BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0010.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769159.1| hypothetical protein blr2519 [Bradyrhizobium ja... 722 0.0 ref|YP_001990240.1| radical SAM domain-containing protein [Rhodo... 700 0.0 ref|NP_946384.1| radical SAM family protein [Rhodopseudomonas pa... 699 0.0 ref|YP_484701.1| radical SAM family protein [Rhodopseudomonas pa... 697 0.0 ref|YP_004107555.1| Radical SAM domain-containing protein [Rhodo... 694 0.0 >ref|NP_769159.1| hypothetical protein blr2519 [Bradyrhizobium japonicum USDA 110] dbj|BAC47784.1| blr2519 [Bradyrhizobium japonicum USDA 110] Length = 387 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/392 (89%), Positives = 373/392 (95%), Gaps = 5/392 (1%) Query: 1 MSRASSHALKHPPVTAPSDNPAGAPSHIPAPFPELAVAIERERRRGRGAQSNASGRYEAE 60 MS ASSHALKHPPVTAPS+ PAGAPS FPELAVAI+++RRRGRGAQSNASGRYEAE Sbjct: 1 MSPASSHALKHPPVTAPSE-PAGAPSD----FPELAVAIDKQRRRGRGAQSNASGRYEAE 55 Query: 61 ARVAFDDGWQSLEDLPPFTTSVALDTSRKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA 120 ARVAFDDGWQSLE+LPPF T+VA+DTSRKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA Sbjct: 56 ARVAFDDGWQSLEELPPFKTTVAVDTSRKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA 115 Query: 121 RPTHAYLGLSPGLDFESKLFAKPDAPALLEKELAAPDYEARMIAIGTNTDPYQPIERDRK 180 RPTHAYLGLSPGLDFESKLF KP+APALLEKELAA YE RMIAIGTNTDPYQPIER+RK Sbjct: 116 RPTHAYLGLSPGLDFESKLFVKPEAPALLEKELAAAGYEPRMIAIGTNTDPYQPIERERK 175 Query: 181 IMRGILEVLERAGHPVGIVTKSALVVRDIDILARMAKRNLAKVALSVTTLDPKLARTMEP 240 IMRGILEVLERAGHPVGIVTKSALV RDIDIL+RMAKRNLAKVA+SVT+LDPKLARTMEP Sbjct: 176 IMRGILEVLERAGHPVGIVTKSALVARDIDILSRMAKRNLAKVAISVTSLDPKLARTMEP 235 Query: 241 RASTPPKRLEAIKRLADAGIPTTVMVAPVIPALNDSEIERILDAAAHAGAREASYVLLRL 300 RASTPPKRLEA+K+L+DAGIPTTVMVAPVIPALNDSEIERILDAAAHAG +EASYVLLRL Sbjct: 236 RASTPPKRLEALKQLSDAGIPTTVMVAPVIPALNDSEIERILDAAAHAGVKEASYVLLRL 295 Query: 301 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPMAWMIGRRFEI 360 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYD++WG RMKGTGPMAW IGRRFEI Sbjct: 296 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDAKWGERMKGTGPMAWTIGRRFEI 355 Query: 361 ACEKLGLNKRRTKLTTDHFAKPKRNGQQLSLF 392 AC++LGLNKRR KLT DHFA+PKRNG QLSLF Sbjct: 356 ACDRLGLNKRRAKLTMDHFARPKRNGDQLSLF 387 >ref|YP_001990240.1| radical SAM domain-containing protein [Rhodopseudomonas palustris TIE-1] gb|ACE99764.1| Radical SAM domain protein [Rhodopseudomonas palustris TIE-1] Length = 386 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/392 (87%), Positives = 366/392 (93%), Gaps = 6/392 (1%) Query: 1 MSRASSHALKHPPVTAPSDNPAGAPSHIPAPFPELAVAIERERRRGRGAQSNASGRYEAE 60 MSRAS +ALK PPVTAPS+ P GA S PFP + VA++ +RRRGRGAQSNASGRYEAE Sbjct: 1 MSRAS-NALKRPPVTAPSE-PVGASS----PFPAIEVAVDEQRRRGRGAQSNASGRYEAE 54 Query: 61 ARVAFDDGWQSLEDLPPFTTSVALDTSRKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA 120 AR AFDDGW+SLEDLPPF T+V LDT+RKVITRN+SPDIGFDRSINPYRGCEHGCVYCFA Sbjct: 55 ARTAFDDGWESLEDLPPFKTTVVLDTARKVITRNESPDIGFDRSINPYRGCEHGCVYCFA 114 Query: 121 RPTHAYLGLSPGLDFESKLFAKPDAPALLEKELAAPDYEARMIAIGTNTDPYQPIERDRK 180 RPTHAYLGLSPGLDFES+LFAKPDAPALLEKELAAP+YE RMIAIGTNTDPYQPIER+RK Sbjct: 115 RPTHAYLGLSPGLDFESRLFAKPDAPALLEKELAAPEYEPRMIAIGTNTDPYQPIERERK 174 Query: 181 IMRGILEVLERAGHPVGIVTKSALVVRDIDILARMAKRNLAKVALSVTTLDPKLARTMEP 240 IMRGILEVLE++GHPVGIVTKSALVVRDIDILARMAKR LAKVALSVT+LDPKLAR+MEP Sbjct: 175 IMRGILEVLEKSGHPVGIVTKSALVVRDIDILARMAKRQLAKVALSVTSLDPKLARSMEP 234 Query: 241 RASTPPKRLEAIKRLADAGIPTTVMVAPVIPALNDSEIERILDAAAHAGAREASYVLLRL 300 RASTP KRLEA+K LADAGIPTTVMVAPVIPALND EIERILDAAAHAG +EASYVLLRL Sbjct: 235 RASTPAKRLEALKLLADAGIPTTVMVAPVIPALNDMEIERILDAAAHAGVKEASYVLLRL 294 Query: 301 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPMAWMIGRRFEI 360 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGP+AWMIGRRFE Sbjct: 295 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFET 354 Query: 361 ACEKLGLNKRRTKLTTDHFAKPKRNGQQLSLF 392 AC +LGLNKRR+KLT DHF KP++ GQQLSLF Sbjct: 355 ACTRLGLNKRRSKLTLDHFEKPEKAGQQLSLF 386 >ref|NP_946384.1| radical SAM family protein [Rhodopseudomonas palustris CGA009] emb|CAE26476.1| DUF85:Elongator protein 3/MiaB/NifB [Rhodopseudomonas palustris CGA009] Length = 386 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/392 (87%), Positives = 365/392 (93%), Gaps = 6/392 (1%) Query: 1 MSRASSHALKHPPVTAPSDNPAGAPSHIPAPFPELAVAIERERRRGRGAQSNASGRYEAE 60 MSRAS +ALK PPVTAPS+ P GA S PFP + VA++ +RRRGRGAQSN SGRYEAE Sbjct: 1 MSRAS-NALKRPPVTAPSE-PVGASS----PFPAIEVAVDEQRRRGRGAQSNVSGRYEAE 54 Query: 61 ARVAFDDGWQSLEDLPPFTTSVALDTSRKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA 120 AR AFDDGW+SLEDLPPF T+VALDT+RKVITRN+SPDIGFDRSINPYRGCEHGCVYCFA Sbjct: 55 ARTAFDDGWESLEDLPPFKTTVALDTARKVITRNESPDIGFDRSINPYRGCEHGCVYCFA 114 Query: 121 RPTHAYLGLSPGLDFESKLFAKPDAPALLEKELAAPDYEARMIAIGTNTDPYQPIERDRK 180 RPTHAYLGLSPGLDFES+LFAKPDAPALLEKELAAP+YE RMIAIGTNTDPYQPIER+RK Sbjct: 115 RPTHAYLGLSPGLDFESRLFAKPDAPALLEKELAAPEYEPRMIAIGTNTDPYQPIERERK 174 Query: 181 IMRGILEVLERAGHPVGIVTKSALVVRDIDILARMAKRNLAKVALSVTTLDPKLARTMEP 240 IMRGILEVLE+ GHPVGIVTKSALVVRDIDILARMAKR LAKVALSVT+LDPKLAR+MEP Sbjct: 175 IMRGILEVLEKTGHPVGIVTKSALVVRDIDILARMAKRQLAKVALSVTSLDPKLARSMEP 234 Query: 241 RASTPPKRLEAIKRLADAGIPTTVMVAPVIPALNDSEIERILDAAAHAGAREASYVLLRL 300 RASTP KRLEA+K LADAGIPTTVMVAPVIPALND EIERILDAAAHAG +EASYVLLRL Sbjct: 235 RASTPAKRLEALKLLADAGIPTTVMVAPVIPALNDMEIERILDAAAHAGVKEASYVLLRL 294 Query: 301 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPMAWMIGRRFEI 360 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGP+AWMIGRRFE Sbjct: 295 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFET 354 Query: 361 ACEKLGLNKRRTKLTTDHFAKPKRNGQQLSLF 392 AC +LGLNKRR+KLT DHF KP++ GQQLSLF Sbjct: 355 ACTRLGLNKRRSKLTLDHFEKPEKAGQQLSLF 386 >ref|YP_484701.1| radical SAM family protein [Rhodopseudomonas palustris HaA2] gb|ABD05790.1| Radical SAM [Rhodopseudomonas palustris HaA2] Length = 386 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/392 (86%), Positives = 366/392 (93%), Gaps = 6/392 (1%) Query: 1 MSRASSHALKHPPVTAPSDNPAGAPSHIPAPFPELAVAIERERRRGRGAQSNASGRYEAE 60 MSRAS +ALK PPVTAPS+ P GA S PFPE+ +AI+++RRRGRGAQSN SGRYEAE Sbjct: 1 MSRAS-NALKRPPVTAPSE-PVGAIS----PFPEIEIAIDKQRRRGRGAQSNESGRYEAE 54 Query: 61 ARVAFDDGWQSLEDLPPFTTSVALDTSRKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA 120 ARVAFDDGWQSL++LPPF T+VALDT+RKVITRN+SPDIGFDRSINPYRGCEHGCVYCFA Sbjct: 55 ARVAFDDGWQSLDELPPFKTTVALDTARKVITRNESPDIGFDRSINPYRGCEHGCVYCFA 114 Query: 121 RPTHAYLGLSPGLDFESKLFAKPDAPALLEKELAAPDYEARMIAIGTNTDPYQPIERDRK 180 RPTHAYLGLSPGLDFES+LFAKPDAPALLEKELAA DY+ RMIAIGTNTDPYQPIER+ K Sbjct: 115 RPTHAYLGLSPGLDFESRLFAKPDAPALLEKELAAADYQPRMIAIGTNTDPYQPIEREHK 174 Query: 181 IMRGILEVLERAGHPVGIVTKSALVVRDIDILARMAKRNLAKVALSVTTLDPKLARTMEP 240 IMRG+LEVLE+ GHPVGIVTKSALV RDIDILARMAKR LAKVALSVT+LDPKLARTMEP Sbjct: 175 IMRGVLEVLEKTGHPVGIVTKSALVTRDIDILARMAKRQLAKVALSVTSLDPKLARTMEP 234 Query: 241 RASTPPKRLEAIKRLADAGIPTTVMVAPVIPALNDSEIERILDAAAHAGAREASYVLLRL 300 RAS P KRLEA+KRL++AGIPTTVMVAPVIPALND EIERILDAAAHAG +EASYV+LRL Sbjct: 235 RASAPEKRLEALKRLSEAGIPTTVMVAPVIPALNDVEIERILDAAAHAGVKEASYVMLRL 294 Query: 301 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPMAWMIGRRFEI 360 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGP+AWMIGRRFE Sbjct: 295 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFET 354 Query: 361 ACEKLGLNKRRTKLTTDHFAKPKRNGQQLSLF 392 AC +LGLNKRR+KLTTDHF KP+R GQQLSLF Sbjct: 355 ACARLGLNKRRSKLTTDHFEKPERAGQQLSLF 386 >ref|YP_004107555.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris DX-1] gb|ADU42822.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1] Length = 386 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/392 (86%), Positives = 363/392 (92%), Gaps = 6/392 (1%) Query: 1 MSRASSHALKHPPVTAPSDNPAGAPSHIPAPFPELAVAIERERRRGRGAQSNASGRYEAE 60 MSRAS +ALK PPVT PS+ P GAPS PFP + A++++RRRGRGAQSNASGRYEAE Sbjct: 1 MSRAS-NALKRPPVTVPSE-PVGAPS----PFPAIEGAVDQQRRRGRGAQSNASGRYEAE 54 Query: 61 ARVAFDDGWQSLEDLPPFTTSVALDTSRKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA 120 AR AFDDGW+SLEDLPPF T+VALDT+RKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA Sbjct: 55 ARTAFDDGWESLEDLPPFKTTVALDTARKVITRNDSPDIGFDRSINPYRGCEHGCVYCFA 114 Query: 121 RPTHAYLGLSPGLDFESKLFAKPDAPALLEKELAAPDYEARMIAIGTNTDPYQPIERDRK 180 RPTHAYLGLSPGLDFES+LFAKPDAP LLEKELA DYE + IAIGTNTDPYQPIERD+K Sbjct: 115 RPTHAYLGLSPGLDFESRLFAKPDAPTLLEKELATADYEPKTIAIGTNTDPYQPIERDQK 174 Query: 181 IMRGILEVLERAGHPVGIVTKSALVVRDIDILARMAKRNLAKVALSVTTLDPKLARTMEP 240 IMRGILEVLE+ GHPVGIVTKSALVVRDIDILARMAKR LAKVALSVT+LDPKLAR+MEP Sbjct: 175 IMRGILEVLEKTGHPVGIVTKSALVVRDIDILARMAKRQLAKVALSVTSLDPKLARSMEP 234 Query: 241 RASTPPKRLEAIKRLADAGIPTTVMVAPVIPALNDSEIERILDAAAHAGAREASYVLLRL 300 RASTP KRLEA+K LADAGIPTTVMVAPVIPALND EIERILDAAAHAG +EASYVLLRL Sbjct: 235 RASTPAKRLEALKLLADAGIPTTVMVAPVIPALNDMEIERILDAAAHAGVKEASYVLLRL 294 Query: 301 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPMAWMIGRRFEI 360 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGP+AWMIGRRFE Sbjct: 295 PLEVRDLFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFET 354 Query: 361 ACEKLGLNKRRTKLTTDHFAKPKRNGQQLSLF 392 AC +LGLNKRR+KLTTDHF +P++ GQQLSLF Sbjct: 355 ACARLGLNKRRSKLTTDHFERPEKAGQQLSLF 386