BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0074.0007.p (462 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synth... 730 0.0 ref|YP_001207548.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate sy... 716 0.0 ref|YP_001242006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate sy... 696 0.0 ref|YP_485611.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synth... 667 0.0 ref|ZP_08630964.1| UDP-N-acetylmuramoylalanine--D-glutamate liga... 660 0.0 >ref|NP_773244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bradyrhizobium japonicum USDA 110] sp|Q89FU5.1|MURD_BRAJA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase dbj|BAC51869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium japonicum USDA 110] Length = 466 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/420 (87%), Positives = 392/420 (93%) Query: 1 MIPVTSFSGKTVAVFGLGGSGLASCHALKAGGAEVIAADDNADNVAKAAQAGFTTADLRT 60 MIPVTSF+GKTVAVFGLGGSGLASCHALKAGGAEVIAADDNA+NVAKAAQAGF TADLR Sbjct: 1 MIPVTSFAGKTVAVFGLGGSGLASCHALKAGGAEVIAADDNAENVAKAAQAGFITADLRD 60 Query: 61 VSWTNFAALILTPGAPLTHPAPHWSVLKAREAGVEVIGDVELFCRERRRHAPNAPFVAIT 120 VSW FAAL+L PG PLTHP PHWSVLKAREAGVEVIGD+ELFCRERRRHAP+APFVAIT Sbjct: 61 VSWAGFAALVLAPGVPLTHPVPHWSVLKAREAGVEVIGDIELFCRERRRHAPDAPFVAIT 120 Query: 121 GTNGKSTTTALIAHLMKVAGYDTQMGGNIGTAILSLEPPRMGRVHVIEMSSYQIDLAPSL 180 GTNGKSTTTALIAHL KVAGYDTQMGGNIGTAILSLEPPR GRVHVIEMSSYQIDL PSL Sbjct: 121 GTNGKSTTTALIAHLTKVAGYDTQMGGNIGTAILSLEPPRTGRVHVIEMSSYQIDLTPSL 180 Query: 181 DPSVGILINISEDHIDRHGTLEHYAAVKERLVAGVQQGGTSIVGVDDGWSRNIADRLDRA 240 DPSVGIL+N+SEDHIDRHGT+ HYAAVKERLVAGVQ GGTSIVGVDDG+ R+IADRLDRA Sbjct: 181 DPSVGILLNVSEDHIDRHGTIAHYAAVKERLVAGVQAGGTSIVGVDDGYCRDIADRLDRA 240 Query: 241 GKRVVRISVRNPLPDGLYVEHETILRASGAARSEIARLGGIGSLRGLHNAQNAACASACA 300 GK VVRISV+NPL G++VEH TI+R +G ARSE+A+LGGIGSLRGLHNAQNAACA+A A Sbjct: 241 GKNVVRISVKNPLASGIHVEHGTIVRTAGGARSEVAKLGGIGSLRGLHNAQNAACAAAAA 300 Query: 301 LAMGIATDVLQNGLRSFPGLAHRMEQVGRRGNVLFVNDSKGTNADAAAHALSSFADIYWI 360 LAMGI+ DVLQ+GLRSFPGLAHRMEQVGRRGNVLFVNDSKGTNADA AHALSSFADI+WI Sbjct: 301 LAMGISQDVLQDGLRSFPGLAHRMEQVGRRGNVLFVNDSKGTNADATAHALSSFADIFWI 360 Query: 361 AGGKPKAGGITSLTEYFPRIRKAYLIGEAAAEFSGTLGERVAHEMSGTLDVAIASAARDA 420 AGGKPKAGGITSLT +FPRIRKAYLIGEAA EFSGTLG +VAHE+S TLDVA+ AARDA Sbjct: 361 AGGKPKAGGITSLTGFFPRIRKAYLIGEAAQEFSGTLGTQVAHEISQTLDVAVEHAARDA 420 >ref|YP_001207548.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bradyrhizobium sp. ORS 278] emb|CAL79331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bradyrhizobium sp. ORS 278] Length = 466 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/420 (84%), Positives = 390/420 (92%) Query: 1 MIPVTSFSGKTVAVFGLGGSGLASCHALKAGGAEVIAADDNADNVAKAAQAGFTTADLRT 60 MIPVTSF+GKTVAVFGLGGSGLASCHAL+AGGAEVIAADD AD + +AA+AGF TADLRT Sbjct: 1 MIPVTSFAGKTVAVFGLGGSGLASCHALRAGGAEVIAADDGADRMTEAAKAGFITADLRT 60 Query: 61 VSWTNFAALILTPGAPLTHPAPHWSVLKAREAGVEVIGDVELFCRERRRHAPNAPFVAIT 120 VSW+NFAAL+L PG PLTHP PHWSVL+AREAGVEVIGD+ELFCRERRRHAP+APF+AIT Sbjct: 61 VSWSNFAALVLAPGVPLTHPVPHWSVLRAREAGVEVIGDIELFCRERRRHAPDAPFIAIT 120 Query: 121 GTNGKSTTTALIAHLMKVAGYDTQMGGNIGTAILSLEPPRMGRVHVIEMSSYQIDLAPSL 180 GTNGKSTTTALIAHLM+VAGYDTQMGGNIGTAILSLEPPRMGRVHVIEMSSYQIDL PSL Sbjct: 121 GTNGKSTTTALIAHLMRVAGYDTQMGGNIGTAILSLEPPRMGRVHVIEMSSYQIDLTPSL 180 Query: 181 DPSVGILINISEDHIDRHGTLEHYAAVKERLVAGVQQGGTSIVGVDDGWSRNIADRLDRA 240 DPS+GIL+N+SEDHIDRHGT+E+YAAVKERLVAGV+ GT+IVGVDDG+ R IADRLD+A Sbjct: 181 DPSIGILLNVSEDHIDRHGTIENYAAVKERLVAGVKPQGTAIVGVDDGFCRAIADRLDQA 240 Query: 241 GKRVVRISVRNPLPDGLYVEHETILRASGAARSEIARLGGIGSLRGLHNAQNAACASACA 300 GKRVVRISV+NPL DGLY EHETI+R+SG ARSE+ARLGGIGSLRG HNAQNAACA+A A Sbjct: 241 GKRVVRISVKNPLADGLYTEHETIVRSSGGARSEVARLGGIGSLRGQHNAQNAACAAAAA 300 Query: 301 LAMGIATDVLQNGLRSFPGLAHRMEQVGRRGNVLFVNDSKGTNADAAAHALSSFADIYWI 360 LA+G+ DVLQ GLRSFPGLAHRMEQVGR GNVLFVNDSKGTNADA AHALSSFADI+WI Sbjct: 301 LAIGVREDVLQQGLRSFPGLAHRMEQVGRLGNVLFVNDSKGTNADATAHALSSFADIFWI 360 Query: 361 AGGKPKAGGITSLTEYFPRIRKAYLIGEAAAEFSGTLGERVAHEMSGTLDVAIASAARDA 420 AGGKPKAGGITSL +FPRIRKAYLIGEAA EF+GTLGE+V H MSGTL+VA+ AA DA Sbjct: 361 AGGKPKAGGITSLAGFFPRIRKAYLIGEAAKEFAGTLGEKVPHAMSGTLEVAVEQAAADA 420 >ref|YP_001242006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bradyrhizobium sp. BTAi1] gb|ABQ38100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium sp. BTAi1] Length = 466 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/409 (83%), Positives = 381/409 (93%) Query: 1 MIPVTSFSGKTVAVFGLGGSGLASCHALKAGGAEVIAADDNADNVAKAAQAGFTTADLRT 60 MIPVTSF+GKTVAVFGLGGSGLASCHAL+AGGA+V+A DD A+ +A+AA+AGF TADLRT Sbjct: 1 MIPVTSFAGKTVAVFGLGGSGLASCHALRAGGADVVAGDDGAERLAEAAKAGFVTADLRT 60 Query: 61 VSWTNFAALILTPGAPLTHPAPHWSVLKAREAGVEVIGDVELFCRERRRHAPNAPFVAIT 120 VSW++FAAL+L PG PLTHP PHWSVLKAREAG+EVIGD+ELFCRERRRHAP+APFVAIT Sbjct: 61 VSWSDFAALVLAPGVPLTHPVPHWSVLKAREAGIEVIGDIELFCRERRRHAPDAPFVAIT 120 Query: 121 GTNGKSTTTALIAHLMKVAGYDTQMGGNIGTAILSLEPPRMGRVHVIEMSSYQIDLAPSL 180 GTNGKSTTTALIAHLM+ AGYDTQ+GGNIGTAILSLEPPRMGRVHVIEMSSYQIDL PSL Sbjct: 121 GTNGKSTTTALIAHLMQTAGYDTQLGGNIGTAILSLEPPRMGRVHVIEMSSYQIDLTPSL 180 Query: 181 DPSVGILINISEDHIDRHGTLEHYAAVKERLVAGVQQGGTSIVGVDDGWSRNIADRLDRA 240 DP+VGIL+N+SEDHIDRHGT+E+YAAVKERLVAGV+ GT+I+GVDDG+SR IADRLD+A Sbjct: 181 DPTVGILLNVSEDHIDRHGTIENYAAVKERLVAGVKPEGTAIIGVDDGFSRAIADRLDQA 240 Query: 241 GKRVVRISVRNPLPDGLYVEHETILRASGAARSEIARLGGIGSLRGLHNAQNAACASACA 300 GKRVVR+SV+NPL DGLYVEHETILR++ ARSE+ARLGGIGSLRG HNAQNAACA+A Sbjct: 241 GKRVVRVSVKNPLADGLYVEHETILRSASGARSEVARLGGIGSLRGQHNAQNAACAAAAT 300 Query: 301 LAMGIATDVLQNGLRSFPGLAHRMEQVGRRGNVLFVNDSKGTNADAAAHALSSFADIYWI 360 LA+G+ DVLQ GLRSFPGL HRMEQVGRRG+VLFVNDSKGTNADA AHALSSFADI+WI Sbjct: 301 LAIGVKQDVLQQGLRSFPGLVHRMEQVGRRGHVLFVNDSKGTNADATAHALSSFADIFWI 360 Query: 361 AGGKPKAGGITSLTEYFPRIRKAYLIGEAAAEFSGTLGERVAHEMSGTL 409 AGGKPKAGGITSL +FPRIRKAYLIGEAAAEF+GTLG +V H MSGTL Sbjct: 361 AGGKPKAGGITSLEGFFPRIRKAYLIGEAAAEFAGTLGNKVPHAMSGTL 409 >ref|YP_485611.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodopseudomonas palustris HaA2] sp|Q2IYL0.1|MURD_RHOP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gb|ABD06700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas palustris HaA2] Length = 466 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/410 (80%), Positives = 363/410 (88%) Query: 1 MIPVTSFSGKTVAVFGLGGSGLASCHALKAGGAEVIAADDNADNVAKAAQAGFTTADLRT 60 MIPVTSF+G++VAVFGLGGSGLASCHAL+AGGAEVIA DDN D + +AAQA F TADLR Sbjct: 1 MIPVTSFAGQSVAVFGLGGSGLASCHALRAGGAEVIACDDNLDRMVEAAQANFITADLRN 60 Query: 61 VSWTNFAALILTPGAPLTHPAPHWSVLKAREAGVEVIGDVELFCRERRRHAPNAPFVAIT 120 + W NFAAL+LTPG PLTHP PHWSVLKAREAGVEVIGDVELFCRERR HAPNAPFVAIT Sbjct: 61 LPWMNFAALVLTPGVPLTHPTPHWSVLKAREAGVEVIGDVELFCRERRLHAPNAPFVAIT 120 Query: 121 GTNGKSTTTALIAHLMKVAGYDTQMGGNIGTAILSLEPPRMGRVHVIEMSSYQIDLAPSL 180 GTNGKSTTTALIAHLM+ AGYDTQMGGNIGTAILSLEPPR GRVHVIEMSSYQIDL PSL Sbjct: 121 GTNGKSTTTALIAHLMRQAGYDTQMGGNIGTAILSLEPPRAGRVHVIEMSSYQIDLTPSL 180 Query: 181 DPSVGILINISEDHIDRHGTLEHYAAVKERLVAGVQQGGTSIVGVDDGWSRNIADRLDRA 240 DPSVGIL+N++EDHIDRHGT+EHYAAVKERLVAGVQ GGT+I+GVDDG+ R+ ADRL+RA Sbjct: 181 DPSVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTAIIGVDDGFGRDAADRLERA 240 Query: 241 GKRVVRISVRNPLPDGLYVEHETILRASGAARSEIARLGGIGSLRGLHNAQNAACASACA 300 GKRVVRISV+ PL G+ + ETI++A G A E+A+L GIGSLRGLHNAQNAA A+A A Sbjct: 241 GKRVVRISVKQPLASGITADRETIVQADGGASHEVAKLDGIGSLRGLHNAQNAAAAAAAA 300 Query: 301 LAMGIATDVLQNGLRSFPGLAHRMEQVGRRGNVLFVNDSKGTNADAAAHALSSFADIYWI 360 LA+G+ DVLQNGLRSFPGLAHRMEQVGR+G LFVNDSKGTNADA A ALSSF +I+WI Sbjct: 301 LALGVGPDVLQNGLRSFPGLAHRMEQVGRQGTTLFVNDSKGTNADATAKALSSFGEIFWI 360 Query: 361 AGGKPKAGGITSLTEYFPRIRKAYLIGEAAAEFSGTLGERVAHEMSGTLD 410 AGGKPK GGI SL EYFPRIRKAYLIGEAA EF+ TL RV +E+S TLD Sbjct: 361 AGGKPKTGGIDSLAEYFPRIRKAYLIGEAAQEFAATLEGRVPYEISVTLD 410 >ref|ZP_08630964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06496.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobiaceae bacterium SG-6C] Length = 465 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/420 (76%), Positives = 364/420 (86%), Gaps = 1/420 (0%) Query: 1 MIPVTSFSGKTVAVFGLGGSGLASCHALKAGGAEVIAADDNADNVAKAAQAGFTTADLRT 60 MIPVTSF GKT+AVFGLGGSGLASC ALKAGGAEVIA+DD +A+AA+ GF TADLRT Sbjct: 1 MIPVTSFKGKTIAVFGLGGSGLASCRALKAGGAEVIASDDTPAKLAEAAREGFITADLRT 60 Query: 61 VSWTNFAALILTPGAPLTHPAPHWSVLKAREAGVEVIGDVELFCRERRRHAPNAPFVAIT 120 VSW NFAAL+LTPG PLTHP PHW+V+ A+ AGVEVIGD+ELFCRERRRHAP+A FVAIT Sbjct: 61 VSWDNFAALVLTPGVPLTHPQPHWTVVAAKAAGVEVIGDIELFCRERRRHAPDASFVAIT 120 Query: 121 GTNGKSTTTALIAHLMKVAGYDTQMGGNIGTAILSLEPPRMGRVHVIEMSSYQIDLAPSL 180 GTNGKSTTTALIAHLM+ AGYDTQMGGNIGTAILSLEPP GRVHVIEMSSYQIDL PSL Sbjct: 121 GTNGKSTTTALIAHLMREAGYDTQMGGNIGTAILSLEPPAKGRVHVIEMSSYQIDLTPSL 180 Query: 181 DPSVGILINISEDHIDRHGTLEHYAAVKERLVAGVQQGGTSIVGVDDGWSRNIADRLDRA 240 DP+VGIL+N++EDHIDRHGT+EHYAAVKERLVAGVQ GT+I+GVDD + IADR+ +A Sbjct: 181 DPAVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQPNGTAIIGVDDPFCAAIADRVAQA 240 Query: 241 GKRVVRISVRNPLPDGLYVEHETILRASGAARSEIARLGGIGSLRGLHNAQNAACASACA 300 GK VVR+SV+ P+ DG+ +E ETI+R G AR+ IA + IGSLRGLHNAQNAACAS Sbjct: 241 GKNVVRVSVKRPVADGICLEGETIVRVDGGARTRIASVAEIGSLRGLHNAQNAACASGAV 300 Query: 301 LAMGIATDVLQNGLRSFPGLAHRMEQVGRRGNVLFVNDSKGTNADAAAHALSSFADIYWI 360 LA+G++ +VLQ GLRSFPGLAHRMEQ+GR+G VLFVNDSKGTNADAAA ALSSF DI+WI Sbjct: 301 LALGVSAEVLQKGLRSFPGLAHRMEQIGRQGQVLFVNDSKGTNADAAARALSSFKDIFWI 360 Query: 361 AGGKPKAGGITSLTEYFPRIRKAYLIGEAAAEFSGTLGERVAHEMSGTLDVAIASAARDA 420 AGGKPK GGI SL E+FPRIRKAYLIGEAA EF+ TLG+ V HE+S TL+ AI AARDA Sbjct: 361 AGGKPKTGGIESLREFFPRIRKAYLIGEAAEEFAKTLGD-VPHEISKTLEEAIPHAARDA 419