BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0047.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_576205.1| hypothetical protein Nham_0881 [Nitrobacter ham...   178   2e-43
ref|NP_771719.1| hypothetical protein bll5079 [Bradyrhizobium ja...   114   7e-24
ref|YP_001768512.1| hypothetical protein M446_1577 [Methylobacte...    53   2e-05
ref|YP_002497553.1| hypothetical protein Mnod_2270 [Methylobacte...    49   2e-04
ref|YP_002420100.1| hypothetical protein Mchl_1287 [Methylobacte...    47   7e-04

>ref|YP_576205.1| hypothetical protein Nham_0881 [Nitrobacter hamburgensis X14]
 gb|ABE61745.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 139

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 94/118 (79%)

Query: 6   PGYAHAFDLTGAWATSAEQCRKVFAHKGRANQLTFTNFSGVYGGGFIAEPDRLRGKFENC 65
           P   +AF+L+GAWATS E C KVFA KGRANQ+ FTNFSG YGGGFIAE +RLRGK  NC
Sbjct: 22  PQAVNAFELSGAWATSTELCSKVFARKGRANQVGFTNFSGAYGGGFIAEANRLRGKSGNC 81

Query: 66  KIKSRKDDGQTINIIVGCASGIMVSNVQFFLKAVDDDTITRQFPGIEGMEVNYHRCKI 123
            IKS+ + GQT+N++V CASG+M+S +QFFLK +D DTI R FPGIE M V YHRC+I
Sbjct: 82  VIKSKNESGQTVNLVVACASGVMLSKIQFFLKVIDADTIIRDFPGIEEMNVEYHRCRI 139


>ref|NP_771719.1| hypothetical protein bll5079 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50344.1| bll5079 [Bradyrhizobium japonicum USDA 110]
          Length = 133

 Score =  114 bits (284), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 2/115 (1%)

Query: 9   AHAFDLTGAWATSAEQCRKVFAHKGRANQLTFTNFSGVYGGGFIAEPDRLRGKFENCKIK 68
           A A +LTGAWA+ A+ C +VF+ +G  + + FT  S +YG GFI E + +RGK  NC IK
Sbjct: 21  ASAIELTGAWASEADMCSQVFSKRG--SHVAFTEMSELYGSGFIIEGNSIRGKSANCTIK 78

Query: 69  SRKDDGQTINIIVGCASGIMVSNVQFFLKAVDDDTITRQFPGIEGMEVNYHRCKI 123
           S+K++  ++ I   CA+ IM  +++F LK +DD+ I+R FP I  M V + RC +
Sbjct: 79  SKKENAGSVEISAACATSIMNQDMKFVLKVIDDNNISRSFPDISDMSVKFTRCAM 133


>ref|YP_001768512.1| hypothetical protein M446_1577 [Methylobacterium sp. 4-46]
 gb|ACA16078.1| hypothetical protein M446_1577 [Methylobacterium sp. 4-46]
          Length = 143

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 4   GLPGYAHAFDLTGAWATSAEQCRKVFAHKGRANQLTFTNFSGVYGGGFIAEPDRLRGKFE 63
           GL GY       GAW      C +V++  G+    +F     ++   FI   +RLR    
Sbjct: 31  GLAGY------QGAWVLGGRDCAEVYSSAGKGT--SFRTPLDIFAPAFIVSGNRLRTPMA 82

Query: 64  NCKIKSRKDDGQTINIIVGCASGIMVSNVQFFLKAVDDDTITRQFPGIEGMEVNYHRCK 122
           +C+IKS +       +++ CA+ + V+ V+  L    + T+ R +   +   V Y RC 
Sbjct: 83  SCRIKSVRPVSDRQRLVLDCANVVAVNEVRVLLALGPNGTLKRYYGDQDPTGVEYRRCS 141


>ref|YP_002497553.1| hypothetical protein Mnod_2270 [Methylobacterium nodulans ORS 2060]
 gb|ACL57250.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 154

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 4   GLPGYAHAFDLTGAWATSAEQCRKVFAHKGRANQLTFTNFSGVYGGGFIAEPDRLRGKFE 63
           GL GY       GAW      C +V++  G+    +F     ++   FI   +RLR    
Sbjct: 42  GLSGY------QGAWVLEGRDCAEVYSSGGKGT--SFKKPLDIFAPAFIVSGNRLRTPMA 93

Query: 64  NCKIKSRKDDGQTINIIVGCASGIMVSNVQFFLKAVDDDTITRQFPGIEGMEVNYHRCK 122
           +C+IKS +  G    + + CA+ +  + V   +    +  + R +   +     Y RC 
Sbjct: 94  SCRIKSVRPTGDRQILALDCANTVAANEVTVLMAIAPNGVLRRYYNDQDPTGTTYQRCS 152


>ref|YP_002420100.1| hypothetical protein Mchl_1287 [Methylobacterium chloromethanicum
           CM4]
 gb|ACK82172.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
          Length = 142

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 16  GAWATSAEQCRKVFAHKGRANQLTFTNFSGVYGGGFIAEPDRLRGKFENCKIKSRKDDGQ 75
           GAW      C  VF+  G+     F     ++   FI    RL+     C IKS +  G 
Sbjct: 37  GAWVLEGRDCADVFSSAGKGR--AFKKPIDIFAPAFIVSGKRLKTPMATCSIKSVRPTGD 94

Query: 76  TINIIVGCASGIMVSNVQFFLKAVDDDTITRQFPGIEGMEVNYHRC 121
              +++ CA+ +    V+ ++    +  + R +   +     Y RC
Sbjct: 95  RQLLVLDCANAVAAQEVRVYMMPQQNGPLKRYYNEQDPAGTGYQRC 140