BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0074.0005.p (477 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami... 702 0.0 ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-d... 694 0.0 ref|ZP_08630966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-dia... 689 0.0 ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami... 687 0.0 ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami... 685 0.0 >ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB18] gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB18] Length = 479 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/472 (75%), Positives = 405/472 (85%) Query: 5 LWTSDAMATAMRAATQGTLPDGVTGLSIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKAG 64 LWT+ AMA AMRA G LPD + G+SIDSRT+ PG+AYFAI+G+VHDGHAFV AAL AG Sbjct: 6 LWTASAMAEAMRATPSGALPDAIFGISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALNAG 65 Query: 65 AGLAVVETAQRAKFPTDAPLLVVDDVLAGLVELAHASRARLNAQIIAVTGSVGKTSTKEA 124 AGLAVVE AQR KFP DAPLL+VDDVLA LV+L+ ASRARL A++IA+TGSVGKTSTKEA Sbjct: 66 AGLAVVERAQRDKFPADAPLLLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTSTKEA 125 Query: 125 LRRVLSAQGETHASVASFNNHWGVPLSLARCPASTRFAVFEIGMNHAGEITPLVKMVRPH 184 LR V AQGETHASVASFNNHWGVPLSLARCPAS +FAVFEIGMNH GEI PLV +VRPH Sbjct: 126 LRAVFGAQGETHASVASFNNHWGVPLSLARCPASAKFAVFEIGMNHPGEIQPLVALVRPH 185 Query: 185 VAIITTIEPVHLEFFAGIEAIADAKAEIFAGLEPDGAVVLNRDNGQFARLQKQARQAGIS 244 VAIITT+EPVHLEFF +EAIADAKAEIF GLEP+GAVVLNRDN QFARL+K+A+ GIS Sbjct: 186 VAIITTVEPVHLEFFDSVEAIADAKAEIFTGLEPNGAVVLNRDNPQFARLRKRAKAHGIS 245 Query: 245 RIVSFGTDKRAEARLLDLSLHATCSAVHADILDHDITYKIGMPGRHMAMNSLAVLAGASL 304 RIVSFG D++A+ARLLD++L CSAV A + D+TYK+G+PGRHMA+NSLAVLA A L Sbjct: 246 RIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGIPGRHMAINSLAVLAAAEL 305 Query: 305 LGADIARAALSLSQLEAPTGRGFRRTLEVGHGEAMLIDESYNANPASMGAALNVLGQART 364 +GAD+A AAL+LSQ++ GRG R TL V HGEA LIDESYNANPASM AA+NVLGQA Sbjct: 306 VGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPASMAAAINVLGQAAV 365 Query: 365 GPHGRRIAVLGDMLELGPTGPELHRGLNEAVTANRIDLVYCCGPLMRNLWDALSTGKRGG 424 GP GRRIAVLGDMLELGP GP+LHRGL EA+ AN ID V+CCGPLMR LWDALSTGKRGG Sbjct: 366 GPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDTVFCCGPLMRQLWDALSTGKRGG 425 Query: 425 YAESSAALEAQAVAAVRAGDVIMVKGSLGSKMKLIVSALEKRFPDKAAHEEA 476 YAE +AALE+Q +AA+R GDVIMVKGSLGS+MK IV+ALE+R+PD AA +A Sbjct: 426 YAEDAAALESQVIAAIRGGDVIMVKGSLGSRMKTIVTALERRYPDNAALSDA 477 >ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] ref|YP_004633666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Oligotropha carboxidovorans OM5] gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] gb|AEI03848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Oligotropha carboxidovorans OM4] gb|AEI07425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Oligotropha carboxidovorans OM5] Length = 478 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/471 (72%), Positives = 395/471 (83%) Query: 1 MSTMLWTSDAMATAMRAATQGTLPDGVTGLSIDSRTIAPGEAYFAIKGDVHDGHAFVEAA 60 M+T LWT+ AMA AM A G LP+ + G+SIDSRTIAPGEAYFAIKGDVHDGHAFVEAA Sbjct: 1 MTTALWTTAAMAEAMHATRSGALPESINGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAA 60 Query: 61 LKAGAGLAVVETAQRAKFPTDAPLLVVDDVLAGLVELAHASRARLNAQIIAVTGSVGKTS 120 LK G GLAV+ +QRAKF D PLLVV DVLAGLV+LA A+RAR A+I+AVTGSVGKTS Sbjct: 61 LKNGGGLAVIAQSQRAKFSGDLPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTS 120 Query: 121 TKEALRRVLSAQGETHASVASFNNHWGVPLSLARCPASTRFAVFEIGMNHAGEITPLVKM 180 TKEALR VL AQG TH S ASFNNHWGVPLSLARCP +FAVFEIGMNHAGEI PLVK+ Sbjct: 121 TKEALRTVLQAQGATHVSAASFNNHWGVPLSLARCPQDAKFAVFEIGMNHAGEIEPLVKL 180 Query: 181 VRPHVAIITTIEPVHLEFFAGIEAIADAKAEIFAGLEPDGAVVLNRDNGQFARLQKQARQ 240 VRPHVAIITT+EPVHLEFF+GIEAIADAKAEIF GLEP GA +LNRDN QFARL ++A+ Sbjct: 181 VRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAILNRDNSQFARLAERAKA 240 Query: 241 AGISRIVSFGTDKRAEARLLDLSLHATCSAVHADILDHDITYKIGMPGRHMAMNSLAVLA 300 G++RIV+FG ++ A+ARLLD++LHA CSAVHAD+LDHD+TYK+G+ GRHMAMNSLAVLA Sbjct: 241 CGVARIVTFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLA 300 Query: 301 GASLLGADIARAALSLSQLEAPTGRGFRRTLEVGHGEAMLIDESYNANPASMGAALNVLG 360 ++L+G D+A +AL+L+ E GRG R L + G A LIDESYNANPASM AA++VLG Sbjct: 301 ASTLVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLG 360 Query: 361 QARTGPHGRRIAVLGDMLELGPTGPELHRGLNEAVTANRIDLVYCCGPLMRNLWDALSTG 420 + GP GRRIAVLGDMLELGP G ELHRGL A+TANRIDLV+CCGPLM +LWDAL + Sbjct: 361 RVAIGPQGRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLVFCCGPLMHDLWDALPSA 420 Query: 421 KRGGYAESSAALEAQAVAAVRAGDVIMVKGSLGSKMKLIVSALEKRFPDKA 471 ++GGY+E+S LE+Q VA VRAGD IMVKGSLGS+MK+IV+ALEK FP+ A Sbjct: 421 RKGGYSETSVGLESQLVAGVRAGDAIMVKGSLGSRMKVIVTALEKNFPNGA 471 >ref|ZP_08630966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06498.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bradyrhizobiaceae bacterium SG-6C] Length = 478 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/475 (75%), Positives = 404/475 (85%) Query: 1 MSTMLWTSDAMATAMRAATQGTLPDGVTGLSIDSRTIAPGEAYFAIKGDVHDGHAFVEAA 60 MS LWTS AM AMRAA +G LPD VTG+SIDSRT+ PGEAYFAIKGDVHDGH FVEAA Sbjct: 1 MSAALWTSAAMTEAMRAARRGALPDNVTGISIDSRTLTPGEAYFAIKGDVHDGHDFVEAA 60 Query: 61 LKAGAGLAVVETAQRAKFPTDAPLLVVDDVLAGLVELAHASRARLNAQIIAVTGSVGKTS 120 LK GA LAVV + KFP DA LL+VDDVLA LV+LA ASRARL ++IAVTGSVGKTS Sbjct: 61 LKNGASLAVVAESHADKFPADARLLIVDDVLAALVDLAKASRARLGGKVIAVTGSVGKTS 120 Query: 121 TKEALRRVLSAQGETHASVASFNNHWGVPLSLARCPASTRFAVFEIGMNHAGEITPLVKM 180 TKEALR VL QGETHAS ASFNNHWGVPLSLARCPAS +FA+FEIGMNHAGEI PLV+M Sbjct: 121 TKEALRTVLRPQGETHASAASFNNHWGVPLSLARCPASMKFAIFEIGMNHAGEIEPLVRM 180 Query: 181 VRPHVAIITTIEPVHLEFFAGIEAIADAKAEIFAGLEPDGAVVLNRDNGQFARLQKQARQ 240 VRPHVAIITT+EPVHLEFF+GIEAIADAKAEIFAG+EP GA VLNRDN QFARL+K A+ Sbjct: 181 VRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFAGVEPGGAAVLNRDNSQFARLRKSAKA 240 Query: 241 AGISRIVSFGTDKRAEARLLDLSLHATCSAVHADILDHDITYKIGMPGRHMAMNSLAVLA 300 A I +VSFG+D++A+ARL+D+SLHA SAV ADIL HD+TYKI MPGRHMAMNSLAVLA Sbjct: 241 AKIGHVVSFGSDEKADARLIDVSLHAAFSAVRADILGHDVTYKIAMPGRHMAMNSLAVLA 300 Query: 301 GASLLGADIARAALSLSQLEAPTGRGFRRTLEVGHGEAMLIDESYNANPASMGAALNVLG 360 ASL GAD+A AAL+L+QL+ +GRG R L + G A LIDESYNANPASM AA+ VLG Sbjct: 301 AASLAGADLALAALALAQLKPASGRGVREALTLTEGTATLIDESYNANPASMAAAITVLG 360 Query: 361 QARTGPHGRRIAVLGDMLELGPTGPELHRGLNEAVTANRIDLVYCCGPLMRNLWDALSTG 420 QA GP GRRIAVLGDMLELGPTGP+LHRGL EA+T N I+ V+CCGPLMRNLW+AL + Sbjct: 361 QAEVGPRGRRIAVLGDMLELGPTGPDLHRGLAEAITMNGINSVFCCGPLMRNLWEALPST 420 Query: 421 KRGGYAESSAALEAQAVAAVRAGDVIMVKGSLGSKMKLIVSALEKRFPDKAAHEE 475 K+GGYA++SAALE Q V+A+ AGD IMVKGSLGS+MKLIV+AL+KRFPDKAA ++ Sbjct: 421 KKGGYADNSAALEPQVVSAIGAGDAIMVKGSLGSRMKLIVTALQKRFPDKAALDD 475 >ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB5] gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB5] Length = 479 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/472 (76%), Positives = 398/472 (84%) Query: 5 LWTSDAMATAMRAATQGTLPDGVTGLSIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKAG 64 LWTSDAMA AMRAA G+LP V G+SIDSRT+APG+AYFAIKGDVHDGH FV AAL AG Sbjct: 6 LWTSDAMAEAMRAAASGSLPRDVFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAG 65 Query: 65 AGLAVVETAQRAKFPTDAPLLVVDDVLAGLVELAHASRARLNAQIIAVTGSVGKTSTKEA 124 A LAVVE AQRAKF DAPLLVVDDVL GL EL A+RARL+A+IIAVTGSVGKTSTKEA Sbjct: 66 AALAVVERAQRAKFAADAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTSTKEA 125 Query: 125 LRRVLSAQGETHASVASFNNHWGVPLSLARCPASTRFAVFEIGMNHAGEITPLVKMVRPH 184 LR VL AQGETHASVASFNNHWGVPLSLARCPA R+AVFEIGMNHAGEI PLVKMVRPH Sbjct: 126 LRGVLGAQGETHASVASFNNHWGVPLSLARCPADVRYAVFEIGMNHAGEIEPLVKMVRPH 185 Query: 185 VAIITTIEPVHLEFFAGIEAIADAKAEIFAGLEPDGAVVLNRDNGQFARLQKQARQAGIS 244 + IITT+EPVHLEFF+GIEAIADAKAEIFAGL P G VLNRDN F RL AR+AG+ Sbjct: 186 LVIITTVEPVHLEFFSGIEAIADAKAEIFAGLVPGGTAVLNRDNAMFKRLTDSARKAGVG 245 Query: 245 RIVSFGTDKRAEARLLDLSLHATCSAVHADILDHDITYKIGMPGRHMAMNSLAVLAGASL 304 R+VSFG D A+ARLLD++LHA CSAVHA I D+TYK+G+PGRH+AMNSLAVLA A Sbjct: 246 RVVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAAAET 305 Query: 305 LGADIARAALSLSQLEAPTGRGFRRTLEVGHGEAMLIDESYNANPASMGAALNVLGQART 364 +GAD+A AAL+LS ++ GRG RR LE G EA LIDESYNANPASM AAL VLGQ Sbjct: 306 VGADLALAALALSHVQPAAGRGVRRALEFGQSEATLIDESYNANPASMVAALGVLGQVPV 365 Query: 365 GPHGRRIAVLGDMLELGPTGPELHRGLNEAVTANRIDLVYCCGPLMRNLWDALSTGKRGG 424 GP GRRI VLGDMLELGP GPELHR L E+V N IDLV+CCGPLMRNLWDALS+GKRGG Sbjct: 366 GPQGRRIVVLGDMLELGPAGPELHRDLAESVRNNAIDLVFCCGPLMRNLWDALSSGKRGG 425 Query: 425 YAESSAALEAQAVAAVRAGDVIMVKGSLGSKMKLIVSALEKRFPDKAAHEEA 476 YAE++AALE+Q VAA+RAGDV+M+KGSLGS+MK IV+ALEKRFP K A ++A Sbjct: 426 YAETAAALESQVVAAIRAGDVLMIKGSLGSRMKTIVTALEKRFPGKTARDDA 477 >ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris HaA2] gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris HaA2] Length = 479 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/472 (75%), Positives = 402/472 (85%) Query: 5 LWTSDAMATAMRAATQGTLPDGVTGLSIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKAG 64 LWTSDA+ AM AA QGT V G+SIDSRT+APG+AYFAI+GDVHDGH FVEAALKAG Sbjct: 6 LWTSDAIIAAMGAAVQGTPARDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAALKAG 65 Query: 65 AGLAVVETAQRAKFPTDAPLLVVDDVLAGLVELAHASRARLNAQIIAVTGSVGKTSTKEA 124 A LAVVETAQR KF DAPLL+VDDVL GL +L A+RARL+A++IAVTGSVGKTSTKEA Sbjct: 66 AALAVVETAQRGKFAPDAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTSTKEA 125 Query: 125 LRRVLSAQGETHASVASFNNHWGVPLSLARCPASTRFAVFEIGMNHAGEITPLVKMVRPH 184 LR VL AQGETHASVASFNNHWGVPL+LARCPAS R+AVFEIGMNHAGEI PLVKMVRPH Sbjct: 126 LRGVLGAQGETHASVASFNNHWGVPLTLARCPASVRYAVFEIGMNHAGEIEPLVKMVRPH 185 Query: 185 VAIITTIEPVHLEFFAGIEAIADAKAEIFAGLEPDGAVVLNRDNGQFARLQKQARQAGIS 244 +AIITT+EPVHLEFF+GIEAIADAKAEIF+GLEP G VLNRDN F RL AR+AG+ Sbjct: 186 LAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEPGGIAVLNRDNPMFKRLTASARKAGVE 245 Query: 245 RIVSFGTDKRAEARLLDLSLHATCSAVHADILDHDITYKIGMPGRHMAMNSLAVLAGASL 304 RIVSFG +A+ARL D++LHA CSAV A IL HD+TYK+ +PGRH+AMNSLAVLA A L Sbjct: 246 RIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIAMNSLAVLAAADL 305 Query: 305 LGADIARAALSLSQLEAPTGRGFRRTLEVGHGEAMLIDESYNANPASMGAALNVLGQART 364 +GAD+A AAL+L+Q+E GRG RRTLE+G G A LIDESYNANPASM AAL VLG A Sbjct: 306 VGADLALAALALAQVEPAAGRGVRRTLELGQGAATLIDESYNANPASMAAALGVLGSAEI 365 Query: 365 GPHGRRIAVLGDMLELGPTGPELHRGLNEAVTANRIDLVYCCGPLMRNLWDALSTGKRGG 424 GRRIAVLGDMLELGP GPELHRGL V +N +DLV+CCGPLM NLWDALS+GKRGG Sbjct: 366 SGQGRRIAVLGDMLELGPAGPELHRGLAGTVQSNAVDLVFCCGPLMHNLWDALSSGKRGG 425 Query: 425 YAESSAALEAQAVAAVRAGDVIMVKGSLGSKMKLIVSALEKRFPDKAAHEEA 476 YAE++AALE+Q VAAVR+GDV+M+KGSLGS+MK IV+ALEKRFP KAA ++A Sbjct: 426 YAETAAALESQVVAAVRSGDVLMIKGSLGSRMKTIVTALEKRFPGKAALDDA 477