BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0026.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774572.1| ABC transporter permease protein [Bradyrhizobiu... 370 e-100 ref|ZP_08630860.1| high-affinity branched-chain amino acid trans... 358 5e-97 ref|NP_946581.1| putative ABC transporter permease [Rhodopseudom... 282 4e-74 ref|YP_004157885.1| inner-membrane translocator [Variovorax para... 204 1e-50 emb|CBA27028.1| hypothetical protein Csp_A00230 [Curvibacter put... 204 2e-50 >ref|NP_774572.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53197.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/195 (94%), Positives = 191/195 (97%) Query: 1 MLDFVQQLVSGIALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFIGMLGLN 60 MLDFVQQLVSG+ALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFIGM+GLN Sbjct: 1 MLDFVQQLVSGVALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFIGMMGLN 60 Query: 61 YWVGFAGAVICMALFGMLAERLVVRPILGYPQFSIIMATIGLGYFLRSISGMIWGTDDFK 120 YW+GFAGAV MALFGMLAER+VVRPILGYPQFSIIMATIGLGYFLRSI+GMIWGTDD K Sbjct: 61 YWIGFAGAVAAMALFGMLAERVVVRPILGYPQFSIIMATIGLGYFLRSIAGMIWGTDDLK 120 Query: 121 IETPFSQGVLRIGSLVLAYDKLSVIAATIILCALLYLFFNRTTLGTAMRASSENMLAAYY 180 IETPFSQGVLRIGSLVLAYDKLSVIAAT+ILC LL+LFFNRTTLGTAMRASSENMLAAYY Sbjct: 121 IETPFSQGVLRIGSLVLAYDKLSVIAATMILCTLLWLFFNRTTLGTAMRASSENMLAAYY 180 Query: 181 MGIPVKRVVSIVWAI 195 MGIPVKRVVSIVWAI Sbjct: 181 MGIPVKRVVSIVWAI 195 >ref|ZP_08630860.1| high-affinity branched-chain amino acid transport system permease [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06392.1| high-affinity branched-chain amino acid transport system permease [Bradyrhizobiaceae bacterium SG-6C] Length = 291 Score = 358 bits (919), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 177/195 (90%), Positives = 186/195 (95%) Query: 1 MLDFVQQLVSGIALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFIGMLGLN 60 MLDFVQQLVSGIALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFI +LG N Sbjct: 1 MLDFVQQLVSGIALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFISLLGFN 60 Query: 61 YWVGFAGAVICMALFGMLAERLVVRPILGYPQFSIIMATIGLGYFLRSISGMIWGTDDFK 120 YW+GF AV MALFGMLAERLVVRPILGYPQFSIIMATIGLG+FLRS++GMIWGTDD K Sbjct: 61 YWLGFIAAVAAMALFGMLAERLVVRPILGYPQFSIIMATIGLGFFLRSVAGMIWGTDDLK 120 Query: 121 IETPFSQGVLRIGSLVLAYDKLSVIAATIILCALLYLFFNRTTLGTAMRASSENMLAAYY 180 IETPFS GVLR+GSLVLAYDKLSVIAAT+ILC +LYLFFN+TTLGTAMRASSENMLAAYY Sbjct: 121 IETPFSHGVLRLGSLVLAYDKLSVIAATVILCGVLYLFFNKTTLGTAMRASSENMLAAYY 180 Query: 181 MGIPVKRVVSIVWAI 195 MGIPVKRVVSIVWAI Sbjct: 181 MGIPVKRVVSIVWAI 195 >ref|NP_946581.1| putative ABC transporter permease [Rhodopseudomonas palustris CGA009] ref|YP_001990438.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] emb|CAE26673.1| putative ABC transporter, permease protein [Rhodopseudomonas palustris CGA009] gb|ACE99962.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] Length = 290 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 135/195 (69%), Positives = 165/195 (84%) Query: 1 MLDFVQQLVSGIALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFIGMLGLN 60 MLDFVQQ++ GIALGCVYGLIALGFVL+YKATEVVNFAQG++MMLG F +FTFI LGLN Sbjct: 1 MLDFVQQVIGGIALGCVYGLIALGFVLIYKATEVVNFAQGEIMMLGAFLSFTFIATLGLN 60 Query: 61 YWVGFAGAVICMALFGMLAERLVVRPILGYPQFSIIMATIGLGYFLRSISGMIWGTDDFK 120 YW GF V+ MA+ G ERLVVRPILGYPQFSI+MATIGLG +RS+ G+IWGTDD + Sbjct: 61 YWFGFLLCVVSMAVLGAAMERLVVRPILGYPQFSIVMATIGLGLVIRSLVGIIWGTDDLR 120 Query: 121 IETPFSQGVLRIGSLVLAYDKLSVIAATIILCALLYLFFNRTTLGTAMRASSENMLAAYY 180 IETPF+ GV+++G LVL+ D LS+I AT +LCA+LY FF T +G AM+A+S+NMLAAYY Sbjct: 121 IETPFTGGVIQLGGLVLSQDSLSIIVATALLCAVLYAFFRFTKIGIAMQATSQNMLAAYY 180 Query: 181 MGIPVKRVVSIVWAI 195 MGIPVKR+ S++W++ Sbjct: 181 MGIPVKRMFSLIWSL 195 >ref|YP_004157885.1| inner-membrane translocator [Variovorax paradoxus EPS] gb|ADU39774.1| inner-membrane translocator [Variovorax paradoxus EPS] Length = 291 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 104/196 (53%), Positives = 140/196 (71%), Gaps = 2/196 (1%) Query: 2 LDFVQQLVSGIALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFIGMLGLNY 61 + +Q L+SGIA GC+YGLIALGFVL+YKATE V+FAQGDLMMLG F AF + + G+ + Sbjct: 1 MQILQLLLSGIAQGCIYGLIALGFVLIYKATETVSFAQGDLMMLGAFGAFAGMSIFGMPF 60 Query: 62 WVGFAGAVICMALFGMLAERLVVRPILGYPQFSIIMATIGLGYFLRSISGMIW--GTDDF 119 W+ AV+ MA FG+L E V+RPILG PQFSI+M TIG+ Y R + M+ GT+ Sbjct: 61 WLAAILAVVAMAAFGVLLELAVIRPILGQPQFSIVMLTIGIAYVARGLITMVPGIGTETH 120 Query: 120 KIETPFSQGVLRIGSLVLAYDKLSVIAATIILCALLYLFFNRTTLGTAMRASSENMLAAY 179 + P+ + ++G LV+ ++L++I AT ILCALL+ F + LG AM+ASS+N LAAY Sbjct: 121 TLPVPYKDQIWKLGELVVNLEQLAIIVATAILCALLFAMFRYSKLGIAMQASSQNQLAAY 180 Query: 180 YMGIPVKRVVSIVWAI 195 YMGIPVKR+ +VW + Sbjct: 181 YMGIPVKRLNGLVWGL 196 >emb|CBA27028.1| hypothetical protein Csp_A00230 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 298 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 106/203 (52%), Positives = 141/203 (69%), Gaps = 9/203 (4%) Query: 2 LDFVQQLVSGIALGCVYGLIALGFVLVYKATEVVNFAQGDLMMLGGFFAFTFIGMLGLNY 61 + F+Q L+SG+A GC+YGLIALGFVL+YKATE V+FAQG+LMMLG F + MLG+ Y Sbjct: 1 MQFLQLLISGVAQGCIYGLIALGFVLIYKATETVSFAQGELMMLGAFGGLVGMTMLGIPY 60 Query: 62 WVGFAGAVICMALFGMLAERLVVRPILGYPQFSIIMATIGLGYFLRSISGMIW--GTDDF 119 W+ A++ MA+FG+L ERLV+RPILG P FSI+M TIG+GY R + MI GTD Sbjct: 61 WIAVPSAILGMAIFGVLLERLVIRPILGQPAFSIVMLTIGIGYVARGLITMIPGIGTDTN 120 Query: 120 KIETPFSQGVLR-------IGSLVLAYDKLSVIAATIILCALLYLFFNRTTLGTAMRASS 172 + P+ +L+ IG+LVL + L +I AT +LC LL+ F T LG AM+A+S Sbjct: 121 ALPVPYKDEILKFGGNEMGIGALVLNVEHLVIIGATGVLCVLLFALFRYTKLGIAMQAAS 180 Query: 173 ENMLAAYYMGIPVKRVVSIVWAI 195 +N LAAYYMGIPV+R+ + W + Sbjct: 181 QNQLAAYYMGIPVQRLNGLAWGL 203