BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0052.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576210.1| hypothetical protein Nham_0886 [Nitrobacter ham... 460 e-127 ref|ZP_01048407.1| hypothetical protein NB311A_16469 [Nitrobacte... 441 e-122 ref|NP_770127.1| hypothetical protein blr3487 [Bradyrhizobium ja... 436 e-120 ref|ZP_01048273.1| hypothetical protein NB311A_08849 [Nitrobacte... 311 8e-83 ref|YP_384160.1| hypothetical protein Gmet_1198 [Geobacter metal... 289 4e-76 >ref|YP_576210.1| hypothetical protein Nham_0886 [Nitrobacter hamburgensis X14] gb|ABE61750.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 308 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/303 (73%), Positives = 255/303 (84%), Gaps = 2/303 (0%) Query: 9 LDRIASIGVVAATALALLLSPARAQQGFPNPEDAASALATAVKAGTSRAMLKVLGRDAAD 68 + R AS G A A+AL + ++AQQ F +PEDAA+ LATAVK GTS A+LKVLGR A D Sbjct: 7 ISRAASTGATAIVAVALSIGVSQAQQAFSSPEDAATGLATAVKTGTS-AILKVLGRGAED 65 Query: 69 IIESGDDVADANARESFLSAYDARHSIKADGNKRATLILGRDDFPFPIPLVNNNDGWSFD 128 ++ESGD VAD +E FLSAYDA+HSIKA+GNK+ATLILG D+FPFPIPLVN GW FD Sbjct: 66 VVESGDSVADKEIQERFLSAYDAKHSIKAEGNKKATLILGADEFPFPIPLVNRKSGWEFD 125 Query: 129 AAAGRREILYRRIGRNELAAIQTCLAYVDAQNEYAEKDR-GEGVGAYAQRIVSRPGKTDG 187 AAGR EIL RRIGRNEL AIQ CLA+VDAQNEYA KDR GEGVG YAQRIVS PGK DG Sbjct: 126 TAAGRVEILSRRIGRNELDAIQACLAFVDAQNEYAGKDRTGEGVGVYAQRIVSNPGKKDG 185 Query: 188 LFWRDDKDPSPLGELAAQAAAEGYKVGEQSMPYHGYYYRILKAQGSDAPGGALNYVVRGK 247 LFWRDD+DPSPLGELAAQA++EGYKV +PYHGY++RIL+ QG+DA GGA NYVV+ K Sbjct: 186 LFWRDDRDPSPLGELAAQASSEGYKVDGHGVPYHGYFFRILRGQGADALGGAFNYVVKRK 245 Query: 248 MIGGFALVAYPAEYGNSGVMTFLVNHAGTVYQKDLGSRTDFLAKRMIVFDPDQTWKKVDS 307 MIGGFAL+AYPAEYGNSGVMTF+VNHAGTVYQKDLG RT+ LAKR+I+FDPD+TWKK+D+ Sbjct: 246 MIGGFALIAYPAEYGNSGVMTFMVNHAGTVYQKDLGERTESLAKRIILFDPDRTWKKIDA 305 Query: 308 TNP 310 T P Sbjct: 306 TKP 308 >ref|ZP_01048407.1| hypothetical protein NB311A_16469 [Nitrobacter sp. Nb-311A] gb|EAQ33615.1| hypothetical protein NB311A_16469 [Nitrobacter sp. Nb-311A] Length = 313 Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/303 (69%), Positives = 248/303 (81%), Gaps = 1/303 (0%) Query: 9 LDRIASIGVVAATALALLLSPARAQQGFPNPEDAASALATAVKAGTSRAMLKVLGRDAAD 68 + R ASIG A ++L + A+AQQ F +PEDAA LA AVK GT+ A+LKVLGR A D Sbjct: 7 MSRAASIGATAIVVVSLSIGAAQAQQAFSSPEDAAVGLAAAVKTGTTSAILKVLGRQAED 66 Query: 69 IIESGDDVADANARESFLSAYDARHSIKADGNKRATLILGRDDFPFPIPLVNNNDGWSFD 128 ++ESGD VAD RE FLSAY+A+H+IK +G+K+ATLILG D+FPFPIPLV D W+FD Sbjct: 67 LVESGDSVADEETRERFLSAYEAKHTIKDEGDKKATLILGADEFPFPIPLVKKKDAWTFD 126 Query: 129 AAAGRREILYRRIGRNELAAIQTCLAYVDAQNEYAEKDR-GEGVGAYAQRIVSRPGKTDG 187 AAGR EILYRRIGRNEL AIQT LA+VDAQNEYAEKDR GEGVG YAQRIVS PGK DG Sbjct: 127 TAAGRAEILYRRIGRNELDAIQTSLAFVDAQNEYAEKDRTGEGVGVYAQRIVSSPGKKDG 186 Query: 188 LFWRDDKDPSPLGELAAQAAAEGYKVGEQSMPYHGYYYRILKAQGSDAPGGALNYVVRGK 247 LFWRDD+DPSPLGELAA+A++EGYKV Q PYHGY++RIL+ QG +A GGA +YVV+ K Sbjct: 187 LFWRDDRDPSPLGELAARASSEGYKVDGQGAPYHGYFFRILRGQGPNAQGGAFDYVVKRK 246 Query: 248 MIGGFALVAYPAEYGNSGVMTFLVNHAGTVYQKDLGSRTDFLAKRMIVFDPDQTWKKVDS 307 MIGGFAL+AYPAEYGNSGVMTF+VNHAGTV+QKDLG +T LA+R+ +F PD+TWKKV+ Sbjct: 247 MIGGFALIAYPAEYGNSGVMTFMVNHAGTVFQKDLGKKTKLLAERIQLFGPDRTWKKVEP 306 Query: 308 TNP 310 P Sbjct: 307 AKP 309 >ref|NP_770127.1| hypothetical protein blr3487 [Bradyrhizobium japonicum USDA 110] dbj|BAC48752.1| blr3487 [Bradyrhizobium japonicum USDA 110] Length = 305 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/303 (73%), Positives = 251/303 (82%), Gaps = 5/303 (1%) Query: 9 LDRIASIGVVAATALALLLSPARAQQGFPNPEDAASALATAVKAGTSRAMLKVLGRDAAD 68 L R A G++A L LL S A AQQ F PEDAA+ALA+AVK G + +LKVLGR A D Sbjct: 7 LHRAALPGIMA---LVLLSSTAPAQQSFSTPEDAAAALASAVKGGPAD-ILKVLGRAADD 62 Query: 69 IIESGDDVADANARESFLSAYDARHSIKADGNKRATLILGRDDFPFPIPLVNNNDGWSFD 128 I+ SGD+VADA+ R+ F S YDA+HSIKA+GNK+ATL+LG DDFPFPIPLVN GW FD Sbjct: 63 IVSSGDEVADADIRQRFTSMYDAKHSIKAEGNKKATLMLGPDDFPFPIPLVNAKSGWEFD 122 Query: 129 AAAGRREILYRRIGRNELAAIQTCLAYVDAQNEYAEKDRGEGVGAYAQRIVSRPGKTDGL 188 A GR E+LYRRIGRNEL AIQT LAYVDAQNEYA+KDRGEGVG YAQRIVS PGK DGL Sbjct: 123 TAEGRIEVLYRRIGRNELDAIQTALAYVDAQNEYADKDRGEGVGVYAQRIVSSPGKKDGL 182 Query: 189 FWRDDKDPSPLGELAAQAAAEGYKVGE-QSMPYHGYYYRILKAQGSDAPGGALNYVVRGK 247 FWRDD DPSPLG LAA+A+AEGYK G + PYHGYY+RILK QG+DAPGGALNYVV+GK Sbjct: 183 FWRDDSDPSPLGALAAEASAEGYKAGSAEPSPYHGYYFRILKGQGADAPGGALNYVVKGK 242 Query: 248 MIGGFALVAYPAEYGNSGVMTFLVNHAGTVYQKDLGSRTDFLAKRMIVFDPDQTWKKVDS 307 MIGGFAL+A+PAEYGNSGVMTFLVNHAGTVYQKDLG RT+ +A+R +FDPDQTWKKVD+ Sbjct: 243 MIGGFALIAWPAEYGNSGVMTFLVNHAGTVYQKDLGERTESIAQRTTLFDPDQTWKKVDA 302 Query: 308 TNP 310 P Sbjct: 303 AKP 305 >ref|ZP_01048273.1| hypothetical protein NB311A_08849 [Nitrobacter sp. Nb-311A] gb|EAQ33764.1| hypothetical protein NB311A_08849 [Nitrobacter sp. Nb-311A] Length = 345 Score = 311 bits (797), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 159/288 (55%), Positives = 200/288 (69%), Gaps = 3/288 (1%) Query: 25 LLLSPARAQQGFPNPEDAASALATAVKAGTSRAMLKVLGRDAADIIESGDDVADANARES 84 L A AQ F PE+AA LA AV++G + +L +LG D DI+ SGD + D R Sbjct: 53 CLQQAAFAQAKFVTPEEAADKLAAAVRSGAEKGILHILGPDGKDILSSGDTIEDEKTRSL 112 Query: 85 FLSAYDARHSIKADGNKRATLILGRDDFPFPIPLVNNNDGWSFDAAAGRREILYRRIGRN 144 FL+A+D RH + + + A L++G D+P PIP++ + WSFDAAAGRREILYRRIGRN Sbjct: 113 FLTAFDLRHQVVKEDDDEAALVVGSQDWPMPIPIIRRDGKWSFDAAAGRREILYRRIGRN 172 Query: 145 ELAAIQTCLAYVDAQNEYAEKD-RGEGVGAYAQRIVSRPGKTDGLFW--RDDKDPSPLGE 201 EL AIQ LAYVDAQN+Y + + AYAQ+++S GK DGL+W ++ SPLG Sbjct: 173 ELQAIQVSLAYVDAQNDYIDMNPEKSDPPAYAQKVISSEGKKDGLYWPAAANESESPLGA 232 Query: 202 LAAQAAAEGYKVGEQSMPYHGYYYRILKAQGSDAPGGALNYVVRGKMIGGFALVAYPAEY 261 A A A GY++ + P++GYYY+IL AQG+ APGGA+NYVV GKMIGGFAL+AYPA Y Sbjct: 233 AFALATAAGYRLTGERTPFYGYYYKILPAQGTKAPGGAVNYVVNGKMIGGFALIAYPAVY 292 Query: 262 GNSGVMTFLVNHAGTVYQKDLGSRTDFLAKRMIVFDPDQTWKKVDSTN 309 GNSGVMTFLVNH G VYQKDLG +TD +A + F+PDQTWKKV N Sbjct: 293 GNSGVMTFLVNHDGVVYQKDLGEKTDEIASDINKFNPDQTWKKVPGEN 340 >ref|YP_384160.1| hypothetical protein Gmet_1198 [Geobacter metallireducens GS-15] gb|ABB31435.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 325 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 149/298 (50%), Positives = 196/298 (65%), Gaps = 7/298 (2%) Query: 17 VVAATALALLLSPARA----QQGFPNPEDAASALATAVKAGTSRAMLKVLGRDAADIIES 72 V A +++ +P+ A Q+ F P++A AL AV+ G R + +LG + D+I S Sbjct: 21 VAVAMIFSVISTPSFAAQTRQKKFATPDNAVKALVAAVREGNERDLTLILGPGSKDLISS 80 Query: 73 GDDVADANARESFLSAYDARHSIKADGNKRATLILGRDDFPFPIPLVNNNDGWSFDAAAG 132 GD+VAD RE FL+AYD +S++ L +G D++P PIP+V W+F+ G Sbjct: 81 GDEVADKTDREKFLAAYDRMNSLERKSATVMVLHVGPDNWPMPIPIVKKGGKWAFNIGTG 140 Query: 133 RREILYRRIGRNELAAIQTCLAYVDAQNEYAEKD-RGEGVGAYAQRIVSRPGKTDGLFW- 190 ++EIL RRIGRNEL I AYVDAQ EYA KD RG G +AQ+++S GK DGL+W Sbjct: 141 KKEILKRRIGRNELHVIDVLDAYVDAQQEYAGKDCRGGGKVEFAQKLISSEGKRDGLYWE 200 Query: 191 -RDDKDPSPLGELAAQAAAEGYKVGEQSMPYHGYYYRILKAQGSDAPGGALNYVVRGKMI 249 ++ + SPLG L A+AA EGY P+HGYY++ILK QG A GGA YVV+ +MI Sbjct: 201 AKEGEPESPLGPLVARAAKEGYAKESNLSPFHGYYFKILKGQGKHAAGGAYQYVVKERMI 260 Query: 250 GGFALVAYPAEYGNSGVMTFLVNHAGTVYQKDLGSRTDFLAKRMIVFDPDQTWKKVDS 307 GFALVAYPAEYGNSGVMTF+VN AGTVY+K+LG T LA+ M +FDPD+TWK V + Sbjct: 261 LGFALVAYPAEYGNSGVMTFIVNQAGTVYEKNLGKNTRRLAEAMELFDPDKTWKPVKT 318