BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0015.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_586591.1| extra-cytoplasmic solute receptor protein [Cupr... 266 5e-69 ref|NP_773701.1| hypothetical protein blr7061 [Bradyrhizobium ja... 253 2e-65 ref|YP_571023.1| hypothetical protein RPD_3901 [Rhodopseudomonas... 253 4e-65 ref|YP_298714.1| hypothetical protein Reut_B4520 [Ralstonia eutr... 252 5e-65 ref|YP_727047.1| extra-cytoplasmic solute receptor [Ralstonia eu... 250 2e-64 >ref|YP_586591.1| extra-cytoplasmic solute receptor protein [Cupriavidus metallidurans CH34] gb|ABF11322.1| extra-cytoplasmic solute receptor (Bug) [Cupriavidus metallidurans CH34] Length = 327 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 133/304 (43%), Positives = 193/304 (63%), Gaps = 2/304 (0%) Query: 18 LPAFAADDFPQRPLKIIVPFPAGAGPDNVARLVGQHLQDAFGQTVLIENRAGALGSIGAQ 77 LPA A D +P RP++++VPF AG+G D VAR+ + L DA Q V+++NR GA GSI A+ Sbjct: 24 LPASANDAYPSRPIRLVVPFAAGSGTDAVARITAKELGDALNQNVIVDNRPGANGSIAAE 83 Query: 78 EVARSAPDGYTLLMGTNTTHASNVATLKSLPYDPVKDFAPVIRTTTTAMVLLVNPKLAAR 137 VA++APDGYTL M TNTTH++N + +K LPYDP+KDF PV R +L++NPKL + Sbjct: 84 IVAQAAPDGYTLFMTTNTTHSANPSLMKKLPYDPIKDFTPVARMGNLPFMLVINPKLPVK 143 Query: 138 DLPQFLAYAKANPNLTAGYGSGASQISIAQLQSRGGLSLIAASYRGVPQAMTDVMAGVID 197 + + +AYAK++P ++ G+ +S A L + L+ Y+ P AMTDV+AG + Sbjct: 144 TVGELIAYAKSHPGMSYASGNSTGIVSGATLARMAQIDLLHVPYKSTPPAMTDVIAGQVP 203 Query: 198 LTFGDFSVAIPQMEGGTLRGIAVTSAARNELTPGLPALAEA--MPGFEATIWYGLFAPAG 255 + F D + I ++ G +R +AVT+A R+ L P LP + +A + GF+ T W G+FAPA Sbjct: 204 MMFVDVAAGIANVKAGRMRALAVTTAQRSRLLPDLPPIGDAPELKGFDITSWNGVFAPAK 263 Query: 256 TPEPVVSKLYAECAKYLAMPETRKKLADVGVMVAPLAPAEFGAFVRSEVVRWSAEVKAAG 315 TP+P+V +L E +K A E K +G P +F FV SE+V+W+ VK AG Sbjct: 264 TPQPIVDRLNRELSKIAASKEVAPKFEALGFEAFGQTPQQFAGFVGSELVKWNKLVKDAG 323 Query: 316 IQPQ 319 IQP+ Sbjct: 324 IQPE 327 >ref|NP_773701.1| hypothetical protein blr7061 [Bradyrhizobium japonicum USDA 110] dbj|BAC52326.1| blr7061 [Bradyrhizobium japonicum USDA 110] Length = 325 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 186/299 (62%), Gaps = 2/299 (0%) Query: 23 ADDFPQRPLKIIVPFPAGAGPDNVARLVGQHLQDAFGQTVLIENRAGALGSIGAQEVARS 82 AD++P R + +++PF AG+G D RL+ QHL A G ++IEN+AGA G I A VAR+ Sbjct: 27 ADNYPSRNITLVLPFAAGSGTDTTTRLISQHLSQALGVGIVIENKAGANGMIAATFVARA 86 Query: 83 APDGYTLLMGTNTTHASNVATLKSLPYDPVKDFAPVIRTTTTAMVLLVNPKLAARDLPQF 142 APDGYTLL+ TNTTH++N LKSL YDPVKDF P+ RT +L+++P++ A+ + + Sbjct: 87 APDGYTLLVTTNTTHSANPYLLKSLTYDPVKDFTPIARTGDLPFMLVIHPEVPAKTVGEL 146 Query: 143 LAYAKANP-NLTAGYGSGASQISIAQLQSRGGLSLIAASYRGVPQAMTDVMAGVIDLTFG 201 +AY KANP L+ GS ++ +S A GL L+ Y+ P A+ DVM G + + F Sbjct: 147 VAYGKANPGKLSYASGSSSAIVSGATFAHNAGLDLLHVPYKSSPPALNDVMGGRVSMMFV 206 Query: 202 DFSVAIPQMEGGTLRGIAVTSAARNELTPGLPALAEA-MPGFEATIWYGLFAPAGTPEPV 260 D +P + G LR +AVT+ R+ L P LP++ EA +P F+ + W G F PAG P+ + Sbjct: 207 DILTGLPHVNGNALRALAVTTKDRSPLVPNLPSMQEAGVPDFDISSWQGYFGPAGMPKEI 266 Query: 261 VSKLYAECAKYLAMPETRKKLADVGVMVAPLAPAEFGAFVRSEVVRWSAEVKAAGIQPQ 319 V++L AE K + PE + +LA +G+ P + G FV ++V W ++ AGI+ Q Sbjct: 267 VTRLNAEIRKIVEKPEIKAQLATLGMDAFSGTPEQLGTFVNEQLVLWEKLIREAGIEKQ 325 >ref|YP_571023.1| hypothetical protein RPD_3901 [Rhodopseudomonas palustris BisB5] gb|ABE41122.1| Uncharacterized protein UPF0065 [Rhodopseudomonas palustris BisB5] Length = 325 Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 131/296 (44%), Positives = 186/296 (62%), Gaps = 2/296 (0%) Query: 26 FPQRPLKIIVPFPAGAGPDNVARLVGQHLQDAFGQTVLIENRAGALGSIGAQEVARSAPD 85 +P R + +++PF AG+G D R++ Q L A G +++IEN+AGA G I A VAR+ PD Sbjct: 30 YPNRNITLVLPFAAGSGTDTTTRIISQKLGQALGVSMVIENKAGANGMIAAAYVARAQPD 89 Query: 86 GYTLLMGTNTTHASNVATLKSLPYDPVKDFAPVIRTTTTAMVLLVNPKLAARDLPQFLAY 145 GYTL + TNTTH++N LK+L YDPVKDFAPV RT +L+V+P + A+ + + +AY Sbjct: 90 GYTLFVTTNTTHSANPYLLKNLTYDPVKDFAPVARTGDLPFMLVVHPDVPAKTVAELVAY 149 Query: 146 AKANP-NLTAGYGSGASQISIAQLQSRGGLSLIAASYRGVPQAMTDVMAGVIDLTFGDFS 204 AKANP LT GS ++ +S A + G+ L+ Y+ P AM DV+ G I + F D Sbjct: 150 AKANPGKLTYASGSSSAIVSGATFARKAGIDLLHVPYKSSPPAMNDVIGGRITMMFTDVL 209 Query: 205 VAIPQMEGGTLRGIAVTSAARNELTPGLPALAEA-MPGFEATIWYGLFAPAGTPEPVVSK 263 +P + GG LR +AVT+ R+ L P LP++ EA +P F+ T W G FAPAGTP+ VV++ Sbjct: 210 TGLPHVNGGALRALAVTTKDRSPLVPDLPSMQEAGVPDFDITSWQGYFAPAGTPKEVVAR 269 Query: 264 LYAECAKYLAMPETRKKLADVGVMVAPLAPAEFGAFVRSEVVRWSAEVKAAGIQPQ 319 L E K + PET+ KLA +G+ P + G FV ++V W V+ AGI+ Q Sbjct: 270 LNTEIRKIVEDPETKAKLATLGMEAFSGTPEQLGKFVDDQLVLWERLVREAGIEKQ 325 >ref|YP_298714.1| hypothetical protein Reut_B4520 [Ralstonia eutropha JMP134] gb|AAZ63870.1| Uncharacterized protein UPF0065 [Ralstonia eutropha JMP134] Length = 326 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 132/305 (43%), Positives = 188/305 (61%), Gaps = 2/305 (0%) Query: 17 VLPAFAADDFPQRPLKIIVPFPAGAGPDNVARLVGQHLQDAFGQTVLIENRAGALGSIGA 76 + PA AAD +P +PL+++VPF AG+G D VARL ++L ++ Q V+++NR GA G+I A Sbjct: 22 ISPAGAADPYPTKPLRLVVPFAAGSGTDAVARLTAKYLGESLKQPVVVDNRPGANGTIAA 81 Query: 77 QEVARSAPDGYTLLMGTNTTHASNVATLKSLPYDPVKDFAPVIRTTTTAMVLLVNPKLAA 136 + VA++ DGYTL M TNTTH++N + +K L YDPVKDF PV R +L+V+P L Sbjct: 82 EFVAKAPADGYTLFMTTNTTHSANPSLMKQLRYDPVKDFTPVSRMGNLPFMLVVSPTLPV 141 Query: 137 RDLPQFLAYAKANPNLTAGYGSGASQISIAQLQSRGGLSLIAASYRGVPQAMTDVMAGVI 196 + LP+F+AYAKA+P ++ G+ ++ A + GL ++ Y+ P AMTDV+ G + Sbjct: 142 KTLPEFVAYAKAHPGMSYASGNSTGIVAGATMSKMAGLKMLHVPYKSTPPAMTDVIGGQV 201 Query: 197 DLTFGDFSVAIPQMEGGTLRGIAVTSAARNELTPGLPALAE--AMPGFEATIWYGLFAPA 254 + F DF+ I ++ G LR +AVT+A R+ L P LP LA GF+ T W G+FAPA Sbjct: 202 QVMFVDFAAGIANVKAGKLRALAVTTAQRSALLPDLPPLASEPEFKGFDITSWNGVFAPA 261 Query: 255 GTPEPVVSKLYAECAKYLAMPETRKKLADVGVMVAPLAPAEFGAFVRSEVVRWSAEVKAA 314 GTP PVV L E + + + G PAE G FV +E+ +WS VK A Sbjct: 262 GTPAPVVEHLNHELVAIASNKQYAPQFHAFGFEPFGSTPAELGQFVTAELQKWSRLVKDA 321 Query: 315 GIQPQ 319 GIQP+ Sbjct: 322 GIQPE 326 >ref|YP_727047.1| extra-cytoplasmic solute receptor [Ralstonia eutropha H16] emb|CAJ93679.1| probable extra-cytoplasmic solute receptor [Ralstonia eutropha H16] Length = 325 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/298 (43%), Positives = 182/298 (61%), Gaps = 2/298 (0%) Query: 24 DDFPQRPLKIIVPFPAGAGPDNVARLVGQHLQDAFGQTVLIENRAGALGSIGAQEVARSA 83 D+FP RPL+++VPF AG+G D VARL ++L +A Q V+++N+ GA G+I A+ VA++ Sbjct: 28 DEFPSRPLRLVVPFAAGSGTDAVARLTAKYLGEALQQPVVVDNKPGANGTIAAEFVAKAP 87 Query: 84 PDGYTLLMGTNTTHASNVATLKSLPYDPVKDFAPVIRTTTTAMVLLVNPKLAARDLPQFL 143 DGYTL M TNTTH++N + +K L YDPVKDF PV R +L+VNP L + L +F+ Sbjct: 88 ADGYTLFMTTNTTHSANPSLMKQLRYDPVKDFTPVSRMGNLPFMLVVNPALPVKTLREFI 147 Query: 144 AYAKANPNLTAGYGSGASQISIAQLQSRGGLSLIAASYRGVPQAMTDVMAGVIDLTFGDF 203 YA+A+P L+ G+ +S A L GL+++ Y+ P AMTDVM G + F DF Sbjct: 148 DYARAHPGLSYASGNSTGIVSGATLSKMAGLNMLHVPYKSTPPAMTDVMGGQVQAMFVDF 207 Query: 204 SVAIPQMEGGTLRGIAVTSAARNELTPGLPALAEA--MPGFEATIWYGLFAPAGTPEPVV 261 + I + G LR +AVT+A R+EL P LP LA + GF+ T W G+FAPAG P PVV Sbjct: 208 AAGIANVRAGKLRALAVTTAQRSELLPDLPPLASVPELKGFDVTSWNGVFAPAGVPAPVV 267 Query: 262 SKLYAECAKYLAMPETRKKLADVGVMVAPLAPAEFGAFVRSEVVRWSAEVKAAGIQPQ 319 +L E + + +G PAE FV +E+ +WS VK AGIQP+ Sbjct: 268 QRLNRELVAIATSKQHAPRFHALGFEPFGSTPAELSQFVVAELQKWSRLVKDAGIQPE 325