BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0017.p (453 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774582.1| 3-carboxy-cis,cis-muconate cycloisomerase [Brad... 795 0.0 ref|ZP_02883379.1| fumarate lyase [Burkholderia graminis C4D1M] ... 722 0.0 ref|YP_004681789.1| GntR family transcriptional regulator [Cupri... 716 0.0 ref|YP_999314.1| fumarate lyase [Verminephrobacter eiseniae EF01... 714 0.0 ref|YP_002496092.1| 3-carboxy-cis,cis-muconate cycloisomerase [M... 711 0.0 >ref|NP_774582.1| 3-carboxy-cis,cis-muconate cycloisomerase [Bradyrhizobium japonicum USDA 110] dbj|BAC53207.1| pcaB [Bradyrhizobium japonicum USDA 110] Length = 453 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/453 (85%), Positives = 417/453 (92%) Query: 1 MSAFPTSTTVLDSVLFRDAFGTREMREVFSDLRLIERYAEVEVALAKAEARCGVIPAEAA 60 M A STTVLDS+LFRDAFGT EMREVFSD+ L+ RYAEVEVALAKAEA+CGVIP +AA Sbjct: 1 MPALHASTTVLDSMLFRDAFGTPEMREVFSDVALVARYAEVEVALAKAEAKCGVIPQDAA 60 Query: 61 AEIAKRTDVAALDFDLLRQETDVVGYPILPLVHQMAKQCGEAGRYVHWGATTQDIMDTAV 120 +IA RTDVAALDFDLLRQETD+VGYPILPLVHQM KQCG+AGRYVHWGATTQDIMDTAV Sbjct: 61 DQIAARTDVAALDFDLLRQETDIVGYPILPLVHQMVKQCGDAGRYVHWGATTQDIMDTAV 120 Query: 121 VLQLRDGLKIIEDDIPALRGILADLSKTYRDTPMAGRTHLQQALPVTFGYKTAIWLAAFD 180 VLQLR L+I+E DI LR ILADLS+ +RDTPMAGRTHLQQALPVTFGYKTAIWLA FD Sbjct: 121 VLQLRAALEIVERDIAELRKILADLSRRHRDTPMAGRTHLQQALPVTFGYKTAIWLAMFD 180 Query: 181 RHAARLVELKPRVLVGQFAGAAGTLASLGDKGFEVQQALCEELGLGVPVSTWHVARDGLA 240 RHA RL +LKPRVLVG+FAGAAGTLASLGDKGFEVQ+ALC+EL LGVP STWHVARDG A Sbjct: 181 RHAERLAQLKPRVLVGEFAGAAGTLASLGDKGFEVQEALCDELKLGVPASTWHVARDGFA 240 Query: 241 EAVNFLALVTGTLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAA 300 EAVNFLALVTG+LGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAA Sbjct: 241 EAVNFLALVTGSLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAA 300 Query: 301 AKAVRQHAGLMLDAMVQDFERATGPWHAEWIAIPESFVLTAGALHQARFALGGLIVDEQR 360 +KAVRQHAGLMLDAMVQDFERATGPWHAEW+AIPESFVL AGALHQARFAL GLIVDE + Sbjct: 301 SKAVRQHAGLMLDAMVQDFERATGPWHAEWMAIPESFVLAAGALHQARFALAGLIVDEAK 360 Query: 361 MADNLDISRGLIVAEAVMMGLAPAIGRQEAHDVVYDACRVANDKGLTLAEALAADDRVAS 420 M DNL ISRGLIVAEAVMMGLAP IGRQEAHDVVYDACR+AN+KGLTLA+AL++D RV++ Sbjct: 361 MNDNLAISRGLIVAEAVMMGLAPQIGRQEAHDVVYDACRLANEKGLTLADALSSDSRVSA 420 Query: 421 RVDRATIDRLTAPKNYLGLAPEMVDRVLATVKR 453 R+DRATID LT+PKNYLGLAP MVDRVL + R Sbjct: 421 RIDRATIDALTSPKNYLGLAPAMVDRVLKSATR 453 >ref|ZP_02883379.1| fumarate lyase [Burkholderia graminis C4D1M] gb|EDT10811.1| fumarate lyase [Burkholderia graminis C4D1M] Length = 456 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/448 (77%), Positives = 390/448 (87%) Query: 2 SAFPTSTTVLDSVLFRDAFGTREMREVFSDLRLIERYAEVEVALAKAEARCGVIPAEAAA 61 SAFP ++TV+DS+LFRDAFGT +MR VFSD LI+RY +VEVALAKAEAR GVIPA+AA Sbjct: 4 SAFPMASTVVDSILFRDAFGTAKMRAVFSDHALIQRYIDVEVALAKAEARVGVIPADAAE 63 Query: 62 EIAKRTDVAALDFDLLRQETDVVGYPILPLVHQMAKQCGEAGRYVHWGATTQDIMDTAVV 121 IA+ + + +DFD +R+ETD+VGYPILPLVHQ+ + CG+AGRYVHWGATTQDIMDTAV Sbjct: 64 VIARESTIERIDFDHMREETDIVGYPILPLVHQLVEMCGDAGRYVHWGATTQDIMDTAVA 123 Query: 122 LQLRDGLKIIEDDIPALRGILADLSKTYRDTPMAGRTHLQQALPVTFGYKTAIWLAAFDR 181 LQ+RD L IEDDI LR IL DL+K +RDTPMAGRTHLQQALPVTFGYK AIWLA FDR Sbjct: 124 LQVRDALDSIEDDIRELRAILTDLAKKHRDTPMAGRTHLQQALPVTFGYKVAIWLAMFDR 183 Query: 182 HAARLVELKPRVLVGQFAGAAGTLASLGDKGFEVQQALCEELGLGVPVSTWHVARDGLAE 241 H R+ +++ RV V +FAGAAGTLASLGDKGFEVQ+AL EEL LG+P +TWHVARDG AE Sbjct: 184 HQERMAQMRERVAVVEFAGAAGTLASLGDKGFEVQKALAEELKLGLPATTWHVARDGFAE 243 Query: 242 AVNFLALVTGTLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAAA 301 AVN LALVTG+LGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAAA Sbjct: 244 AVNLLALVTGSLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAAA 303 Query: 302 KAVRQHAGLMLDAMVQDFERATGPWHAEWIAIPESFVLTAGALHQARFALGGLIVDEQRM 361 KAVRQHAGLM+DAM+QDFERATGPWHAEWIAIPESF+LTAGALHQA+FALGGLIVDE RM Sbjct: 304 KAVRQHAGLMIDAMIQDFERATGPWHAEWIAIPESFILTAGALHQAKFALGGLIVDEARM 363 Query: 362 ADNLDISRGLIVAEAVMMGLAPAIGRQEAHDVVYDACRVANDKGLTLAEALAADDRVASR 421 NL IS+GLIVAEAVMMG+AP GRQ+AHD+VYDACR AN+ G TLAEALAA V Sbjct: 364 KHNLGISKGLIVAEAVMMGMAPHTGRQQAHDIVYDACRTANEHGGTLAEALAALPEVTKH 423 Query: 422 VDRATIDRLTAPKNYLGLAPEMVDRVLA 449 DRA IDR+T P NYLGLAP+MVDR +A Sbjct: 424 FDRAAIDRMTDPANYLGLAPQMVDRAIA 451 >ref|YP_004681789.1| GntR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80557.1| 3-carboxy-cis,cis-muconate cycloisomerase PcaB [Cupriavidus necator N-1] Length = 462 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/453 (77%), Positives = 392/453 (86%), Gaps = 4/453 (0%) Query: 5 PTSTTVLDSVLFRDAFGTREMREVFSDLRLIERYAEVEVALAKAEARCGVIPAEAAAEIA 64 PT++TV+DS+LFRDAFGT +MR++FSD+ LI+RY +VEV LA+AEAR GVIPAEAA IA Sbjct: 7 PTASTVVDSILFRDAFGTAKMRQIFSDVALIQRYIDVEVGLARAEARVGVIPAEAAEVIA 66 Query: 65 KRTDVAALDFDLLRQETDVVGYPILPLVHQMAKQCGEAGRYVHWGATTQDIMDTAVVLQL 124 + + + +DFD +R+ETD+VGYPILPLVHQ+ CGEAGRYVHWGATTQDIMDTAV LQ+ Sbjct: 67 RESRLERIDFDHMREETDIVGYPILPLVHQLVAMCGEAGRYVHWGATTQDIMDTAVALQV 126 Query: 125 RDGLKIIEDDIPALRGILADLSKTYRDTPMAGRTHLQQALPVTFGYKTAIWLAAFDRHAA 184 RD L I+ DI LRGILADL+ +RDTPMAGRTHLQQALPVTFGYK AIWLA FDRH Sbjct: 127 RDALDSIDADIRELRGILADLAVKHRDTPMAGRTHLQQALPVTFGYKVAIWLAMFDRHQQ 186 Query: 185 RLVELKPRVLVGQFAGAAGTLASLG----DKGFEVQQALCEELGLGVPVSTWHVARDGLA 240 RL EL+PRV V +FAGAAGTLASLG +KGF VQ+AL EELGLGVP +TWHVARDG A Sbjct: 187 RLAELRPRVAVVEFAGAAGTLASLGGQGDNKGFAVQEALAEELGLGVPATTWHVARDGFA 246 Query: 241 EAVNFLALVTGTLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAA 300 EAVN LAL+TG+LGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAA Sbjct: 247 EAVNLLALITGSLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAA 306 Query: 301 AKAVRQHAGLMLDAMVQDFERATGPWHAEWIAIPESFVLTAGALHQARFALGGLIVDEQR 360 +KAVRQHAGLM+DAMVQDFERATGPWHAEWIAIPESF+L+AGALHQARFALGGLIVDE R Sbjct: 307 SKAVRQHAGLMVDAMVQDFERATGPWHAEWIAIPESFILSAGALHQARFALGGLIVDEAR 366 Query: 361 MADNLDISRGLIVAEAVMMGLAPAIGRQEAHDVVYDACRVANDKGLTLAEALAADDRVAS 420 M NL IS+GLIVAEAVMMG+AP IGRQ+AHDVVYDACR N+ G TLA+ALAA V Sbjct: 367 MKHNLGISKGLIVAEAVMMGMAPHIGRQQAHDVVYDACRTVNEHGGTLADALAALPEVTQ 426 Query: 421 RVDRATIDRLTAPKNYLGLAPEMVDRVLATVKR 453 DRATIDR+T P NYLGLAP+MVDR +A K+ Sbjct: 427 HFDRATIDRMTDPANYLGLAPQMVDRAIALSKQ 459 >ref|YP_999314.1| fumarate lyase [Verminephrobacter eiseniae EF01-2] gb|ABM60296.1| 3-carboxy-cis,cis-muconate cycloisomerase [Verminephrobacter eiseniae EF01-2] Length = 458 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/448 (77%), Positives = 388/448 (86%) Query: 2 SAFPTSTTVLDSVLFRDAFGTREMREVFSDLRLIERYAEVEVALAKAEARCGVIPAEAAA 61 ++ P ++TV+DS+LFRDAFGT +MR +FSD LI+RY + EVALA+AEA+ GVIPA+AA Sbjct: 4 ASIPMASTVVDSILFRDAFGTAQMRALFSDHALIQRYIDAEVALARAEAKAGVIPADAAE 63 Query: 62 EIAKRTDVAALDFDLLRQETDVVGYPILPLVHQMAKQCGEAGRYVHWGATTQDIMDTAVV 121 IA+ + + +DFD +R ETD+VGYPILPLVHQ+ CG+AGRYVHWGATTQDIMDTAV Sbjct: 64 TIARESRIGRIDFDHMRHETDIVGYPILPLVHQLVAMCGDAGRYVHWGATTQDIMDTAVA 123 Query: 122 LQLRDGLKIIEDDIPALRGILADLSKTYRDTPMAGRTHLQQALPVTFGYKTAIWLAAFDR 181 LQ+RD L +I+ I LRGILADL++ +RDTPMAGRTHLQQALPVTFGYK AIWLA FDR Sbjct: 124 LQVRDALDVIDAQIRDLRGILADLARKHRDTPMAGRTHLQQALPVTFGYKAAIWLAMFDR 183 Query: 182 HAARLVELKPRVLVGQFAGAAGTLASLGDKGFEVQQALCEELGLGVPVSTWHVARDGLAE 241 H RL EL+PRV V +FAGAAGTLASLGDKGFEVQ A+ EEL LGVP +TWHVARDG AE Sbjct: 184 HQQRLAELRPRVAVVEFAGAAGTLASLGDKGFEVQAAMAEELKLGVPATTWHVARDGFAE 243 Query: 242 AVNFLALVTGTLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAAA 301 AVN LALVTG+LGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAA+ Sbjct: 244 AVNLLALVTGSLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAAS 303 Query: 302 KAVRQHAGLMLDAMVQDFERATGPWHAEWIAIPESFVLTAGALHQARFALGGLIVDEQRM 361 KAVRQHAGLM+DAMVQDFERATGPWHAEWIAIPESF+LTAGALHQARFALGGLIVD RM Sbjct: 304 KAVRQHAGLMVDAMVQDFERATGPWHAEWIAIPESFILTAGALHQARFALGGLIVDAPRM 363 Query: 362 ADNLDISRGLIVAEAVMMGLAPAIGRQEAHDVVYDACRVANDKGLTLAEALAADDRVASR 421 NL ISRGLIVAEAVMMG+AP IGRQ+AHDVVYDACR N+KG TLAEALAA V + Sbjct: 364 KHNLGISRGLIVAEAVMMGMAPHIGRQQAHDVVYDACRTVNEKGGTLAEALAALPEVTAH 423 Query: 422 VDRATIDRLTAPKNYLGLAPEMVDRVLA 449 DRA I+RLT P NYLGLAP+MVDR +A Sbjct: 424 FDRAAIERLTDPVNYLGLAPQMVDRAIA 451 >ref|YP_002496092.1| 3-carboxy-cis,cis-muconate cycloisomerase [Methylobacterium nodulans ORS 2060] gb|ACL55789.1| 3-carboxy-cis,cis-muconate cycloisomerase [Methylobacterium nodulans ORS 2060] Length = 457 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/449 (79%), Positives = 389/449 (86%) Query: 5 PTSTTVLDSVLFRDAFGTREMREVFSDLRLIERYAEVEVALAKAEARCGVIPAEAAAEIA 64 P++TTV+DS+LFRDAFGT MR +FSD L++RY EVEVALAKAEA CGVIPAEAAA+IA Sbjct: 7 PSATTVIDSLLFRDAFGTPAMRAIFSDHALVQRYIEVEVALAKAEAACGVIPAEAAAQIA 66 Query: 65 KRTDVAALDFDLLRQETDVVGYPILPLVHQMAKQCGEAGRYVHWGATTQDIMDTAVVLQL 124 R + ALDFDLLR ETD VGYPILPLVHQ+ KQCGEAGRYVHWGATTQDIMDTA VLQ+ Sbjct: 67 ARCNFEALDFDLLRHETDNVGYPILPLVHQLVKQCGEAGRYVHWGATTQDIMDTANVLQV 126 Query: 125 RDGLKIIEDDIPALRGILADLSKTYRDTPMAGRTHLQQALPVTFGYKTAIWLAAFDRHAA 184 R GL ++ D+ ALR ILADLS+ +RDTPMAGRTHLQQALPVTFGYKTAIWLAA DRHA Sbjct: 127 RAGLDLVAADVDALRTILADLSRRHRDTPMAGRTHLQQALPVTFGYKTAIWLAALDRHAE 186 Query: 185 RLVELKPRVLVGQFAGAAGTLASLGDKGFEVQQALCEELGLGVPVSTWHVARDGLAEAVN 244 RL +++PRVLVG FAGAAGTLASLGD G VQ+ALC ELGLGVPVSTWHVARDG AE VN Sbjct: 187 RLAQVRPRVLVGSFAGAAGTLASLGDHGLAVQEALCRELGLGVPVSTWHVARDGFAEVVN 246 Query: 245 FLALVTGTLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELMLAAAKAV 304 LAL+TG+LGKIALD+MIMASTEFAEVYEPFV GRGASSTMPQKRNPISSELMLAA+K V Sbjct: 247 LLALITGSLGKIALDVMIMASTEFAEVYEPFVTGRGASSTMPQKRNPISSELMLAASKGV 306 Query: 305 RQHAGLMLDAMVQDFERATGPWHAEWIAIPESFVLTAGALHQARFALGGLIVDEQRMADN 364 RQ AGLMLDAMVQDFERATGPWHAEW+AIPESFVLTAGALHQA+FALGGLIVDE +M N Sbjct: 307 RQQAGLMLDAMVQDFERATGPWHAEWMAIPESFVLTAGALHQAKFALGGLIVDEAQMRRN 366 Query: 365 LDISRGLIVAEAVMMGLAPAIGRQEAHDVVYDACRVANDKGLTLAEALAADDRVASRVDR 424 L ISRGLIVAEAVMM LAP GRQ+AHD+VY ACRV N++G TLAEALA V DR Sbjct: 367 LGISRGLIVAEAVMMALAPHTGRQQAHDLVYAACRVVNEQGGTLAEALAGVPEVTRHFDR 426 Query: 425 ATIDRLTAPKNYLGLAPEMVDRVLATVKR 453 A IDRLT P NYLG AP+MVDRVLA+ R Sbjct: 427 AEIDRLTDPANYLGSAPQMVDRVLASAPR 455