BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0035.p (587 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767930.1| two-component sensor histidine kinase [Bradyrhi... 599 e-169 ref|NP_770125.1| two-component sensor histidine kinase [Bradyrhi... 399 e-109 ref|YP_576208.1| histidine kinase [Nitrobacter hamburgensis X14]... 362 1e-97 ref|YP_004551473.1| histidine kinase [Sinorhizobium meliloti AK8... 347 4e-93 gb|AEH82104.1| probabable sensor histidine kinase of two- compon... 346 6e-93 >ref|NP_767930.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC46555.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 618 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 297/584 (50%), Positives = 407/584 (69%), Gaps = 1/584 (0%) Query: 5 SMLVLDQSDRRGPFYYQVFVGLRDAVSAHGHAPTTVYTESLDLNRFGGEAYQEDFRRFLE 64 S+LVL+++D R PFY ++F G+R A +G + T +Y ESLDL RF G Y+ L+ Sbjct: 33 SVLVLEEADFRSPFYSEIFAGIRTAAKQNGKSNTVIYGESLDLARFPGPDYELSLVGHLK 92 Query: 65 AKYRDRPIGVVVTIGAAALELALRWRPQLWADTPIVFALVEEADFKRLRPPASVTGGIVA 124 KY RPI V+V+IG A+ + + + +W P+V+ V + R T Sbjct: 93 TKYAQRPIDVIVSIGVASAKFLQKRKQDIWPAAPVVYGFVPDLPETRALFLPDTTAVFAR 152 Query: 125 SKLQDAATAARAVVPELKTVVLVGADWEQQVLFRNWKDQAAAGIPGLDIVEIIGRPMPEI 184 + TAARA+VP+L VVLVG W+ +++ +WK AA +P L+++++ G + E+ Sbjct: 153 VRPTHLLTAARAIVPDLTRVVLVGEAWKNPLVYGHWKQDFAAAMPDLEVIDLSGAVLREV 212 Query: 185 VERVAALPDHSAIIYTGLYSDGKGNYYPPSDALSFVAAKANRPIVVTAETFLEPGGIGGF 244 RVA+LPD SAI+ + +YSDG+G YY P+ AL+ VA ANRPI++T++TFL G+GGF Sbjct: 213 RSRVASLPDRSAILTSAMYSDGEGTYYAPASALARVAESANRPIIITSDTFLGRSGVGGF 272 Query: 245 VIVPSLIGAEAAGRALRILDGEAPESLPPSVIDAVKPIFNWRQMQRWNVDQASLPKGSEI 304 +++P +IG EA A+RILDGEAP S+ P D V+PIF+WRQ++RWNVD+A+LP GSE+ Sbjct: 273 LLLPEIIGREAGEVAMRILDGEAPSSIAPFSGDNVRPIFDWRQLKRWNVDEANLPPGSEV 332 Query: 305 RFREPTFLEKYRWRAVALATALLVQTTLIAFLLHERHMRRSAEVEARSRLSQLAHINRQA 364 RFR+PTF E+Y W + +A +LVQ +I LL ER +R AEVEAR R+S+LAH+NR+A Sbjct: 333 RFRQPTFWEQYYWHSAIIAGVVLVQALMITILLRERRLRFMAEVEARQRMSELAHMNRRA 392 Query: 365 TAGELSSSIAHELNQPLGSILTNAESAELILASPTPDLQEVREIISDIKRDDLRASEVIR 424 TAGE+S S+AHELNQPL +IL NAE+A+ IL SP PDL E+R+I++ I+RDD RA+EVI Sbjct: 393 TAGEMSVSLAHELNQPLAAILINAETAQQILQSPAPDLGEIRDILNHIRRDDQRAAEVIG 452 Query: 425 RMRSLLKRAPFEKKEIDLNQTMREAFDFLKLQASARNVAIYLQTSPQTLRVKGDPVQLQQ 484 R+RS LKR P E+ E+DLN T+ E F FL +QA +V + +Q S +RVKGD +QLQQ Sbjct: 453 RLRSFLKRDPTERSELDLNATVGEVFRFLSVQALTHDVELVMQPSSADIRVKGDKIQLQQ 512 Query: 485 VILNLVVNSMDAMAKMP-YGRTIIGRTEVNGDASAVISICDSGPGIPQDRLNDIFDPFFT 543 ILNLVVN M+A+A +P R ++GRT + A++SI D G GI +++ +IF PFFT Sbjct: 513 AILNLVVNGMEAVAHLPDERRRVVGRTSLTEGNLALVSIADKGDGILAEKVAEIFKPFFT 572 Query: 544 TKEQGMGIGLSIARTIVLAHSGQLWAENQSGGGAVFHLSLPLAA 587 TK QGMGIGLSIA TIV AH G++WAEN GG VFH+SLPLAA Sbjct: 573 TKAQGMGIGLSIAHTIVQAHGGRIWAENVPSGGVVFHVSLPLAA 616 >ref|NP_770125.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC48750.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 649 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 232/543 (42%), Positives = 328/543 (60%), Gaps = 9/543 (1%) Query: 49 RFGGEAYQEDFRRFLEAKYRDRPIGVVVTIGAAALELALRWRPQLWADTPIVFALVEEAD 108 RF + F +L + YR P +V+++GA A ++R QL+ DTP+V VE+ Sbjct: 101 RFNSPGPEAPFVDYLRSLYRASPPDLVMSLGAPAARFVQKYREQLFPDTPLVMTAVEQ-- 158 Query: 109 FKRLRPPASVTGGIVASKLQDAATAARA----VVPELKTV-VLVGADWEQQVLFRNWKDQ 163 RL ++T V +++ TA V+PE +TV V++GA ++ K + Sbjct: 159 --RLVNRGALTQNDVVIPVRNDFTAFFGSILQVLPETRTVAVVIGASPLEKFWLDEVKRE 216 Query: 164 AAAGIPGLDIVEIIGRPMPEIVERVAALPDHSAIIYTGLYSDGKGNYYPPSDALSFVAAK 223 A +++ EI++R + LP H+ + + + DG G + AL + A Sbjct: 217 AKPFEDRFELIWYADLSFEEILKRASTLPPHTVLFWQLMSVDGVGVAHEGDLALRRLHAV 276 Query: 224 ANRPIVVTAETFLEPGGIGGFVIVPSLIGAEAAGRALRILDGEAPESLPPSVIDAVKPIF 283 AN PI E F +GG + S E ALRI GE P + I P + Sbjct: 277 ANGPIFSYQEAFFGRETVGGPMHSISESSKETVSAALRIFAGEKPGDIKIEPIGFAAPRY 336 Query: 284 NWRQMQRWNVDQASLPKGSEIRFREPTFLEKYRWRAVALATALLVQTTLIAFLLHERHMR 343 +WR+MQRW + ++ LP GSE+ FRE E+YRW+ +A A LVQ LI+ LLHER R Sbjct: 337 DWREMQRWGISESDLPTGSEVLFRERGLWERYRWQMAMIAAAFLVQAGLISGLLHERRRR 396 Query: 344 RSAEVEARSRLSQLAHINRQATAGELSSSIAHELNQPLGSILTNAESAELILASPTPDLQ 403 R A+VE+R RL++LAH++R A AGE+++SIAHELNQPLGSILTNAE+AEL+L S +P+L Sbjct: 397 RLADVESRQRLAELAHLSRYAAAGEMTTSIAHELNQPLGSILTNAETAELMLKSASPNLD 456 Query: 404 EVREIISDIKRDDLRASEVIRRMRSLLKRAPFEKKEIDLNQTMREAFDFLKLQASARNVA 463 E+R I++DI+RDD RASEVIRR+RS+LK+ PFE ++I+LN T+R+ F+ A R V Sbjct: 457 ELRAILADIRRDDQRASEVIRRLRSMLKKTPFEIRDIELNNTVRDVIGFVADVAKGRGVV 516 Query: 464 IYLQTSPQTLRVKGDPVQLQQVILNLVVNSMDAMAKMPYGRTIIGRTEVNGDASAVISIC 523 + + LRV+GDP+ LQQV+LNLVVN++DAM+++ G+ I T A A I + Sbjct: 517 LNYLPATAELRVRGDPIHLQQVVLNLVVNALDAMSEIQTGKREINVTTNVSGAWAEIRVG 576 Query: 524 DSGPGIPQDRLNDIFDPFFTTKEQGMGIGLSIARTIVLAHSGQLWAENQSGGGAVFHLSL 583 D+G GI D L IF+PFFTTK QGMG+GL+IARTIV AH G + A N GG +F + L Sbjct: 577 DTGAGIATDDLKSIFNPFFTTKPQGMGMGLAIARTIVEAHHGTISAANAPSGGTLFKIKL 636 Query: 584 PLA 586 P+A Sbjct: 637 PIA 639 >ref|YP_576208.1| histidine kinase [Nitrobacter hamburgensis X14] gb|ABE61748.1| histidine kinase [Nitrobacter hamburgensis X14] Length = 635 Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 217/548 (39%), Positives = 318/548 (58%), Gaps = 1/548 (0%) Query: 40 VYTESLDLNRFGGEAYQEDFRRFLEAKYRDRPIGVVVTIGAAALELALRWRPQLWADTPI 99 + SL R G E + F +L A Y + P +V+ IGA A R +L+ P+ Sbjct: 81 IQDHSLVSARSGDENPESPFIAYLNALYSEHPPDIVIAIGAPASNFVQHNRQRLFTQIPL 140 Query: 100 VFALVEEADFKRLRPPASVTGGIVASKLQDAATAARAVVPELKTVVLV-GADWEQQVLFR 158 + VE+ + P + T V+ + + V+P + +V+V G ++ Sbjct: 141 ILTAVEQRRIQLSNLPDNDTIIAVSHDFRLSFETILRVLPGTERIVVVNGTSPNEKFWLG 200 Query: 159 NWKDQAAAGIPGLDIVEIIGRPMPEIVERVAALPDHSAIIYTGLYSDGKGNYYPPSDALS 218 + AA+ ++ + + +++ LP ++AI + + D G Y + AL Sbjct: 201 ELRKDAASLEKKVEFIWPDDISFQDFLKKSETLPPNTAIFWHLMNVDATGISYEGNTALR 260 Query: 219 FVAAKANRPIVVTAETFLEPGGIGGFVIVPSLIGAEAAGRALRILDGEAPESLPPSVIDA 278 + +N P+ + F +GG + I A A+RIL G+ P + P+ I Sbjct: 261 QLHGVSNAPMFSYDDGFFGNEIVGGPMYSVLEISRLTAAVAVRILSGQKPRDIRPAAIKY 320 Query: 279 VKPIFNWRQMQRWNVDQASLPKGSEIRFREPTFLEKYRWRAVALATALLVQTTLIAFLLH 338 P F+WR+MQRW + +++LP GSE+ FREP YRW+ + +A +LVQ LI LLH Sbjct: 321 ANPKFDWREMQRWGISESNLPPGSEVLFREPRIWGVYRWQLLLIAAVILVQGALIGGLLH 380 Query: 339 ERHMRRSAEVEARSRLSQLAHINRQATAGELSSSIAHELNQPLGSILTNAESAELILASP 398 ER RR AE E+R RL++LAHINR + GEL++SIAHELNQPLGSILTN E+AE++L S Sbjct: 381 ERRRRRLAEAESRQRLTELAHINRNSAVGELTTSIAHELNQPLGSILTNTETAEIMLKSS 440 Query: 399 TPDLQEVREIISDIKRDDLRASEVIRRMRSLLKRAPFEKKEIDLNQTMREAFDFLKLQAS 458 +P+L E++EI++DI+RDD RASEVIRR+RS+LK+ PFE IDLN+T+R+ F+ + Sbjct: 441 SPNLDEMKEILADIRRDDQRASEVIRRLRSVLKKTPFEMTYIDLNETVRQVIGFIATVSR 500 Query: 459 ARNVAIYLQTSPQTLRVKGDPVQLQQVILNLVVNSMDAMAKMPYGRTIIGRTEVNGDASA 518 R++A+ T L V GD V LQQV LNL++N+MDA+++ + T ASA Sbjct: 501 GRDIALKYSTCSADLNVMGDVVHLQQVFLNLIINAMDAISEAEAREREVSVTTNRSGASA 560 Query: 519 VISICDSGPGIPQDRLNDIFDPFFTTKEQGMGIGLSIARTIVLAHSGQLWAENQSGGGAV 578 I I D+GPGI L +FDPFFT K QGMG+GL+I R+IV AH GQ+ A NQ+ GGA+ Sbjct: 561 EIRISDTGPGIAITDLKYVFDPFFTRKPQGMGMGLAIVRSIVEAHHGQISAANQASGGAL 620 Query: 579 FHLSLPLA 586 F + LP+A Sbjct: 621 FTIRLPIA 628 >ref|YP_004551473.1| histidine kinase [Sinorhizobium meliloti AK83] gb|AEG57350.1| histidine kinase [Sinorhizobium meliloti AK83] Length = 633 Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 212/588 (36%), Positives = 326/588 (55%), Gaps = 14/588 (2%) Query: 6 MLVLDQSDRRGPFYYQVFVGLRDAVSAHGHAPTTVYTESLDLNRFGGEAYQEDFRRFLEA 65 +L+L D R P V R + V++E LDL+RF + + + R+L Sbjct: 50 VLILYPYDERIPATNIVGEAARTRLVEATSGKVEVFSEFLDLSRFPKKGHVDRIARYLAE 109 Query: 66 KYRDRPIGVVVTIGAAALELALRWRPQLWADTPIVFALVEEADFKRLRPPASVTGGIVAS 125 KY D +V+ +G + + R + D IVF A + LR P V G + Sbjct: 110 KYSDGRPDLVIALGEESTRFIVANRNAIAPDAKIVFGGFGSATAEELRLPNDVVGALTEF 169 Query: 126 KLQDAATAARAVVPELKTVVLVGADWEQQVLFRNWKDQAAAGIPG-LDIVEIIGRPMPEI 184 +++ A + P+ + VV++ E + + G+P ++ + G + E Sbjct: 170 EIRKTVEMAIGLQPDARQVVVIAGSAEFDKAWVAAAQEDLIGLPSDIETTYLTGLSIEEF 229 Query: 185 VERVAALPDHSAIIYTGLYSDGKGNYYPPSDALSFVAAKANRPIVVTAETFLEPGGIGGF 244 VERVAALP + +I + SD G + P ++L +A A+ P+ T+L+ G +GG Sbjct: 230 VERVAALPPDTIVIVLTVLSDRTGRNFVPRNSLEKIAKAASAPVYGPYSTYLDHGAVGGN 289 Query: 245 VIVPSLIGAEAAGRALRILDGEAPESLPPSVIDAVKP---IFNWRQMQRWNVDQASLPKG 301 G AG A+ L G+A + D P + + RQ++RW + +A LP G Sbjct: 290 AATFESTGTAVAGLAIDALAGKA-------ITDITVPQSYMADSRQLRRWGLSEADLPLG 342 Query: 302 SEIRFREPTFLEKYRWRAVALATALLVQTTLIAFLLHERHMRRSAEVEARSRLSQLAHIN 361 + + F+E + ++Y +A++ + Q+ +I L+ ER R +AE +AR RL ++ H+N Sbjct: 343 TAVLFKERSLWQEYWKEIIAISAFVAAQSLVIVSLVLERRRRAAAEFQARHRLLEVIHLN 402 Query: 362 RQATAGELSSSIAHELNQPLGSILTNAESAELILASPTPDLQEVREIISDIKRDDLRASE 421 + ATAG LS+SIAHELNQPLG+I NAE+A L+L P PDL+ +++I++DI+ DD RA + Sbjct: 403 QSATAGALSASIAHELNQPLGAIRINAETAALMLERPNPDLKLIQQILADIRDDDQRAGD 462 Query: 422 VIRRMRSLL-KRAPFEKKEIDLNQTMREAFDFLKLQASARNVAIYLQTSPQTLRVKGDPV 480 +I RMR LL KR+ + +E DLN +R A L +A R+V + S Q L V+ D V Sbjct: 463 IIDRMRGLLRKRSEIDWQEFDLNDVVRSAIHILHPEAQRRDVTVSSVASAQGLPVRADRV 522 Query: 481 QLQQVILNLVVNSMDAMAKMPYG-RTIIGRTE-VNGDASAVISICDSGPGIPQDRLNDIF 538 +QQVILNL +N+MDAM + P R ++ +T V + +SI D+G GIP D+L++IF Sbjct: 523 HVQQVILNLAINAMDAMLQAPTAERNLMFQTTMVERNEKVEVSISDTGSGIPSDKLSNIF 582 Query: 539 DPFFTTKEQGMGIGLSIARTIVLAHSGQLWAENQSGGGAVFHLSLPLA 586 D F+TTK G G+GLSIAR I+ + G+LWA+N+ GGAVF LPLA Sbjct: 583 DAFYTTKPTGTGLGLSIARVIIEIYGGKLWADNRPQGGAVFRFVLPLA 630 >gb|AEH82104.1| probabable sensor histidine kinase of two- component system [Sinorhizobium meliloti SM11] Length = 633 Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 211/588 (35%), Positives = 327/588 (55%), Gaps = 14/588 (2%) Query: 6 MLVLDQSDRRGPFYYQVFVGLRDAVSAHGHAPTTVYTESLDLNRFGGEAYQEDFRRFLEA 65 +L+L D R P V R + V++E LDL+RF + + + R+L Sbjct: 50 VLILYPYDERIPATNIVGEAARTRLVEATSGKVEVFSEFLDLSRFPKKGHVDRIARYLAE 109 Query: 66 KYRDRPIGVVVTIGAAALELALRWRPQLWADTPIVFALVEEADFKRLRPPASVTGGIVAS 125 KY D +V+ +G + + R + D IVF A + LR P V G + Sbjct: 110 KYSDGRPDLVIALGEESTRFIVANRNAIAPDAKIVFGGFGSATAEELRLPNDVVGALTEF 169 Query: 126 KLQDAATAARAVVPELKTVVLVGADWEQQVLFRNWKDQAAAGIPG-LDIVEIIGRPMPEI 184 +++ A + P+ + VV++ E + + G+P ++ + G + E Sbjct: 170 EIRKTVEMAIGLQPDARQVVVIAGSAEFDKAWVAAAQEDLIGLPSYIETTYLTGLSIEEF 229 Query: 185 VERVAALPDHSAIIYTGLYSDGKGNYYPPSDALSFVAAKANRPIVVTAETFLEPGGIGGF 244 VERVAALP + ++ + SD G + P ++L +A A+ P+ T+L+ G +GG Sbjct: 230 VERVAALPPDTIVVVLTVLSDRTGRNFVPRNSLEKIAKAASAPVYGPYSTYLDHGVVGGN 289 Query: 245 VIVPSLIGAEAAGRALRILDGEAPESLPPSVIDAVKP---IFNWRQMQRWNVDQASLPKG 301 G AG A+ L G+A + D P + + RQ++RW + +A LP G Sbjct: 290 AATFESTGTAVAGLAIDALAGKA-------ITDITVPQSYMADSRQLRRWGLSEADLPLG 342 Query: 302 SEIRFREPTFLEKYRWRAVALATALLVQTTLIAFLLHERHMRRSAEVEARSRLSQLAHIN 361 + + F+E + ++Y +A++ + Q+ +I L+ ER R +AE +AR RL ++ H+N Sbjct: 343 TAVLFKERSLWQEYWKEIIAISAFVAAQSLVIVSLVLERRRRAAAEFQARHRLLEVIHLN 402 Query: 362 RQATAGELSSSIAHELNQPLGSILTNAESAELILASPTPDLQEVREIISDIKRDDLRASE 421 + ATAG LS+SIAHELNQPLG+I NAE+A L+L P PDL+ +++I++DI+ DD RA + Sbjct: 403 QSATAGALSASIAHELNQPLGAIRINAETAALMLERPNPDLKLIQQILADIRDDDQRAGD 462 Query: 422 VIRRMRSLL-KRAPFEKKEIDLNQTMREAFDFLKLQASARNVAIYLQTSPQTLRVKGDPV 480 +I RMR LL KR+ + +E DLN +R A L +A R+V + S Q L V+ D V Sbjct: 463 IIDRMRGLLRKRSEIDWQEFDLNDVVRSAIHILHPEAQRRDVTVSSVASAQGLPVRADRV 522 Query: 481 QLQQVILNLVVNSMDAMAKMPYG-RTIIGRTE-VNGDASAVISICDSGPGIPQDRLNDIF 538 +QQVILNL +N+MDAM + P R ++ +T V+ + +SI D+G GIP D+L++IF Sbjct: 523 HVQQVILNLAINAMDAMLQAPTAERNLMFQTTMVDRNEKVEVSISDTGSGIPSDKLSNIF 582 Query: 539 DPFFTTKEQGMGIGLSIARTIVLAHSGQLWAENQSGGGAVFHLSLPLA 586 D F+TTK G G+GLSIAR I+ + G+LWA+N+ GGAVF LPLA Sbjct: 583 DAFYTTKPTGTGLGLSIARVIIEIYGGKLWADNRPQGGAVFRFVLPLA 630