BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0012.p (434 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004555467.1| (R)-benzylsuccinyl-CoA dehydrogenase [Sphing... 699 0.0 ref|NP_770495.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicu... 637 0.0 ref|YP_004109594.1| acyl-CoA dehydrogenase domain-containing pro... 633 e-179 ref|YP_002297254.1| acyl-CoA dehydrogenase, putative [Rhodospiri... 573 e-161 ref|YP_004127516.1| acyl-CoA dehydrogenase domain-containing pro... 537 e-150 >ref|YP_004555467.1| (R)-benzylsuccinyl-CoA dehydrogenase [Sphingobium chlorophenolicum L-1] gb|AEG50961.1| (R)-benzylsuccinyl-CoA dehydrogenase [Sphingobium chlorophenolicum L-1] Length = 437 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/427 (78%), Positives = 378/427 (88%), Gaps = 2/427 (0%) Query: 6 SERSQQLAARLQRFMMEHIYPNERRYYQEAERLGPWAVHPVVEELKPLAQQAGLWNLFLP 65 S R LA +L+ FM EHIYPNERRYYQEAERLGPW+V+PVVEELKP+A+ AGLWNLFLP Sbjct: 6 SSRGSALAEQLKSFMAEHIYPNERRYYQEAERLGPWSVYPVVEELKPIARAAGLWNLFLP 65 Query: 66 AHE--DGLTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMETILRYGTEAQKDRWLKPLL 123 A E +GL+N++YAPLCEIMGRS LAPEV NC+APDTGNMETILRYGT QK++WLKPLL Sbjct: 66 ASEAAEGLSNVDYAPLCEIMGRSMLAPEVFNCNAPDTGNMETILRYGTAEQKEKWLKPLL 125 Query: 124 AGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRCKIIIFMGQT 183 AGEIRS FAMTEP+VASSDATN+ASSIVRDG DYVINGRKWYTTGATDPRC I+IFMGQT Sbjct: 126 AGEIRSCFAMTEPEVASSDATNIASSIVRDGGDYVINGRKWYTTGATDPRCGIMIFMGQT 185 Query: 184 DPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRASEVIFTNVRVPAANMLLGE 243 DP+ D H+RQSMILVP +T GV+VVR+LP+ GFYGVPDR++EV+F NVRVPA N+LLGE Sbjct: 186 DPEGDDPHRRQSMILVPMDTPGVNVVRALPIFGFYGVPDRSAEVLFDNVRVPAENILLGE 245 Query: 244 GRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQTVTLERVAEA 303 GRGFEIAQGRLGPGRIHHCMRLIG+SERVLERMCRRA R FG+PLA+QTVTLER+AE+ Sbjct: 246 GRGFEIAQGRLGPGRIHHCMRLIGMSERVLERMCRRAELRHPFGRPLADQTVTLERIAES 305 Query: 304 RMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQAFGGGGTNND 363 R+ I+QARLLT++AAYMMDTVGNKAARQEIAMIKV APNMAQTIVDWAIQ FGGGGT++D Sbjct: 306 RIMIEQARLLTMKAAYMMDTVGNKAARQEIAMIKVAAPNMAQTIVDWAIQMFGGGGTSSD 365 Query: 364 HFLSAALATTRLLRLADGPDEVHRNQIGKLELRRWLNVDPARTGGGADPLSPDESESWSE 423 H+L+AA RLLRLADGPDEVHRNQI +LE+RR VDPA TGGGAD LS DE+ + Sbjct: 366 HYLAAAFTMARLLRLADGPDEVHRNQIARLEMRRHRGVDPALTGGGADVLSRDEAGRMAA 425 Query: 424 GGLWPRP 430 G+WPRP Sbjct: 426 EGMWPRP 432 >ref|NP_770495.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC49120.1| bll3855 [Bradyrhizobium japonicum USDA 110] Length = 403 Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/397 (76%), Positives = 338/397 (85%), Gaps = 2/397 (0%) Query: 6 SERSQQLAARLQRFMMEHIYPNERRYYQEAERLGPWAVHPVVEELKPLAQQAGLWNLFLP 65 S + +L +L+ FM HIYPNE R+Y+EAE LGPW V+PVVEELKPLA+ GLWNLFLP Sbjct: 6 SPKVVELKRKLESFMDRHIYPNEERFYREAEELGPWKVYPVVEELKPLARAEGLWNLFLP 65 Query: 66 --AHEDGLTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMETILRYGTEAQKDRWLKPLL 123 +H GLTNLEYAPLCE+MGRSHLAPEV NCSAPDTGNME + RYGT+ K+RWLKPLL Sbjct: 66 ESSHGAGLTNLEYAPLCEVMGRSHLAPEVFNCSAPDTGNMEVLERYGTKEDKERWLKPLL 125 Query: 124 AGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRCKIIIFMGQT 183 AG+IRS FAMTEP VASSDATN+ SSIVRDGD YVINGRKWYTT ATDPRCKI IFMG+T Sbjct: 126 AGDIRSCFAMTEPAVASSDATNIESSIVRDGDHYVINGRKWYTTNATDPRCKICIFMGKT 185 Query: 184 DPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRASEVIFTNVRVPAANMLLGE 243 DPDNPDRHK+QSMILVP +T G+ V R LPV GFYGVPDRASEV+FTNVRVP NMLLGE Sbjct: 186 DPDNPDRHKQQSMILVPMDTSGIEVKRPLPVFGFYGVPDRASEVVFTNVRVPKENMLLGE 245 Query: 244 GRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQTVTLERVAEA 303 GRGFEIAQGRLGPGRIHHCMRLIGL+ER LE+MCRR RVAFGKP++EQTVT ER+AEA Sbjct: 246 GRGFEIAQGRLGPGRIHHCMRLIGLAERTLEKMCRRVRSRVAFGKPVSEQTVTQERIAEA 305 Query: 304 RMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQAFGGGGTNND 363 R+ I+QARLLTL AAY MDTVGNK A+ EIAMIKV PNMA ++DWAIQA GGGGT+ND Sbjct: 306 RIMIEQARLLTLNAAYAMDTVGNKVAKSEIAMIKVAVPNMACQVIDWAIQAHGGGGTSND 365 Query: 364 HFLSAALATTRLLRLADGPDEVHRNQIGKLELRRWLN 400 L+ A AT RLLRLADGPDEVHRNQI + EL+++ N Sbjct: 366 FGLTQAYATARLLRLADGPDEVHRNQIARFELKKYSN 402 >ref|YP_004109594.1| acyl-CoA dehydrogenase domain-containing protein [Rhodopseudomonas palustris DX-1] gb|ADU44861.1| acyl-CoA dehydrogenase domain protein [Rhodopseudomonas palustris DX-1] Length = 402 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 301/398 (75%), Positives = 342/398 (85%), Gaps = 2/398 (0%) Query: 5 QSERSQQLAARLQRFMMEHIYPNERRYYQEAERLGPWAVHPVVEELKPLAQQAGLWNLFL 64 +S++++ L RL+ FM +HIY +E R+Y+EAE LGPW V+PVVEELKP A+ GLWNLFL Sbjct: 5 ESDKTKALKRRLEAFMDKHIYAHEERFYREAEELGPWKVYPVVEELKPKARAEGLWNLFL 64 Query: 65 PA--HEDGLTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMETILRYGTEAQKDRWLKPL 122 P H GLTNLEYAPLCEIMGRSHLAPEV NCSAPDTGNME + RYGT ++RWLKPL Sbjct: 65 PESEHGSGLTNLEYAPLCEIMGRSHLAPEVFNCSAPDTGNMEVLARYGTAEHQERWLKPL 124 Query: 123 LAGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRCKIIIFMGQ 182 LAGEIRS FAMTEP VASSDATN+ SSIVRDGD YVINGRKWYTT ATDPRC+I IFMG+ Sbjct: 125 LAGEIRSCFAMTEPAVASSDATNIESSIVRDGDSYVINGRKWYTTNATDPRCRICIFMGK 184 Query: 183 TDPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRASEVIFTNVRVPAANMLLG 242 TDP NPDRH++QSMILVP +T GV V+R +PV GFYGVPDRASEV+F +VRVPAANMLLG Sbjct: 185 TDPTNPDRHRQQSMILVPMDTPGVEVLRPIPVFGFYGVPDRASEVVFKDVRVPAANMLLG 244 Query: 243 EGRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQTVTLERVAE 302 EGRGFEIAQGRLGPGRIHHCMRLIGL+ER LE+MCRRA RVAFGKP++EQTVT ER+AE Sbjct: 245 EGRGFEIAQGRLGPGRIHHCMRLIGLAERTLEKMCRRAASRVAFGKPVSEQTVTQERIAE 304 Query: 303 ARMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQAFGGGGTNN 362 AR+ I+QARLLTL AA+ MDTVGNK A+ EIAMIKV PN+A I+DWAIQA GGGGT+N Sbjct: 305 ARIMIEQARLLTLNAAHAMDTVGNKVAKAEIAMIKVAVPNIACQIIDWAIQAHGGGGTSN 364 Query: 363 DHFLSAALATTRLLRLADGPDEVHRNQIGKLELRRWLN 400 D L+AA AT RLLRLADGPDEVHRNQI +LELR+ +N Sbjct: 365 DFGLAAAYATARLLRLADGPDEVHRNQIARLELRKHVN 402 >ref|YP_002297254.1| acyl-CoA dehydrogenase, putative [Rhodospirillum centenum SW] gb|ACI98441.1| acyl-CoA dehydrogenase, putative [Rhodospirillum centenum SW] Length = 418 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 278/413 (67%), Positives = 326/413 (78%), Gaps = 3/413 (0%) Query: 1 VDITQSERSQQLAARLQRFMMEHIYPNERRYYQEAERLGP-WAVHPVVEELKPLAQQAGL 59 +D S++++ L RL RFM EH+YPNE + + + G W P++EELK A+ GL Sbjct: 1 MDFEYSDKTKALQERLSRFMAEHLYPNEATLFAQVGQSGDRWQPVPMLEELKAKAKAEGL 60 Query: 60 WNLFLPAHE--DGLTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMETILRYGTEAQKDR 117 WNLFLP E GLTNLEYAPLCEIMGRSH APEV NCSAPDTGNME ++RYGT QK R Sbjct: 61 WNLFLPESELGAGLTNLEYAPLCEIMGRSHWAPEVFNCSAPDTGNMEVLVRYGTPEQKKR 120 Query: 118 WLKPLLAGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRCKII 177 WL+PLL G IRS FAMTEP+VASSDATN+ + I RDGDDYVINGRKW+T+GA DPRCK++ Sbjct: 121 WLEPLLDGSIRSGFAMTEPEVASSDATNIRTEIRRDGDDYVINGRKWWTSGAGDPRCKVL 180 Query: 178 IFMGQTDPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRASEVIFTNVRVPAA 237 I MG++DPD+PDRH++QSMILVP +T G+ V R LPV G+ P +E++F +VRVPA+ Sbjct: 181 IVMGKSDPDSPDRHRQQSMILVPMDTPGIDVRRMLPVFGYDDAPHGHAEIVFRDVRVPAS 240 Query: 238 NMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQTVTL 297 NMLLGEGRGFEIAQGRLGPGRIHHCMRLIGL+ER LERMCRR L R AFGK LA QTV Sbjct: 241 NMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALERMCRRTLNRNAFGKALAAQTVWQ 300 Query: 298 ERVAEARMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQAFGG 357 ER+AE+R+ IDQARLLTL+AAYMMDTVGNK AR EIAMIKVVAPNMA ++DWAIQ+FGG Sbjct: 301 ERIAESRLLIDQARLLTLKAAYMMDTVGNKVARAEIAMIKVVAPNMACKVIDWAIQSFGG 360 Query: 358 GGTNNDHFLSAALATTRLLRLADGPDEVHRNQIGKLELRRWLNVDPARTGGGA 410 G DH L+ A A R LRLADGPDEVHRNQI KLEL ++ + + TGG A Sbjct: 361 AGVTEDHGLAYAYAGARTLRLADGPDEVHRNQIAKLELSKYSTQEGSHTGGDA 413 >ref|YP_004127516.1| acyl-CoA dehydrogenase domain-containing protein [Alicycliphilus denitrificans BC] ref|YP_004387458.1| Isovaleryl-CoA dehydrogenase [Alicycliphilus denitrificans K601] gb|ADV00629.1| acyl-CoA dehydrogenase domain-containing protein [Alicycliphilus denitrificans BC] gb|AEB83942.1| Isovaleryl-CoA dehydrogenase [Alicycliphilus denitrificans K601] Length = 408 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 264/406 (65%), Positives = 315/406 (77%), Gaps = 6/406 (1%) Query: 1 VDITQSERSQQLAARLQRFMMEHIYPNERRYYQEAE---RLG-PWAVHPVVEELKPLAQQ 56 +D + S + L RL FM EH+YP E Y+ E + + G PW V+EELK A+ Sbjct: 1 MDFSYSPKVVDLQKRLTAFMDEHVYPAESAYHHEVDANRKAGNPWQPTKVMEELKAKARA 60 Query: 57 AGLWNLFLP--AHEDGLTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMETILRYGTEAQ 114 AGLWNLFLP + GLTNLEYAPLCEIMGRSH+APE NCSAPDTGNMET++RYG+E Q Sbjct: 61 AGLWNLFLPESKYGAGLTNLEYAPLCEIMGRSHVAPEAFNCSAPDTGNMETLVRYGSEEQ 120 Query: 115 KDRWLKPLLAGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRC 174 + +WL PLL G IRS+FAMTEP VASSDATN+ + I R GD+YVINGRKW+T+GA DPRC Sbjct: 121 QRQWLLPLLEGRIRSAFAMTEPAVASSDATNIEARIERVGDEYVINGRKWWTSGAPDPRC 180 Query: 175 KIIIFMGQTDPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRASEVIFTNVRV 234 +I+IFMG+TDPD+P RH++QSMILVP +T GV + R+LPV G+ P EV F NVRV Sbjct: 181 EILIFMGKTDPDHPSRHRQQSMILVPMKTPGVTMERALPVFGYDHAPHGHGEVSFDNVRV 240 Query: 235 PAANMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQT 294 P +N+LLGEGRGFEIAQGRLGPGRIHHCMRLIG++ER LE MCRRAL RVAF +P+A+Q Sbjct: 241 PVSNVLLGEGRGFEIAQGRLGPGRIHHCMRLIGVAERALELMCRRALGRVAFHRPVADQG 300 Query: 295 VTLERVAEARMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQA 354 VT ER+A AR+ IDQAR L L AAYMMDTVGNK A++EIAMIKV AP MA ++DWA+Q Sbjct: 301 VTRERIANARILIDQARFLVLNAAYMMDTVGNKVAQKEIAMIKVAAPGMACQVIDWAMQV 360 Query: 355 FGGGGTNNDHFLSAALATTRLLRLADGPDEVHRNQIGKLELRRWLN 400 GGGG +D L+AA A R LR ADGPDEVHRNQIGK+EL R++ Sbjct: 361 HGGGGVCDDFPLAAAYAQARTLRFADGPDEVHRNQIGKMELSRYMT 406