BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0026.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772115.1| formate dehydrogenase [Bradyrhizobium japonicum... 564 e-159 ref|ZP_07028588.1| formate dehydrogenase, gamma subunit [Afipia ... 549 e-154 ref|YP_578324.1| formate dehydrogenase, gamma subunit [Nitrobact... 513 e-143 ref|ZP_08628852.1| formate dehydrogenase-O, gamma subunit [Brady... 362 6e-98 ref|ZP_06896270.1| formate dehydrogenase [Roseomonas cervicalis ... 356 3e-96 >ref|NP_772115.1| formate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC50740.1| bll5475 [Bradyrhizobium japonicum USDA 110] Length = 337 Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust. Identities = 272/337 (80%), Positives = 309/337 (91%), Gaps = 7/337 (2%) Query: 1 MACFARFVRLVIGVAGLLLLVSAA-SPSIAQQVNPTASSVKEQQLLQELNRVQGRVSIPD 59 M+ FARF+R IG LLLL+ AA +PS+AQQ+NPTASSV E+QLLQE++R+QGRVSIPD Sbjct: 1 MSSFARFIRPTIGAWALLLLIMAAPAPSLAQQINPTASSVNERQLLQEMDRIQGRVSIPD 60 Query: 60 QRSGVLEQPAGREWREFRNVTLRWIGGIAILGMLAGLVIFYLSRGMVRLQSGRSGRTIVR 119 QRS VL QPAGREWREFRNV LRWIGG+A+LGMLA LVIFYL+RGM+RL+SGRSGRTIVR Sbjct: 61 QRSSVLIQPAGREWREFRNVVLRWIGGVAVLGMLAVLVIFYLTRGMIRLESGRSGRTIVR 120 Query: 120 FSAFERFVHWMTATCFIILAISGLNVTFGRPLLLPLIGYEAFSEWSQWAKYAHNYLSFPF 179 F+ FERFVHWMTATCF+ILAISGLN+TFGRPLLLPLIG++AFS+WSQWAK+AHNYLSFPF Sbjct: 121 FNTFERFVHWMTATCFVILAISGLNITFGRPLLLPLIGFDAFSDWSQWAKFAHNYLSFPF 180 Query: 180 TIGVVLIFLMWIGGNIPNKVDVDWIKRGGGIVGHDHPPAYRFNAGQKAVYWIVVIGGGLV 239 TIGVVLIFLMWIGGNIPNKVD++WIKRGGG++GHDHPPA RFNAGQK +YWIVVIGGGLV Sbjct: 181 TIGVVLIFLMWIGGNIPNKVDLEWIKRGGGLIGHDHPPARRFNAGQKGIYWIVVIGGGLV 240 Query: 240 AATGYALMFPFYLSGIEGMQLAQIVHSIVAVLFTAVMLAHIYIGTIGMEGAFEAMGSGTV 299 AATGY LMFPFY+SGIEGMQ+AQIVHS+VAVLF A MLAHIYIGTIGMEGAFEAMGSG V Sbjct: 241 AATGYQLMFPFYVSGIEGMQIAQIVHSVVAVLFIAAMLAHIYIGTIGMEGAFEAMGSGEV 300 Query: 300 DVNWAREHHSLWLEEENAR----DARPQP--SVTAAE 330 DVNWAREHHSLWL++E AR D++P+P + +AAE Sbjct: 301 DVNWAREHHSLWLDQELARSGPNDSQPRPRHAASAAE 337 >ref|ZP_07028588.1| formate dehydrogenase, gamma subunit [Afipia sp. 1NLS2] gb|EFI50011.1| formate dehydrogenase, gamma subunit [Afipia sp. 1NLS2] Length = 337 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 266/337 (78%), Positives = 299/337 (88%), Gaps = 7/337 (2%) Query: 1 MACFARFVRLVIGVAGLLLLVSAASPSIAQQ---VNPTASSVKEQQLLQELNRVQGRVSI 57 MA FAR++R V GVA L+++++ P+ AQQ V+PTAS+V EQQLL+EL+R+QGRVSI Sbjct: 1 MASFARYLRFVAGVAIFFLMIASSVPAAAQQPSRVDPTASAVHEQQLLKELDRIQGRVSI 60 Query: 58 PDQRSGVLEQPAGREWREFRNVTLRWIGGIAILGMLAGLVIFYLSRGMVRLQSGRSGRTI 117 PD+RSGVLEQPAGR+WR F +VTLRWIGGIAILGMLA LVIFYL RGMVR++ GRSGRTI Sbjct: 61 PDRRSGVLEQPAGRDWRYFHSVTLRWIGGIAILGMLAVLVIFYLMRGMVRIEGGRSGRTI 120 Query: 118 VRFSAFERFVHWMTATCFIILAISGLNVTFGRPLLLPLIGYEAFSEWSQWAKYAHNYLSF 177 VRFS FERFVHWMTATCFIILAISGLN+TFGRPLLLP+IG+EAFS WSQWAKYAHNYLSF Sbjct: 121 VRFSGFERFVHWMTATCFIILAISGLNITFGRPLLLPVIGHEAFSAWSQWAKYAHNYLSF 180 Query: 178 PFTIGVVLIFLMWIGGNIPNKVDVDWIKRGGGIVGHDHPPAYRFNAGQKAVYWIVVIGGG 237 PFTIGV+LIFLMWIGGNIPNKVD +W+K GGGIVGH HPPAYRFNAGQKA+YWIVV+GGG Sbjct: 181 PFTIGVILIFLMWIGGNIPNKVDAEWLKEGGGIVGHSHPPAYRFNAGQKAIYWIVVLGGG 240 Query: 238 LVAATGYALMFPFYLSGIEGMQLAQIVHSIVAVLFTAVMLAHIYIGTIGMEGAFEAMGSG 297 VA TGY LMFPFY++GIEGMQLAQIVH++V VLF AVMLAHIYIGTIGMEGAFEAMG G Sbjct: 241 AVAVTGYQLMFPFYVTGIEGMQLAQIVHAVVGVLFVAVMLAHIYIGTIGMEGAFEAMGEG 300 Query: 298 TVDVNWAREHHSLWLEEENAR----DARPQPSVTAAE 330 TVD+NWA+EHHSLWLEEE+AR A PS T AE Sbjct: 301 TVDLNWAKEHHSLWLEEESARRGVNTAHHHPSSTPAE 337 >ref|YP_578324.1| formate dehydrogenase, gamma subunit [Nitrobacter hamburgensis X14] gb|ABE63864.1| formate dehydrogenase gamma subunit [Nitrobacter hamburgensis X14] Length = 336 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 266/336 (79%), Positives = 296/336 (88%), Gaps = 6/336 (1%) Query: 1 MACFARFVRLVIGVAGL--LLLVSAASPSIAQQVNPTASSVKEQQLLQELNRVQGRVSIP 58 MA FAR+VR V L ++LV AS +V+P AS+V EQ+L QE +R+ GRVSIP Sbjct: 1 MASFARYVRFAACVWTLFFIVLVVPASAQQPSRVDPNASAVTEQKLFQEQDRIHGRVSIP 60 Query: 59 DQRSGVLEQPAGREWREFRNVTLRWIGGIAILGMLAGLVIFYLSRGMVRLQSGRSGRTIV 118 DQRSGVLEQPAGR+WR FR+VTLRWIGGIAILGMLA L IFYL+RGMVR+QSGRSGRTIV Sbjct: 61 DQRSGVLEQPAGRDWRHFRDVTLRWIGGIAILGMLAILSIFYLARGMVRIQSGRSGRTIV 120 Query: 119 RFSAFERFVHWMTATCFIILAISGLNVTFGRPLLLPLIGYEAFSEWSQWAKYAHNYLSFP 178 RFSAFERFVHWMTATCFIILAISGLN+TFGRPLLLPLIG+ AFSEWSQWAKYAHNYLSFP Sbjct: 121 RFSAFERFVHWMTATCFIILAISGLNITFGRPLLLPLIGFAAFSEWSQWAKYAHNYLSFP 180 Query: 179 FTIGVVLIFLMWIGGNIPNKVDVDWIKRGGGIVGHDHPPAYRFNAGQKAVYWIVVIGGGL 238 FTIGV+LIFLMWI GNIPNKVDV+W+KRGGG+VGHDHPPAYRFNAGQKAVYWIVV+GGG Sbjct: 181 FTIGVILIFLMWIAGNIPNKVDVEWLKRGGGMVGHDHPPAYRFNAGQKAVYWIVVVGGGA 240 Query: 239 VAATGYALMFPFYLSGIEGMQLAQIVHSIVAVLFTAVMLAHIYIGTIGMEGAFEAMGSGT 298 VAATGY LMFPFYL+GIEGMQLA +VH++V+VLF AVMLAHIYIGTIGMEGAFEAMG GT Sbjct: 241 VAATGYQLMFPFYLTGIEGMQLAHVVHAVVSVLFVAVMLAHIYIGTIGMEGAFEAMGEGT 300 Query: 299 VDVNWAREHHSLWLEEENAR----DARPQPSVTAAE 330 VD+NWAREHHSLWL+E+NAR + +PS T AE Sbjct: 301 VDLNWAREHHSLWLDEQNARTGVNETHRRPSATPAE 336 >ref|ZP_08628852.1| formate dehydrogenase-O, gamma subunit [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08211.1| formate dehydrogenase-O, gamma subunit [Bradyrhizobiaceae bacterium SG-6C] Length = 336 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 170/315 (53%), Positives = 238/315 (75%), Gaps = 5/315 (1%) Query: 14 VAGLLLLVSAASPSIAQQV-NPTASSVKEQQLLQEL---NRVQGRVSIPDQRSGVLEQPA 69 A ++LL + + P+ AQ V PTA +V E QLL+ L +++ GR++IPD + L QPA Sbjct: 12 CAAIVLLFAYSQPAAAQLVFKPTADAVHEDQLLKTLKEGDKITGRITIPDPMARNLIQPA 71 Query: 70 GREWREFRNVTLRWIGGIAILGMLAGLVIFYLSRGMVRLQSGRSGRTIVRFSAFERFVHW 129 G++WR+F+ L IGG+AI+GMLA L IF RG VR++ G SG I+RF++FERF HW Sbjct: 72 GKDWRDFQRHKLPIIGGVAIIGMLALLAIFLAVRGRVRVEHGLSGIKILRFASFERFTHW 131 Query: 130 MTATCFIILAISGLNVTFGRPLLLPLIGYEAFSEWSQWAKYAHNYLSFPFTIGVVLIFLM 189 +TATCFIILA+SGLN++FGR L+LPL G +AFS + W K AHNYL+FPF +G+ ++F++ Sbjct: 132 LTATCFIILALSGLNISFGRVLILPLFGPDAFSTLTAWGKIAHNYLAFPFMLGIAIMFVI 191 Query: 190 WIGGNIPNKVDVDWIKRGGGIVGH-DHPPAYRFNAGQKAVYWIVVIGGGLVAATGYALMF 248 WI NIP K+D+ W++ GGGI+ +HPPA RFNAGQK ++W+VV+GG L++ +G+ L+F Sbjct: 192 WIKDNIPGKLDLVWLREGGGILKSGEHPPAKRFNAGQKGIFWMVVVGGALMSVSGWFLLF 251 Query: 249 PFYLSGIEGMQLAQIVHSIVAVLFTAVMLAHIYIGTIGMEGAFEAMGSGTVDVNWAREHH 308 P+ + + +Q +VH+++A+LF A +LAHIYIGT+GMEGAFEAMGSG VD+NWA+EHH Sbjct: 252 PYIPANVTALQFWTVVHAVIAMLFIAGILAHIYIGTVGMEGAFEAMGSGEVDLNWAKEHH 311 Query: 309 SLWLEEENARDARPQ 323 SLW+EEE A+ P Sbjct: 312 SLWVEEEQAKGHVPD 326 >ref|ZP_06896270.1| formate dehydrogenase [Roseomonas cervicalis ATCC 49957] gb|EFH12017.1| formate dehydrogenase [Roseomonas cervicalis ATCC 49957] Length = 413 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 175/286 (61%), Positives = 224/286 (78%), Gaps = 2/286 (0%) Query: 38 SVKEQQLLQELN--RVQGRVSIPDQRSGVLEQPAGREWREFRNVTLRWIGGIAILGMLAG 95 S +E +L + L R+ GRVSIPD ++G L QPAGREWR+F N TL WIG +AILGMLA Sbjct: 115 SAEELELQRALTGGRIAGRVSIPDAKAGDLIQPAGREWRDFHNRTLVWIGAVAILGMLAV 174 Query: 96 LVIFYLSRGMVRLQSGRSGRTIVRFSAFERFVHWMTATCFIILAISGLNVTFGRPLLLPL 155 LV+FYL RG +RLQ G SGRT++RF+ ER HWMTA FI+L +SGLN+TFGR LLLPL Sbjct: 175 LVLFYLVRGKIRLQHGWSGRTMLRFTFVERMAHWMTAGTFIVLGLSGLNLTFGRHLLLPL 234 Query: 156 IGYEAFSEWSQWAKYAHNYLSFPFTIGVVLIFLMWIGGNIPNKVDVDWIKRGGGIVGHDH 215 IG EAF+ S W K AHN+L+FPFT+G+VL+ L+W NIPN++D+ W+ +GGG++G+ H Sbjct: 235 IGPEAFTAVSMWGKVAHNFLAFPFTLGLVLLLLLWAKDNIPNRLDLQWVLQGGGLIGNKH 294 Query: 216 PPAYRFNAGQKAVYWIVVIGGGLVAATGYALMFPFYLSGIEGMQLAQIVHSIVAVLFTAV 275 P A RFNAGQK+V+W+ V+GGG+VAA+GY L+FPF ++ I G QL+ IVH ++A+L A Sbjct: 295 PQAGRFNAGQKSVFWMTVLGGGVVAASGYVLVFPFTVTDIAGQQLSHIVHGVLALLMFAA 354 Query: 276 MLAHIYIGTIGMEGAFEAMGSGTVDVNWAREHHSLWLEEENARDAR 321 ML HIYIGTIGMEGAF+AMGSG VD NWAREHH LW+++E + R Sbjct: 355 MLGHIYIGTIGMEGAFDAMGSGQVDYNWAREHHGLWVDQELEKAHR 400