BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0076.0001.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241952.1| shikimate 5-dehydrogenase [Bradyrhizobium sp... 300 1e-79 ref|NP_767699.1| shikimate 5-dehydrogenase [Bradyrhizobium japon... 298 4e-79 ref|YP_001207487.1| shikimate 5-dehydrogenase [Bradyrhizobium sp... 295 4e-78 ref|YP_001771517.1| shikimate 5-dehydrogenase [Methylobacterium ... 256 1e-66 ref|YP_002495470.1| shikimate 5-dehydrogenase [Methylobacterium ... 245 3e-63 >ref|YP_001241952.1| shikimate 5-dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ38046.1| shikimate dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 293 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 152/229 (66%), Positives = 178/229 (77%) Query: 1 MLEGIRRLGFAGVNVTFPYKEAVVDLIDSLAPDARAIGAVNTIVVDDARLVGHNTDASGF 60 +LEG+RRLGFAGVNVT+PYKEAVV+L+D LAP A A+GAVNT+VV D RL+GHNTD +GF Sbjct: 59 LLEGVRRLGFAGVNVTYPYKEAVVELLDELAPKAAAMGAVNTVVVRDGRLIGHNTDTTGF 118 Query: 61 VRAITPLLASTPRGPIALIGAGGVGKAIAFALAGLGVGELRIFDADAAKVARLAGQLAGR 120 RA+ PLL+ T RG +ALIGAGGVGKAIAFALA L V LRI+D + A+ RLA L Sbjct: 119 ERAVAPLLSQTGRGAVALIGAGGVGKAIAFALANLNVAGLRIYDTERARAERLARLLPAS 178 Query: 121 HAVRGVAGVEAAVDGATGVVNATPVGMLPNRDSPVPDALLHPSMWVADAVYTPLWTPLLL 180 V VE A+ GA GVVN TP+GMLPNR +PVPD LL +WVADAVY+PLWTPLL Sbjct: 179 TGAVVVDSVERALQGAAGVVNGTPIGMLPNRGTPVPDHLLRTDLWVADAVYSPLWTPLLK 238 Query: 181 AAKAKGSKVLTGRDLAIYAAADAFELFTTMMPSTDVMANAFDAVMAARY 229 AAKA+G++VL GR+LAIY AADAFELFT + PST+ M AFD MA RY Sbjct: 239 AAKARGAQVLLGRELAIYQAADAFELFTGLAPSTEAMGAAFDNHMAERY 287 >ref|NP_767699.1| shikimate 5-dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC46324.1| shikimate 5-dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 292 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 155/231 (67%), Positives = 182/231 (78%), Gaps = 3/231 (1%) Query: 1 MLEGIRRLGFAGVNVTFPYKEAVVDLIDSLAPDARAIGAVNTIVVDDARLVGHNTDASGF 60 MLEG+RRLGFAGVNVT+PYKEAVV L+D+LAP A A+GAVNT+VV D RL GHNTD +GF Sbjct: 59 MLEGVRRLGFAGVNVTYPYKEAVVPLLDALAPGAAAMGAVNTVVVRDGRLTGHNTDTTGF 118 Query: 61 VRAITPLLASTPRG-PIALIGAGGVGKAIAFALAGLGVGELRIFDADAAKVARLAGQLAG 119 RA+ PLLA P G +A+IG GGVGKAIAFALA L V +LRIFD++ A+ +LA LA Sbjct: 119 ARAVAPLLA--PSGNAVAVIGTGGVGKAIAFALASLEVADLRIFDSEPARAEKLAALLAK 176 Query: 120 RHAVRGVAGVEAAVDGATGVVNATPVGMLPNRDSPVPDALLHPSMWVADAVYTPLWTPLL 179 R VE A+DGATG+VN TPVGMLPNR PVP ALLH +WVADAVY+PL TPLL Sbjct: 177 HGGARVAKSVEDALDGATGLVNGTPVGMLPNRGMPVPAALLHEKLWVADAVYSPLITPLL 236 Query: 180 LAAKAKGSKVLTGRDLAIYAAADAFELFTTMMPSTDVMANAFDAVMAARYS 230 AA+ +G+K++TGR+LAIY AADAFELFT + PST+VM AFD VMAAR S Sbjct: 237 AAAQERGAKIMTGRELAIYQAADAFELFTGLAPSTEVMGEAFDEVMAARSS 287 >ref|YP_001207487.1| shikimate 5-dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL79270.1| Putative Shikimate dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 293 Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 148/230 (64%), Positives = 178/230 (77%) Query: 1 MLEGIRRLGFAGVNVTFPYKEAVVDLIDSLAPDARAIGAVNTIVVDDARLVGHNTDASGF 60 +LEG+RRLGFAGVNVT+PYKEAVV+L+D LAP A A+GAVNT+VV D RL+GHNTD +GF Sbjct: 59 LLEGVRRLGFAGVNVTYPYKEAVVELLDELAPKAAAMGAVNTVVVRDGRLIGHNTDTTGF 118 Query: 61 VRAITPLLASTPRGPIALIGAGGVGKAIAFALAGLGVGELRIFDADAAKVARLAGQLAGR 120 RA+ PL+ + RG +ALIGAGGVGKAIAFALA L V LRI+D + A+ +LA + Sbjct: 119 ERAVAPLVGQSGRGVVALIGAGGVGKAIAFALANLEVAGLRIYDIERARAEKLAKLVRAG 178 Query: 121 HAVRGVAGVEAAVDGATGVVNATPVGMLPNRDSPVPDALLHPSMWVADAVYTPLWTPLLL 180 V V VE+A+ GA GVVN TP+GMLPNR +PV D LL +WVADAVY+PLWTPLL Sbjct: 179 TTVNVVDSVESALQGAVGVVNGTPIGMLPNRGTPVADHLLRDDLWVADAVYSPLWTPLLK 238 Query: 181 AAKAKGSKVLTGRDLAIYAAADAFELFTTMMPSTDVMANAFDAVMAARYS 230 AAKA+G++VL GR+LAIY AADAFELFT + PST+ M AFD MA RY Sbjct: 239 AAKARGAQVLLGRELAIYQAADAFELFTGLAPSTEAMGAAFDNHMAERYQ 288 >ref|YP_001771517.1| shikimate 5-dehydrogenase [Methylobacterium sp. 4-46] gb|ACA19083.1| shikimate 5-dehydrogenase [Methylobacterium sp. 4-46] Length = 285 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 139/228 (60%), Positives = 168/228 (73%) Query: 1 MLEGIRRLGFAGVNVTFPYKEAVVDLIDSLAPDARAIGAVNTIVVDDARLVGHNTDASGF 60 +L+G+R LGFAGVNVTFPYKEAV+ L+D L+P ARA+GAVNT+VV+ RL+GHNTDASGF Sbjct: 56 LLDGVRHLGFAGVNVTFPYKEAVLPLLDDLSPGARAVGAVNTVVVEGGRLIGHNTDASGF 115 Query: 61 VRAITPLLASTPRGPIALIGAGGVGKAIAFALAGLGVGELRIFDADAAKVARLAGQLAGR 120 RA+ P GP+ALIGAGGVGKAIA AL+ + E+R+ D D AK LA L GR Sbjct: 116 GRALVQTFGPAPAGPVALIGAGGVGKAIAVALSDVPGTEIRLVDTDPAKARALAASLDGR 175 Query: 121 HAVRGVAGVEAAVDGATGVVNATPVGMLPNRDSPVPDALLHPSMWVADAVYTPLWTPLLL 180 +R AG E A+ GA G+VN TP+GMLPNRD+PVP LL P +WVADAVY+PLWTPLL Sbjct: 176 AEIRVCAGAEEALAGARGLVNGTPIGMLPNRDAPVPLHLLRPDLWVADAVYSPLWTPLLT 235 Query: 181 AAKAKGSKVLTGRDLAIYAAADAFELFTTMMPSTDVMANAFDAVMAAR 228 AA+A G+ +TGR LAI+ A DAF LFT M AFDA++AAR Sbjct: 236 AARALGAPTMTGRALAIHQALDAFRLFTGREAPQAAMERAFDAIIAAR 283 >ref|YP_002495470.1| shikimate 5-dehydrogenase [Methylobacterium nodulans ORS 2060] gb|ACL55167.1| shikimate 5-dehydrogenase [Methylobacterium nodulans ORS 2060] Length = 296 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 137/208 (65%), Positives = 158/208 (75%) Query: 1 MLEGIRRLGFAGVNVTFPYKEAVVDLIDSLAPDARAIGAVNTIVVDDARLVGHNTDASGF 60 +L+G+R +GFAG NVTFPYKEAVV L+D L+ ARA+GAVNTIVV+D RLVGHNTDASGF Sbjct: 56 LLDGLRLIGFAGANVTFPYKEAVVPLLDDLSEGARAVGAVNTIVVEDGRLVGHNTDASGF 115 Query: 61 VRAITPLLASTPRGPIALIGAGGVGKAIAFALAGLGVGELRIFDADAAKVARLAGQLAGR 120 RA+T PRGP+ALIGAGGVGKAIA AL+G E+R+ D D AK A LA LA R Sbjct: 116 ARALTQRFGPAPRGPVALIGAGGVGKAIAVALSGFPGLEIRLVDRDPAKAASLAAALAPR 175 Query: 121 HAVRGVAGVEAAVDGATGVVNATPVGMLPNRDSPVPDALLHPSMWVADAVYTPLWTPLLL 180 A+R VE A+DGA G+VN TPVGMLPNR SPVP LL P +WVADAVY+PLWTPLL Sbjct: 176 AALRVCGTVEQALDGAGGLVNGTPVGMLPNRGSPVPPHLLRPEIWVADAVYSPLWTPLLR 235 Query: 181 AAKAKGSKVLTGRDLAIYAAADAFELFT 208 A G+ +TGRDLAI+ A DAF LFT Sbjct: 236 EAARLGAPTMTGRDLAIHQAVDAFRLFT 263