BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0073.0014.p         (157 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS58044.1| Pbp [Bradyrhizobium japonicum]                         130   5e-29
ref|NP_767962.1| hypothetical protein bll1322 [Bradyrhizobium ja...   130   6e-29
ref|ZP_08628455.1| ABC-type nitrate/sulfonate/bicarbonate transp...   122   2e-26
ref|ZP_01045326.1| ABC-type nitrate/sulfonate/bicarbonate transp...   122   2e-26
ref|YP_001237117.1| hypothetical protein BBta_0955 [Bradyrhizobi...   122   2e-26

>gb|AAS58044.1| Pbp [Bradyrhizobium japonicum]
          Length = 426

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query: 1   VREPMLSAGQVDAVTGFSYLSAINLRDRGVPADDLAVLRFADYGCEAYGFAVIVSPRLAA 60
           VREP+LSAGQVDAV GFSYLSA+NLRDRGVP DDL VLR+ADYGCEAYGFAV+ +P  AA
Sbjct: 257 VREPILSAGQVDAVAGFSYLSAVNLRDRGVPGDDLVVLRYADYGCEAYGFAVVANPAFAA 316

Query: 61  AKPDAVKGFVRAAIGGI 77
           AKPDAV+GFVRA I GI
Sbjct: 317 AKPDAVRGFVRALIAGI 333


>ref|NP_767962.1| hypothetical protein bll1322 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46587.1| bll1322 [Bradyrhizobium japonicum USDA 110]
          Length = 409

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query: 1   VREPMLSAGQVDAVTGFSYLSAINLRDRGVPADDLAVLRFADYGCEAYGFAVIVSPRLAA 60
           VREP+LSAGQVDAV GFSYLSA+NLRDRGVP DDL VLR+ADYGCEAYGFAV+ +P  AA
Sbjct: 240 VREPILSAGQVDAVAGFSYLSAVNLRDRGVPGDDLVVLRYADYGCEAYGFAVVANPAFAA 299

Query: 61  AKPDAVKGFVRAAIGGI 77
           AKPDAV+GFVRA I GI
Sbjct: 300 AKPDAVRGFVRALIAGI 316


>ref|ZP_08628455.1| ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic
           component [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08779.1| ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic
           component [Bradyrhizobiaceae bacterium SG-6C]
          Length = 295

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 68/77 (88%)

Query: 1   VREPMLSAGQVDAVTGFSYLSAINLRDRGVPADDLAVLRFADYGCEAYGFAVIVSPRLAA 60
           VREPMLSAGQ+DAVTGFS+LSAINLRDRGVPA+DL VLRF+D+G E YG A+IV+P+ A+
Sbjct: 126 VREPMLSAGQLDAVTGFSFLSAINLRDRGVPANDLVVLRFSDFGSEVYGHALIVNPKFAS 185

Query: 61  AKPDAVKGFVRAAIGGI 77
           A P+AVK F+RA + G+
Sbjct: 186 ANPEAVKAFIRATVAGV 202


>ref|ZP_01045326.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
           periplasmic component [Nitrobacter sp. Nb-311A]
 gb|EAQ36654.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
           periplasmic component [Nitrobacter sp. Nb-311A]
          Length = 339

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 69/77 (89%)

Query: 1   VREPMLSAGQVDAVTGFSYLSAINLRDRGVPADDLAVLRFADYGCEAYGFAVIVSPRLAA 60
           VREPMLSAGQ+DA++G SYLSAI+LR+RG+PADD+AVLRFADYGC AYG A+IV+P  AA
Sbjct: 167 VREPMLSAGQLDAISGLSYLSAIDLRNRGIPADDIAVLRFADYGCAAYGKALIVNPEFAA 226

Query: 61  AKPDAVKGFVRAAIGGI 77
            KP+AVKGFVRA I G+
Sbjct: 227 DKPEAVKGFVRAVIAGL 243


>ref|YP_001237117.1| hypothetical protein BBta_0955 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33211.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 349

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 68/77 (88%)

Query: 1   VREPMLSAGQVDAVTGFSYLSAINLRDRGVPADDLAVLRFADYGCEAYGFAVIVSPRLAA 60
           VREP+LSAGQVDAV+GFSYLSAINLRDRGVPA DLAVLRFADYGCEAYG AVIV+P  AA
Sbjct: 180 VREPILSAGQVDAVSGFSYLSAINLRDRGVPAADLAVLRFADYGCEAYGHAVIVNPGFAA 239

Query: 61  AKPDAVKGFVRAAIGGI 77
            +P+AVKG +RA   G+
Sbjct: 240 RQPEAVKGMLRALTEGL 256