BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0057.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774335.1| outer-membrane immunogenic protein [Bradyrhizob... 316 2e-84 ref|NP_771814.1| hypothetical protein blr5174 [Bradyrhizobium ja... 295 5e-78 ref|NP_773164.1| hypothetical protein bll6524 [Bradyrhizobium ja... 270 2e-70 ref|ZP_01046476.1| putative outer-membrane protein precursor [Ni... 241 8e-62 ref|YP_318180.1| putative outer-membrane protein precursor [Nitr... 241 1e-61 >ref|NP_774335.1| outer-membrane immunogenic protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52960.1| blr7695 [Bradyrhizobium japonicum USDA 110] Length = 288 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 165/256 (64%), Positives = 201/256 (78%), Gaps = 9/256 (3%) Query: 1 MKRFLLSVAAI--VGMATPALSADMAVK---AAPVPVPPPVYNWTGFYIGANGGWGESRT 55 MK+ L++ A + VG++ PA +AD+A + AP PV P+Y+WTGFYIGANGGWG+S + Sbjct: 36 MKKLLIAAAGMMAVGLSAPASAADLAARPYTKAPPPVVAPIYDWTGFYIGANGGWGQSHS 95 Query: 56 CWDFLPALGGVVADGCSSRSGGVFGGQLGYRWQAGQFVFGLEGQGDWADLKSSRLSLIDP 115 C DF+ ALG VA GC RSGGV GGQ+GYRWQ QFVFGLE QGDWADLK++R+SL +P Sbjct: 96 CVDFVTALG-TVASGCGDRSGGVVGGQIGYRWQTSQFVFGLEAQGDWADLKNTRVSLFNP 154 Query: 116 RFSTTTKTDGLGLFTGQLGWAWDAALFYVKGGAAVTSNRYDIWTTVGGIGVASATSTRWG 175 STT KTD +GLFTGQLGWAW++AL YVKGGAAVTSNR I+ GIG+ SA +TRWG Sbjct: 155 TLSTTAKTDAIGLFTGQLGWAWNSALLYVKGGAAVTSNRLTIFDNTTGIGLVSADNTRWG 214 Query: 176 GTVGVGFEYGFTPNWSVGLEYDRLFMGDANNTFSVVNPIVAGAAN-RIGQDVDLLTIRLN 234 GT+GVGFEYGFTPNWSVG+EYD L+MG ANN+FSVV+P +A N RI QDVD++T+R N Sbjct: 215 GTLGVGFEYGFTPNWSVGVEYDHLWMGHANNSFSVVDPRLAAVLNDRISQDVDMVTVRFN 274 Query: 235 YRFGGFFFXGPVVARY 250 YRFGG + P+ ARY Sbjct: 275 YRFGG--YGAPIAARY 288 >ref|NP_771814.1| hypothetical protein blr5174 [Bradyrhizobium japonicum USDA 110] dbj|BAC50439.1| blr5174 [Bradyrhizobium japonicum USDA 110] Length = 256 Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 154/259 (59%), Positives = 197/259 (76%), Gaps = 12/259 (4%) Query: 1 MKRFLLSVAAI--VGMATPALSADMAVK---AAPVPVPPPVYNWTGFYIGANGGWGESRT 55 MK+ L++ A + VG++ PA +AD+A + AP P+ P+Y+WTGFYIGANGGWG+SR Sbjct: 1 MKKLLVAAAGMMAVGLSAPASAADLAARPYTKAPPPIVAPIYDWTGFYIGANGGWGQSRG 60 Query: 56 CWDFLPALGGVVADGCSSRSGGVFGGQLGYRWQAGQFVFGLEGQGDWADLKSSRLSLIDP 115 C DF+ L G VA GC+SRSGG+ GGQ+GYRWQ QFV GLE QGDWAD+K++R+SLIDP Sbjct: 61 CVDFV-TLAGTVAGGCASRSGGLVGGQIGYRWQTNQFVLGLEAQGDWADIKNTRVSLIDP 119 Query: 116 RFSTTTKTDGLGLFTGQLGWAWDAALFYVKGGAAVTSNRYDIWTTVGGIGVASATSTRWG 175 STT KTDG+GLFT QLGWAW+A+L YVKGGAAVT NR D++ + G+G+ SA+ TRWG Sbjct: 120 LLSTTGKTDGIGLFTAQLGWAWNASLLYVKGGAAVTHNRLDVFNNLTGVGLDSASHTRWG 179 Query: 176 GTVGVGFEYGFTPNWSVGLEYDRLFMGDANNTFSVVNPIVAGAA----NRIGQDVDLLTI 231 G +GVG+EYGF PNWSVG+EYD L+MG+ N TF+ + G +R+ QDVD++T+ Sbjct: 180 GALGVGWEYGFAPNWSVGVEYDHLWMGNDNRTFAGAGVLSPGGVTLLGDRVSQDVDMVTV 239 Query: 232 RLNYRFGGFFFXGPVVARY 250 RLNYRFGG F P+ ARY Sbjct: 240 RLNYRFGG--FGAPIAARY 256 >ref|NP_773164.1| hypothetical protein bll6524 [Bradyrhizobium japonicum USDA 110] dbj|BAC51789.1| bll6524 [Bradyrhizobium japonicum USDA 110] Length = 271 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 142/219 (64%), Positives = 170/219 (77%), Gaps = 11/219 (5%) Query: 37 YNWTGFYIGANGGWGESRTCWDFL-PALGGVVADGCSSRSGGVFGGQLGYRWQAGQFVFG 95 YNW+GFYIGANGGWG+S C DF+ PA G VA GC+ RSGG+ GGQ+GYRWQ QFV G Sbjct: 59 YNWSGFYIGANGGWGQSHGCVDFVTPA--GTVAGGCADRSGGLAGGQIGYRWQTNQFVLG 116 Query: 96 LEGQGDWADLKSSRLSLIDPRFSTTTKTDGLGLFTGQLGWAWDAALFYVKGGAAVTSNRY 155 LE QGDWA++K++R+SLIDP STT KTD +GLFT QLGWAW+A+LFYVKGGAAVT NR+ Sbjct: 117 LEAQGDWAEIKNTRVSLIDPLISTTGKTDAIGLFTAQLGWAWNASLFYVKGGAAVTRNRF 176 Query: 156 DIWTTVGGIGVASATSTRWGGTVGVGFEYGFTPNWSVGLEYDRLFMGDANNTFS-VVNP- 213 DI+ V G+G+ASA TRWGG +GVG+EYGF PNWS G+EYD L+MG N F+ VV P Sbjct: 177 DIFNNVTGVGLASAGHTRWGGALGVGWEYGFAPNWSAGIEYDHLWMGRDNFGFAGVVTPG 236 Query: 214 --IVAGAANRIGQDVDLLTIRLNYRFGGFFFXGPVVARY 250 + G+ I QDVD++T+RLNYRFGG F PV ARY Sbjct: 237 GLTLTGSG--ISQDVDMVTLRLNYRFGG--FGAPVAARY 271 >ref|ZP_01046476.1| putative outer-membrane protein precursor [Nitrobacter sp. Nb-311A] gb|EAQ35566.1| putative outer-membrane protein precursor [Nitrobacter sp. Nb-311A] Length = 257 Score = 241 bits (615), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 127/231 (54%), Positives = 156/231 (67%), Gaps = 15/231 (6%) Query: 28 APVPVPPPVYNWTGFYIGANGGWGESRTCWDFLPALGGVVA-DGCSSRSGGVFGGQLGYR 86 AP P+ +Y+W+GFYIGANGGWG SR CW+F G VA +GC +GG GGQ+GYR Sbjct: 34 APPPMMAAIYDWSGFYIGANGGWGSSRNCWNFTTPAGAFVANEGCHDATGGTAGGQIGYR 93 Query: 87 WQAGQFVFGLEGQGDWADLKSSRLSLIDPRFSTTTKTDGLGLFTGQLGWAWDAALFYVKG 146 WQ+ +VFGLE QG+WADL R SL P F+ + GLFTGQ+G+AWDA L YVKG Sbjct: 94 WQSTNWVFGLEAQGNWADLSGRRASLAFPAFTNDSHLGAFGLFTGQIGYAWDATLLYVKG 153 Query: 147 GAAVTSNRYDIWTTVGGIGVAS-ATSTRWGGTVGVGFEYGFTPNWSVGLEYDRLFMGDAN 205 GAAVTSNRY T+ G V + ++RWG TVGVG EYGF PNWS+ EYD +FMG++ Sbjct: 154 GAAVTSNRYRSLATLTGAQVTNDVNNSRWGATVGVGLEYGFAPNWSLAFEYDHIFMGNSR 213 Query: 206 NTFSVVNPIVAGAA------NRIGQDVDLLTIRLNYRFGGFFFXGPVVARY 250 TF +N VAGAA + I QDVDL+T R+NYR+G GP +ARY Sbjct: 214 TTF--INNGVAGAAGTLFGTDNISQDVDLVTARINYRWG-----GPAIARY 257 >ref|YP_318180.1| putative outer-membrane protein precursor [Nitrobacter winogradskyi Nb-255] gb|ABA04828.1| putative outer-membrane protein precursor [Nitrobacter winogradskyi Nb-255] Length = 258 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/231 (54%), Positives = 156/231 (67%), Gaps = 15/231 (6%) Query: 28 APVPVPPPVYNWTGFYIGANGGWGESRTCWDFLPALGGVVA-DGCSSRSGGVFGGQLGYR 86 AP P+ +Y+W+GFYIGANGGWG SR CWDF G VA +GC + +GG GGQ+GYR Sbjct: 35 APPPMMAAIYDWSGFYIGANGGWGSSRNCWDFTTPAGVFVANEGCHNATGGTAGGQIGYR 94 Query: 87 WQAGQFVFGLEGQGDWADLKSSRLSLIDPRFSTTTKTDGLGLFTGQLGWAWDAALFYVKG 146 WQA ++FGLE QG+WADL +SL P F+ + + GLFTGQ+G+AWDA L YVKG Sbjct: 95 WQATNWLFGLEAQGNWADLSGRNVSLAFPAFTNNSNLNAFGLFTGQIGYAWDATLLYVKG 154 Query: 147 GAAVTSNRYDIWTTVGGI-GVASATSTRWGGTVGVGFEYGFTPNWSVGLEYDRLFMGDAN 205 GAAVTSNRY T G+ S + RWG VGVG EYGF PNWS+ EYD +FMG++ Sbjct: 155 GAAVTSNRYRSLVTATGVQATDSVNNNRWGAVVGVGLEYGFAPNWSLAFEYDHIFMGNSR 214 Query: 206 NTFSVVNPIVAGAA------NRIGQDVDLLTIRLNYRFGGFFFXGPVVARY 250 +TF+ N VAGAA + I QDVD++T R+NYR+G GP +ARY Sbjct: 215 HTFT--NNGVAGAAGTLFGTDNISQDVDIVTARINYRWG-----GPAIARY 258