BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0075.0031.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_576217.1| hypothetical protein Nham_0895 [Nitrobacter ham...    70   9e-11

>ref|YP_576217.1| hypothetical protein Nham_0895 [Nitrobacter hamburgensis X14]
 gb|ABE61757.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 141

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 74/137 (54%), Gaps = 8/137 (5%)

Query: 7   LPALILLASMVGIGAGRAAPLPTNVAAMKGMVETNTALQVRWGGWGGWRGGGWGYRGWRG 66
           L AL +  +      G AAPLPT+ AAMK  ++T   LQVR+G W    GG     G   
Sbjct: 9   LAALAITTTGAFAPQGEAAPLPTSTAAMKAALDTPV-LQVRYGRW---HGGWGYRGGAGY 64

Query: 67  YGGWGGYRGWGYRGWGAAAAGAIVGGAIASSAYYGR-YPYYGGGYGYGGGDGYDYCPP-- 123
            G   G  G+G  G G  AAGAIVGGAIA SAYYG  YPYY G   YG G   DYC P  
Sbjct: 65  RGWGHGGWGYGGWGLGGVAAGAIVGGAIARSAYYGDAYPYYDGSVAYGSGYADDYCSPYG 124

Query: 124 -GGGYGYYARPRYYYGW 139
             G Y  YA   YYYGW
Sbjct: 125 YEGNYPGYAARHYYYGW 141