLIAGALFGFEFVLIYQGLLLTSASRAVVFLYTA 114 Query: 121 PFFVALGSHQFLGERLSTVQWSGLALSFAGVALAIGVPQPNVDAKVLLGDLMVVGGGALW 180 PFFVALGS +FLGERL QW GLA+SF GVALAIG+PQ NVD++VLLGDL+VVGGG LW Sbjct: 115 PFFVALGSFRFLGERLGPAQWGGLAMSFTGVALAIGIPQANVDSRVLLGDLLVVGGGLLW 174 Query: 181 AATTLVAKGTGWRKAAPEKALGYQVAISIPILGLAAWIAGERIEHVPSALSISLLAYQAV 240 TT+ KGT R APE+ALGYQVA+S+PI+ AA IAGER+ HVPS + LLAYQA+ Sbjct: 175 GVTTVFIKGTRMRLIAPERALGYQVAVSVPIMAAAALIAGERLTHVPSPFVLGLLAYQAI 234 Query: 241 WVVGCTFVIWFAMVKTYSASKLSAFTFVTPLFGVVAAYFIMHDTLTAVFGVAALLVIAGL 300 WVVG TF IWFA++K YSASKLSAFTF+TPLFGVVA+YFI+HD LT FG+AA+LVI GL Sbjct: 235 WVVGTTFTIWFALIKAYSASKLSAFTFITPLFGVVASYFILHDALTLAFGLAAVLVIIGL 294 Query: 301 YLVNKPDPKV--TPDP 314 +LVN+P+ V DP Sbjct: 295 FLVNRPNRAVAAATDP 310 >ref|YP_001243386.1| DMT family permease [Bradyrhizobium sp. BTAi1] gb|ABQ39480.1| putative permease (drug-metabolite transporter DMT family) [Bradyrhizobium sp. BTAi1] Length = 317 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 208/316 (65%), Positives = 249/316 (78%), Gaps = 8/316 (2%) Query: 1 MSTQAISASVTRPVSVGHGLPPGAIAVMLMLCVSWGFNQLAVKLALPDVPPMLQALIRSA 60 MS + + TRP L PGAIA++L+LC+SW FNQ+A+KLALP++PP+LQA RSA Sbjct: 1 MSANSSPPAGTRP------LGPGAIAIVLVLCLSWAFNQIAIKLALPEIPPLLQATFRSA 54 Query: 61 GALPVMLIVGHLRGVKFFERDGTLVPGIIAGLMFGCEFVLIFTGLVFTSASRASVFLYTA 120 GALPV+LI LRGVK FERDGTL G++AG +FG EFVLI+ GL+ TSASRA VFLYTA Sbjct: 55 GALPVLLIFAQLRGVKMFERDGTLGLGLVAGALFGFEFVLIYQGLLLTSASRAVVFLYTA 114 Query: 121 PFFVALGSHQFLGERLSTVQWSGLALSFAGVALAIGVPQPNVDAKVLLGDLMVVGGGALW 180 PFFVALGS +FLGERL QW GLA+SF GVALAIG+PQ NVD +VLLGDL+VVGGG LW Sbjct: 115 PFFVALGSFRFLGERLGPAQWGGLAMSFTGVALAIGIPQANVDGRVLLGDLLVVGGGLLW 174 Query: 181 AATTLVAKGTGWRKAAPEKALGYQVAISIPILGLAAWIAGERIEHVPSALSISLLAYQAV 240 TT+ KGT R APE+ALGYQV +S+PI+ AA IAGER+ VPS I L+AYQ++ Sbjct: 175 GVTTVFVKGTRLRFIAPERALGYQVGVSVPIMAAAALIAGERLAQVPSPFVIGLMAYQSI 234 Query: 241 WVVGCTFVIWFAMVKTYSASKLSAFTFVTPLFGVVAAYFIMHDTLTAVFGVAALLVIAGL 300 WVVG TF IWFA++K YSASKLSAFTF+TPLFGVVA+YFI+HD LT FG+AA+LVI GL Sbjct: 235 WVVGTTFTIWFALIKAYSASKLSAFTFITPLFGVVASYFILHDALTLAFGLAAVLVIIGL 294 Query: 301 YLVNKPDPKV--TPDP 314 +LVN+P+ V DP Sbjct: 295 FLVNRPNRAVLAATDP 310 >ref|YP_779126.1| hypothetical protein RPE_0186 [Rhodopseudomonas palustris BisA53] gb|ABJ04146.1| protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris BisA53] Length = 320 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/298 (69%), Positives = 242/298 (81%) Query: 17 GHGLPPGAIAVMLMLCVSWGFNQLAVKLALPDVPPMLQALIRSAGALPVMLIVGHLRGVK 76 G L GA+A+ML+ C+SWGFNQ+AVKL LP++PP LQA IRS+GAL V+L+V R VK Sbjct: 12 GRPLTLGAVALMLLCCLSWGFNQIAVKLVLPEIPPFLQATIRSSGALVVILLVAWSRNVK 71 Query: 77 FFERDGTLVPGIIAGLMFGCEFVLIFTGLVFTSASRASVFLYTAPFFVALGSHQFLGERL 136 F+RDGTL G+ AG++FG EFVLI+ GL+ T+ASRA+VFLYTAPFFVALGS+ FL ERL Sbjct: 72 LFQRDGTLKAGLFAGVLFGLEFVLIYRGLLLTTASRAAVFLYTAPFFVALGSYHFLHERL 131 Query: 137 STVQWSGLALSFAGVALAIGVPQPNVDAKVLLGDLMVVGGGALWAATTLVAKGTGWRKAA 196 +QW+GLALSFAGVALAIGVPQPNVDA VLLGDLM+VGGGALWAATTL+ K T +A Sbjct: 132 RRLQWAGLALSFAGVALAIGVPQPNVDASVLLGDLMLVGGGALWAATTLIVKSTALGRAP 191 Query: 197 PEKALGYQVAISIPILGLAAWIAGERIEHVPSALSISLLAYQAVWVVGCTFVIWFAMVKT 256 EK LGYQVAISIPIL AAW+A E I +P LS++L+AYQA+WVVG TF+IWF ++KT Sbjct: 192 AEKGLGYQVAISIPILAAAAWLADETIPAMPGPLSLALMAYQAIWVVGLTFLIWFGLIKT 251 Query: 257 YSASKLSAFTFVTPLFGVVAAYFIMHDTLTAVFGVAALLVIAGLYLVNKPDPKVTPDP 314 YSAS LSAFTF+TPLFGV A Y +MHD LT FGVAALLVIAGLYLVN+P P P Sbjct: 252 YSASTLSAFTFITPLFGVAAGYVVMHDPLTPAFGVAALLVIAGLYLVNRPAKSSAPIP 309 >ref|YP_567457.1| hypothetical protein RPD_0318 [Rhodopseudomonas palustris BisB5] gb|ABE37556.1| protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris BisB5] Length = 304 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/307 (66%), Positives = 247/307 (80%), Gaps = 6/307 (1%) Query: 4 QAISASVTRPVSVGHGLPPGAIAVMLMLCVSWGFNQLAVKLALPDVPPMLQALIRSAGAL 63 +IS++V RP+S G AIA+ML+ C SWGFNQ+AVKL LP++PP LQA +RS L Sbjct: 2 SSISSAVARPLSAG------AIALMLLCCFSWGFNQIAVKLVLPEIPPFLQAAMRSIAGL 55 Query: 64 PVMLIVGHLRGVKFFERDGTLVPGIIAGLMFGCEFVLIFTGLVFTSASRASVFLYTAPFF 123 V+LI+ RGVK F+RDGTL G++AG++FG EFVLI+ GL+ T+ASR VFLYTAPF Sbjct: 56 IVILIIAWARGVKLFQRDGTLKAGLLAGVLFGIEFVLIYRGLLLTTASRGVVFLYTAPFI 115 Query: 124 VALGSHQFLGERLSTVQWSGLALSFAGVALAIGVPQPNVDAKVLLGDLMVVGGGALWAAT 183 VALGS+ FLGERL T+QW+GLALSFAGVALAIGVPQP+VDA VL+GDLM+VGGGA+W AT Sbjct: 116 VALGSYHFLGERLRTLQWAGLALSFAGVALAIGVPQPDVDATVLIGDLMLVGGGAMWGAT 175 Query: 184 TLVAKGTGWRKAAPEKALGYQVAISIPILGLAAWIAGERIEHVPSALSISLLAYQAVWVV 243 TL+ K + ++A EK L YQVAISIPIL LAA I+GE I+ +P LS++L+AYQ++WVV Sbjct: 176 TLIVKASRLQQAPAEKGLAYQVAISIPILLLAALISGETIDKMPGPLSLTLMAYQSIWVV 235 Query: 244 GCTFVIWFAMVKTYSASKLSAFTFVTPLFGVVAAYFIMHDTLTAVFGVAALLVIAGLYLV 303 G TF++WF +VKTYSASKLSAFTF+TPLFGV A Y IMHD L FGVAALLVIAGLYLV Sbjct: 236 GLTFLLWFGLVKTYSASKLSAFTFITPLFGVAAGYLIMHDPLNPAFGVAALLVIAGLYLV 295 Query: 304 NKPDPKV 310 N+P V Sbjct: 296 NRPAKAV 302