BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0042.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770118.1| hypothetical protein blr3478 [Bradyrhizobium ja...   158   2e-37
ref|ZP_01048410.1| hypothetical protein NB311A_16484 [Nitrobacte...   153   8e-36
ref|YP_576201.1| hypothetical protein Nham_0876 [Nitrobacter ham...   142   1e-32
ref|ZP_07026433.1| conserved hypothetical protein [Afipia sp. 1N...   103   1e-20
ref|ZP_07028541.1| conserved hypothetical protein [Afipia sp. 1N...   101   3e-20

>ref|NP_770118.1| hypothetical protein blr3478 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48743.1| blr3478 [Bradyrhizobium japonicum USDA 110]
          Length = 144

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/126 (91%), Positives = 119/126 (94%)

Query: 8   GFSTSSLAETGSVAVIFTKGGFIVGVGGGEGVLTLRGKRYPFTVSGMSVGFTIGASTTKL 67
           GFST S AETG VAV+FTKGGFIVGVGGGEGVL LRGK+YPFTVSGMSVGFTIGASTTKL
Sbjct: 19  GFSTPSRAETGQVAVVFTKGGFIVGVGGGEGVLLLRGKKYPFTVSGMSVGFTIGASTTKL 78

Query: 68  VGRALNLRGPASIEGTYSAAGAGGAIAAGAGGVQLQNANGVILQLSGPKVGAEVSAAVGG 127
           VGRALNLRGPASIEG+Y+  GAGGAIAAGAG VQLQNANGVILQLSGPKVGAEVSAAVGG
Sbjct: 79  VGRALNLRGPASIEGSYAVGGAGGAIAAGAGAVQLQNANGVILQLSGPKVGAEVSAAVGG 138

Query: 128 VTIRLK 133
           VTIRLK
Sbjct: 139 VTIRLK 144


>ref|ZP_01048410.1| hypothetical protein NB311A_16484 [Nitrobacter sp. Nb-311A]
 gb|EAQ33618.1| hypothetical protein NB311A_16484 [Nitrobacter sp. Nb-311A]
          Length = 134

 Score =  153 bits (387), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/134 (82%), Positives = 120/134 (89%), Gaps = 1/134 (0%)

Query: 1   MLAIGL-AGFSTSSLAETGSVAVIFTKGGFIVGVGGGEGVLTLRGKRYPFTVSGMSVGFT 59
           MLA+ + A  STS+ AETG V VIFTKGGF+VGVG GEGVLTLRG  YPFTVSGMSVGFT
Sbjct: 1   MLALLVGAAISTSARAETGRVVVIFTKGGFVVGVGAGEGVLTLRGTHYPFTVSGMSVGFT 60

Query: 60  IGASTTKLVGRALNLRGPASIEGTYSAAGAGGAIAAGAGGVQLQNANGVILQLSGPKVGA 119
           IGASTTKLVGRALNL+GP SIEG Y+A GAGGA+AAGAGGVQLQNANGVILQLSGP+VGA
Sbjct: 61  IGASTTKLVGRALNLKGPTSIEGRYTAVGAGGALAAGAGGVQLQNANGVILQLSGPRVGA 120

Query: 120 EVSAAVGGVTIRLK 133
           E+S AVGGV+IRLK
Sbjct: 121 EMSVAVGGVSIRLK 134


>ref|YP_576201.1| hypothetical protein Nham_0876 [Nitrobacter hamburgensis X14]
 gb|ABE61741.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 144

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 107/123 (86%)

Query: 11  TSSLAETGSVAVIFTKGGFIVGVGGGEGVLTLRGKRYPFTVSGMSVGFTIGASTTKLVGR 70
           T + AE G VAVIFTKGG +VGVG GEGVLTLRG  Y FTVSGMSVGFTIGASTTKLVGR
Sbjct: 22  TPARAEIGRVAVIFTKGGLVVGVGRGEGVLTLRGNHYRFTVSGMSVGFTIGASTTKLVGR 81

Query: 71  ALNLRGPASIEGTYSAAGAGGAIAAGAGGVQLQNANGVILQLSGPKVGAEVSAAVGGVTI 130
           ALNL+GP SIEG YSA GAGGA+ AGAGGVQLQNANGVILQLSGPKVGAE S A+ GV+I
Sbjct: 82  ALNLKGPTSIEGIYSAVGAGGALVAGAGGVQLQNANGVILQLSGPKVGAEASVALAGVSI 141

Query: 131 RLK 133
           RLK
Sbjct: 142 RLK 144


>ref|ZP_07026433.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI53575.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 167

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 76/124 (61%)

Query: 9   FSTSSLAETGSVAVIFTKGGFIVGVGGGEGVLTLRGKRYPFTVSGMSVGFTIGASTTKLV 68
            S+ + AETG+V   F K G+ VG   G G+L    K YPF +SG+S G T G S T LV
Sbjct: 41  LSSPACAETGAVRFKFFKAGWFVGAQTGAGILEFHEKIYPFHISGISAGLTFGGSATDLV 100

Query: 69  GRALNLRGPASIEGTYSAAGAGGAIAAGAGGVQLQNANGVILQLSGPKVGAEVSAAVGGV 128
           G A N++ P+ IEG Y+A GAG A+  G   +Q++NA GVIL L G ++G +    + G+
Sbjct: 101 GTARNMQKPSDIEGIYTALGAGVAVIRGMRAIQMRNAKGVILTLEGKQLGLQFDFDLSGM 160

Query: 129 TIRL 132
           ++ +
Sbjct: 161 SVSI 164


>ref|ZP_07028541.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI49964.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 165

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 79/133 (59%)

Query: 1   MLAIGLAGFSTSSLAETGSVAVIFTKGGFIVGVGGGEGVLTLRGKRYPFTVSGMSVGFTI 60
           MLA+  A  S+ S AETGSV   F K G+ VG   G G+L  R + YPF V G+S G T 
Sbjct: 31  MLAVLFAAISSPSYAETGSVRFKFFKAGWFVGAQTGSGILEFRDQIYPFHVGGISAGLTF 90

Query: 61  GASTTKLVGRALNLRGPASIEGTYSAAGAGGAIAAGAGGVQLQNANGVILQLSGPKVGAE 120
           G S+T  VG A N+  P  IEG Y+A GAG A+  G   +Q++NA GVIL L G ++G +
Sbjct: 91  GGSSTDFVGTARNMHQPTDIEGVYTALGAGVAVVRGVRVIQMRNAKGVILTLEGKQLGLQ 150

Query: 121 VSAAVGGVTIRLK 133
               + G+ + ++
Sbjct: 151 FDFDLSGMNVSIQ 163