BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0073.0005.p         (81 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5EEC1.2|RNH2_BRASB RecName: Full=Ribonuclease HII; Short=RNa...   120   6e-26
ref|YP_001238421.1| ribonuclease HII [Bradyrhizobium sp. BTAi1] ...   120   6e-26
ref|NP_769161.1| ribonuclease HII [Bradyrhizobium japonicum USDA...   119   1e-25
ref|YP_001204111.1| ribonuclease HII [Bradyrhizobium sp. ORS 278...   119   1e-25
sp|A4YPP8.2|RNH2_BRASO RecName: Full=Ribonuclease HII; Short=RNa...   119   1e-25

>sp|A5EEC1.2|RNH2_BRASB RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 289

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 63/81 (77%), Gaps = 5/81 (6%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPVVAARLKHFPV 60
           VTRDRLMCALA DCPGYGFEQHKGY VPEHL ALDRLGPS HHRS FAPVVAAR KH P 
Sbjct: 206 VTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALDRLGPSVHHRSLFAPVVAARRKHQPW 265

Query: 61  A--AEPDLF---TVDAESEAA 76
           A   EPDLF   TV   SE A
Sbjct: 266 ADVPEPDLFADVTVVTSSEIA 286


>ref|YP_001238421.1| ribonuclease HII [Bradyrhizobium sp. BTAi1]
 gb|ABQ34515.1| RNase HII [Bradyrhizobium sp. BTAi1]
          Length = 292

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 63/81 (77%), Gaps = 5/81 (6%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPVVAARLKHFPV 60
           VTRDRLMCALA DCPGYGFEQHKGY VPEHL ALDRLGPS HHRS FAPVVAAR KH P 
Sbjct: 209 VTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALDRLGPSVHHRSLFAPVVAARRKHQPW 268

Query: 61  A--AEPDLF---TVDAESEAA 76
           A   EPDLF   TV   SE A
Sbjct: 269 ADVPEPDLFADVTVVTSSEIA 289


>ref|NP_769161.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110]
 sp|Q89S84.1|RNH2_BRAJA RecName: Full=Ribonuclease HII; Short=RNase HII
 dbj|BAC47786.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110]
          Length = 261

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPVVAARLKHFPV 60
           VTRDRLMCALA DCPGYGFEQHKGY VPEHL+AL+RLGP+ HHRSFFAPV AAR KH P 
Sbjct: 172 VTRDRLMCALAQDCPGYGFEQHKGYGVPEHLDALNRLGPTVHHRSFFAPVAAARAKHMPW 231

Query: 61  AAEP--DLF 67
             EP  DLF
Sbjct: 232 TVEPVRDLF 240


>ref|YP_001204111.1| ribonuclease HII [Bradyrhizobium sp. ORS 278]
 emb|CAL75874.1| Ribonuclease HII [Bradyrhizobium sp. ORS 278]
          Length = 289

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/69 (84%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPVVAARLKHFPV 60
           VTRDRLMCALA DCPGYGFEQHKGYAVPEHL ALDRLGPS HHRS FAPVVAAR KH P 
Sbjct: 206 VTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALDRLGPSVHHRSLFAPVVAARRKHQPW 265

Query: 61  A--AEPDLF 67
               EPDLF
Sbjct: 266 TDVPEPDLF 274


>sp|A4YPP8.2|RNH2_BRASO RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 277

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/69 (84%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPVVAARLKHFPV 60
           VTRDRLMCALA DCPGYGFEQHKGYAVPEHL ALDRLGPS HHRS FAPVVAAR KH P 
Sbjct: 194 VTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALDRLGPSVHHRSLFAPVVAARRKHQPW 253

Query: 61  A--AEPDLF 67
               EPDLF
Sbjct: 254 TDVPEPDLF 262