BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0024.p (497 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774574.1| hypothetical protein blr7934 [Bradyrhizobium ja... 629 e-178 ref|YP_001242946.1| hypothetical protein BBta_7158 [Bradyrhizobi... 611 e-172 ref|YP_001203036.1| putative permease [Bradyrhizobium sp. ORS 27... 587 e-165 ref|YP_571471.1| hypothetical protein RPD_4353 [Rhodopseudomonas... 560 e-157 ref|YP_004677834.1| hypothetical protein HYPMC_4059 [Hyphomicrob... 401 e-109 >ref|NP_774574.1| hypothetical protein blr7934 [Bradyrhizobium japonicum USDA 110] dbj|BAC53199.1| blr7934 [Bradyrhizobium japonicum USDA 110] Length = 508 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 375/507 (73%), Positives = 423/507 (83%), Gaps = 10/507 (1%) Query: 1 VSSVAHLTWFARHEFRLAWREWLAMMTGGRRRRNR-AVIGLLIFAAILHLPAYAVVSRYA 59 +SS L+WFARHE RLAWREWLAMMTGGRRRR R AVIGLL+FAA+LH+PA+AV+ R A Sbjct: 1 MSSATALSWFARHELRLAWREWLAMMTGGRRRRTRVAVIGLLLFAALLHVPAWAVIGRVA 60 Query: 60 DLRFPLDPSSLIVLTATIFLAWALMLSQAIESVTRVFYARADLDLIMSSPAKLTNIFSIR 119 DL+ PLD SSLIV+TATIFLAW LMLSQAIESVTRVFYARADLDLIMSSPA L N+FS+R Sbjct: 61 DLQLPLDKSSLIVITATIFLAWTLMLSQAIESVTRVFYARADLDLIMSSPATLANLFSVR 120 Query: 120 IAAIALTVSSMALLLSTPFIDVLVYLGGPRWLAGFGVVLA--------AIAVTAFLFRLI 171 IAAIAL V+ +ALL STPFIDVLV GGPRWLA FGVV+A AIAVT LFRLI Sbjct: 121 IAAIALAVTVLALLFSTPFIDVLVIGGGPRWLAAFGVVVAMGLSAAAIAIAVTILLFRLI 180 Query: 172 EPSRTRLVAQVVSAVIGAGFVIALQVVAVLSYGTLSRFAFLTSETAARIAPAPDSLLWWP 231 P+RTR VAQ+++A+IGAGFVIALQV A++SYGTLSRF LTS T A AP DS+ WWP Sbjct: 181 GPARTRFVAQILAAIIGAGFVIALQVAAIMSYGTLSRFTILTSGTFAEHAPDADSIWWWP 240 Query: 232 ARASLGDLEIMMLLLAAALVMLGGVMAIFAPRFADTVASVAANPAAVTRG-RARAFRAGS 290 ARA+LGD E ++LLLA LVMLGGVMAIF+ RFADT AA + R + R FR GS Sbjct: 241 ARAALGDSEALLLLLALGLVMLGGVMAIFSGRFADTAIDAAAYGTSGRRSAKQRPFRGGS 300 Query: 291 RQQALRRKEFLLLRRDPWLLSQSLMQMLYLLPPALMLWRSFSGTSTAIVLITPVIVMAAG 350 RQQALRRKEF LL RDPWL+SQ+LMQ+LYL+PPAL+LWRSF+ +S A+ LITPVIVMAAG Sbjct: 301 RQQALRRKEFSLLWRDPWLISQTLMQLLYLVPPALLLWRSFADSSAALTLITPVIVMAAG 360 Query: 351 QLAGGLAWLTISGEDAPDLVATAPLPPSRVTRAKVEVVLFAIAVVFAPLVAALAFASPGQ 410 QLAGGLAWLTISGEDAPDLVATAPL PS V RAK+EVVL AIAV+F PLVAALAFASP Q Sbjct: 361 QLAGGLAWLTISGEDAPDLVATAPLTPSSVIRAKIEVVLIAIAVIFCPLVAALAFASPIQ 420 Query: 411 AAVTAIAILIATASAAAVQLWFRAQAKRSQFRRRQTSSRIATFAEAFSSIGWAATAALAL 470 AAV+A AI+I+ ASA A+QLWFR QA+RSQFRRRQTSSR+ATFAEAFSSIGWAATAAL L Sbjct: 421 AAVSAGAIIISAASATAIQLWFRVQARRSQFRRRQTSSRLATFAEAFSSIGWAATAALLL 480 Query: 471 TIPTAALVSGILTLLTLAIAWKISPRR 497 +P A LVSG++T +AI WK SPRR Sbjct: 481 ALPLAGLVSGLITASLVAITWKFSPRR 507 >ref|YP_001242946.1| hypothetical protein BBta_7158 [Bradyrhizobium sp. BTAi1] gb|ABQ39040.1| putative membrane protein of unknown function with permease domain [Bradyrhizobium sp. BTAi1] Length = 508 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 352/507 (69%), Positives = 417/507 (82%), Gaps = 10/507 (1%) Query: 1 VSSVAHLTWFARHEFRLAWREWLAMMTGGRRRRNR-AVIGLLIFAAILHLPAYAVVSRYA 59 ++ A L WFARHE RLAWREWL+M+T GRRRR R A+IGLL+F AI+HLPA+ VV RYA Sbjct: 1 MTRTATLAWFARHELRLAWREWLSMITAGRRRRTRVAIIGLLLFGAIMHLPAWVVVGRYA 60 Query: 60 DLRFPLDPSSLIVLTATIFLAWALMLSQAIESVTRVFYARADLDLIMSSPAKLTNIFSIR 119 DLR PLD ++LIV+TATI L+WALMLSQAIESVTRVFYARADLDLIMSSP +L IFS+R Sbjct: 61 DLRPPLDKTALIVITATIMLSWALMLSQAIESVTRVFYARADLDLIMSSPVRLAEIFSVR 120 Query: 120 IAAIALTVSSMALLLSTPFIDVLVYLGGPRWLA--------GFGVVLAAIAVTAFLFRLI 171 IAAIAL+V+SMALLL+TPF+D+L+ GG RWLA G AIA+T LFRLI Sbjct: 121 IAAIALSVTSMALLLATPFVDILLIEGGLRWLAVFVVVAAVGLTAAAIAIAITIVLFRLI 180 Query: 172 EPSRTRLVAQVVSAVIGAGFVIALQVVAVLSYGTLSRFAFLTSETAARIAPAPDSLLWWP 231 P+RTRLVAQ+++AVIGAGFVI LQ+ A++SYGTLSRFA LTS+ AA IAP PDSL+W P Sbjct: 181 GPARTRLVAQILAAVIGAGFVIVLQIAAIVSYGTLSRFAVLTSDAAAAIAPDPDSLIWLP 240 Query: 232 ARASLGDLEIMMLLLAAALVMLGGVMAIFAPRFADTVASVAANPAAVTRG-RARAFRAGS 290 ARA+LGD + +++LLA L++LG VM +FAPRFADT S AA + G RAFR GS Sbjct: 241 ARAALGDGQALLILLATGLLLLGVVMLLFAPRFADTAISAAAQGVSSRAGAHVRAFRGGS 300 Query: 291 RQQALRRKEFLLLRRDPWLLSQSLMQMLYLLPPALMLWRSFSGTSTAIVLITPVIVMAAG 350 RQQALRRKEF+LLRRDPWL+SQ+LMQ+LYL+PPAL+LWRS+S +S A++LITPVIVMAAG Sbjct: 301 RQQALRRKEFMLLRRDPWLISQTLMQLLYLVPPALLLWRSYSDSSQAVILITPVIVMAAG 360 Query: 351 QLAGGLAWLTISGEDAPDLVATAPLPPSRVTRAKVEVVLFAIAVVFAPLVAALAFASPGQ 410 QLAGGLAWLTISGEDAP+LVATAPL R RAK+EVVL IAV+FAPLV ALA+ +P Q Sbjct: 361 QLAGGLAWLTISGEDAPELVATAPLTAGRAMRAKIEVVLITIAVIFAPLVLALAWIAPAQ 420 Query: 411 AAVTAIAILIATASAAAVQLWFRAQAKRSQFRRRQTSSRIATFAEAFSSIGWAATAALAL 470 A VTA A+LIAT S+ A+QLWFR QA+RSQFRRRQTSSR+ATFAEAFSSIGWAATAALAL Sbjct: 421 AMVTATAVLIATVSSTAIQLWFRIQARRSQFRRRQTSSRLATFAEAFSSIGWAATAALAL 480 Query: 471 TIPTAALVSGILTLLTLAIAWKISPRR 497 +P A++ G++T L AWK+SP R Sbjct: 481 ALPEGAVICGLMTAALLFAAWKLSPPR 507 >ref|YP_001203036.1| putative permease [Bradyrhizobium sp. ORS 278] emb|CAL74799.1| Conserved hypothetical protein; Putative membrane protein; putative permease [Bradyrhizobium sp. ORS 278] Length = 508 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 350/503 (69%), Positives = 417/503 (82%), Gaps = 10/503 (1%) Query: 5 AHLTWFARHEFRLAWREWLAMMTGGRRRRNRAVI-GLLIFAAILHLPAYAVVSRYADLRF 63 A L WFARHE RLAWREWL M+T GRRRR RA I GL++F AI+HLPA+AVV RYADL+ Sbjct: 5 ATLAWFARHEIRLAWREWLGMITAGRRRRTRAAIIGLVLFGAIMHLPAWAVVGRYADLQP 64 Query: 64 PLDPSSLIVLTATIFLAWALMLSQAIESVTRVFYARADLDLIMSSPAKLTNIFSIRIAAI 123 PLD + LIV+TATI L+WALMLSQAIESVTRVFYARADLDLIMSSP +L IFS+RIAAI Sbjct: 65 PLDKTELIVITATIMLSWALMLSQAIESVTRVFYARADLDLIMSSPVRLAEIFSVRIAAI 124 Query: 124 ALTVSSMALLLSTPFIDVLVYLGGPRWLA--------GFGVVLAAIAVTAFLFRLIEPSR 175 AL+V+SMALLL+TPF+DVL+ GG RWLA G AIA+T LFRLI P+R Sbjct: 125 ALSVTSMALLLATPFVDVLLIEGGVRWLAAFVVVAAVGLTAAALAIAITIVLFRLIGPAR 184 Query: 176 TRLVAQVVSAVIGAGFVIALQVVAVLSYGTLSRFAFLTSETAARIAPAPDSLLWWPARAS 235 TRLVAQ+++AVIGAGFVI LQ+ A++SYGTLSRFA LTS+ AA IAP PDSL+W PARA+ Sbjct: 185 TRLVAQILAAVIGAGFVIMLQIAAIVSYGTLSRFAVLTSDAAAAIAPDPDSLVWLPARAA 244 Query: 236 LGDLEIMMLLLAAALVMLGGVMAIFAPRFADTVASVAANPAAVTRG-RARAFRAGSRQQA 294 LGD + +++LLAA L++LG VM +F+PRFADT S AA + G + R+FR GSRQQA Sbjct: 245 LGDPQALLILLAAGLLLLGVVMMVFSPRFADTAISAAAQGVSSRAGAQIRSFRGGSRQQA 304 Query: 295 LRRKEFLLLRRDPWLLSQSLMQMLYLLPPALMLWRSFSGTSTAIVLITPVIVMAAGQLAG 354 LRRKE +LLRRDPWL+SQ+LMQ+LYL+PPAL+LWRS+S +S A++LITPV VMAAGQLAG Sbjct: 305 LRRKELMLLRRDPWLISQTLMQLLYLVPPALLLWRSYSDSSQAVILITPVFVMAAGQLAG 364 Query: 355 GLAWLTISGEDAPDLVATAPLPPSRVTRAKVEVVLFAIAVVFAPLVAALAFASPGQAAVT 414 GLAWLTISGEDAP+LVATAPLP +R+ RAK+EVVL IAV+FAPLV ALA+ +P QA VT Sbjct: 365 GLAWLTISGEDAPELVATAPLPAARIVRAKIEVVLMTIAVIFAPLVVALAWVAPWQALVT 424 Query: 415 AIAILIATASAAAVQLWFRAQAKRSQFRRRQTSSRIATFAEAFSSIGWAATAALALTIPT 474 A A+LIAT S+ A+QLWFR QA+RSQFRRRQTSSR+ATFAEAFSSIGWAATAALA+ +P Sbjct: 425 AAAVLIATISSTAIQLWFRIQARRSQFRRRQTSSRLATFAEAFSSIGWAATAALAIALPE 484 Query: 475 AALVSGILTLLTLAIAWKISPRR 497 AA++ G++T L AWK+SP R Sbjct: 485 AAVICGLITAGLLFAAWKLSPAR 507 >ref|YP_571471.1| hypothetical protein RPD_4353 [Rhodopseudomonas palustris BisB5] gb|ABE41570.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 508 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 329/503 (65%), Positives = 386/503 (76%), Gaps = 10/503 (1%) Query: 3 SVAHLTWFARHEFRLAWREWLAMMTGGRRRRNRAVI-GLLIFAAILHLPAYAVVSRYADL 61 S L FARH+ RLAWR+++AMMT GRR R R ++ L++F A+LHLPA+A+V YA L Sbjct: 2 SAGTLAGFARHDIRLAWRDFVAMMTAGRRGRARNIVLALIVFGALLHLPAWAMVGSYAGL 61 Query: 62 RFPLDPSSLIVLTATIFLAWALMLSQAIESVTRVFYARADLDLIMSSPAKLTNIFSIRIA 121 D +SLIV+ AT+ L+W LMLSQAIESVTRVFYARADLDLIMSSPA L +FS+R+A Sbjct: 62 TQDADQASLIVIAATVALSWLLMLSQAIESVTRVFYARADLDLIMSSPAPLERVFSVRMA 121 Query: 122 AIALTVSSMALLLSTPFIDVLVYLGGPRWLAGFGVVLA--------AIAVTAFLFRLIEP 173 AIALTV++MALL + P I+VL +GG WL FGVV A AIAVT LF LI P Sbjct: 122 AIALTVTAMALLFAAPVINVLALVGGAHWLTAFGVVAAVGISASAIAIAVTVALFHLIGP 181 Query: 174 SRTRLVAQVVSAVIGAGFVIALQVVAVLSYGTLSRFAFLTSETAARIAPAPDSLLWWPAR 233 RTR+VAQ++S VIGAGFVI LQ+ A++S GTLSRFA LTSETAA APA S+LWWPAR Sbjct: 182 RRTRVVAQILSVVIGAGFVIGLQIAAIISTGTLSRFAVLTSETAASWAPAMTSVLWWPAR 241 Query: 234 ASLGDLEIMMLLLAAALVMLGGVMAIFAPRFADTVASVAANPAAVTRGR-ARAFRAGSRQ 292 A LGD + LL A+L++LG VM + AP + V + A+ A R R FR GSRQ Sbjct: 242 AILGDGVALAALLGASLIVLGLVMLLVAPGLGNLVVNAASVGAKAARDRRGGQFRRGSRQ 301 Query: 293 QALRRKEFLLLRRDPWLLSQSLMQMLYLLPPALMLWRSFSGTSTAIVLITPVIVMAAGQL 352 QALR KEF+LLRRDPWL+SQSLMQ+LYL+PPAL+LWR+FS STAIVLITPVIVMAAGQL Sbjct: 302 QALRIKEFILLRRDPWLVSQSLMQLLYLVPPALLLWRNFSDRSTAIVLITPVIVMAAGQL 361 Query: 353 AGGLAWLTISGEDAPDLVATAPLPPSRVTRAKVEVVLFAIAVVFAPLVAALAFASPGQAA 412 AGGLAWLTISGEDAPDLVATAPLP S V RA++EVVL IA+V PL+ LA+ SP QA Sbjct: 362 AGGLAWLTISGEDAPDLVATAPLPASAVMRARIEVVLMVIAIVVTPLLLPLAWLSPLQAL 421 Query: 413 VTAIAILIATASAAAVQLWFRAQAKRSQFRRRQTSSRIATFAEAFSSIGWAATAALALTI 472 +TA IA ASA A+QLWFR QA+RSQFRRRQTSSR+ATFAEAFSSIGWAATAALALT+ Sbjct: 422 LTAAGCAIAAASATAIQLWFRVQARRSQFRRRQTSSRVATFAEAFSSIGWAATAALALTV 481 Query: 473 PTAALVSGILTLLTLAIAWKISP 495 P AL++ TL LA+ WK SP Sbjct: 482 PQLALIAAAFTLGVLALTWKFSP 504 >ref|YP_004677834.1| hypothetical protein HYPMC_4059 [Hyphomicrobium sp. MC1] emb|CCB67268.1| conserved membrane protein of unknown function [Hyphomicrobium sp. MC1] Length = 520 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/474 (49%), Positives = 321/474 (67%), Gaps = 17/474 (3%) Query: 3 SVAHLTWFARHEFRLAWREWLAMMTGGRRRRNRAVI-GLLIFAAILHLPAYAVVSRY--- 58 +VA ++WFARHEFRLAWR+ M+ GGR RR R ++ G + A LH AY V+SR Sbjct: 2 TVASVSWFARHEFRLAWRDIAQMLAGGRTRRERTLLAGAAVIIAALHGLAYIVLSRVLTD 61 Query: 59 ADLRFPLDPSSLIVLTATIFLAWALMLSQAIESVTRVFYARADLDLIMSSPAKLTNIFSI 118 ADL +LI LTA+I L +++MLSQA+E VTR FYAR+DLDLI+SSPA N+F++ Sbjct: 62 ADLA---SKGTLITLTASILLTFSMMLSQAVEQVTRAFYARSDLDLILSSPASSRNLFAV 118 Query: 119 RIAAIALTVSSMALLLSTPFIDVLVYLGGPRWLAGFGVVLA--------AIAVTAFLFRL 170 RI +IA+T + M + P I+V ++ GPRWL+ + V+ A+ VT LFR+ Sbjct: 119 RICSIAITGAIMTAAMIAPAINVAAWIDGPRWLSAYAVIAGLSAFATGLAVLVTLGLFRV 178 Query: 171 IEPSRTRLVAQVVSAVIGAGFVIALQVVAVLSYGTLSRFAFLTSETAARIAPAPDSLLWW 230 +TR +AQ+++AV+GA +I LQ AV +YG LSRF+ L SE +R APA D+L+W Sbjct: 179 AGAQKTRFIAQIIAAVVGATLLIGLQAAAVFAYGRLSRFSVLNSEAVSRAAPALDNLIWM 238 Query: 231 PARASLGDLEIMMLLLAAALVMLGGVMAIFAPRFADTV--ASVAANPAAVTRGRARAFRA 288 PARA+LGD+ + +AA + L V+ +F+P+F+ AS + + R ++FRA Sbjct: 239 PARAALGDVNAAIATIAAGVAFLALVIIVFSPQFSANAIAASGDSTQQSERRSNGKSFRA 298 Query: 289 GSRQQALRRKEFLLLRRDPWLLSQSLMQMLYLLPPALMLWRSFSGTSTAIVLITPVIVMA 348 S ALRRKE +LL RDPWLLSQ+LMQ+LYL+PPAL+LWR + V++ PV+VMA Sbjct: 299 ASSVSALRRKELILLARDPWLLSQTLMQVLYLIPPALLLWRDMGTDTHGAVILAPVLVMA 358 Query: 349 AGQLAGGLAWLTISGEDAPDLVATAPLPPSRVTRAKVEVVLFAIAVVFAPLVAALAFASP 408 GQL+GGLAWLTISGEDAPDL+ATAP+ + RAK+E VL I V P V +A+ S Sbjct: 359 FGQLSGGLAWLTISGEDAPDLIATAPVISTTAIRAKIEAVLLVIGCVAVPFVVGMAYLSL 418 Query: 409 GQAAVTAIAILIATASAAAVQLWFRAQAKRSQFRRRQTSSRIATFAEAFSSIGW 462 A TA AI A+ SA +QLWF++ A+R+QFRRRQT+++IATF+EAFSS+ W Sbjct: 419 SGAVATAAAITAASVSAIVIQLWFKSAARRAQFRRRQTATKIATFSEAFSSVFW 472