BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0003.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_568348.1| hypothetical protein RPD_1209 [Rhodopseudomonas... 245 4e-63 ref|NP_769162.1| hypothetical protein blr2522 [Bradyrhizobium ja... 243 2e-62 ref|YP_484703.1| hypothetical protein RPB_1082 [Rhodopseudomonas... 226 2e-57 ref|ZP_08628674.1| hypothetical protein CSIRO_1757 [Bradyrhizobi... 223 2e-56 ref|YP_578415.1| hypothetical protein Nham_3220 [Nitrobacter ham... 216 3e-54 >ref|YP_568348.1| hypothetical protein RPD_1209 [Rhodopseudomonas palustris BisB5] gb|ABE38447.1| hypothetical protein RPD_1209 [Rhodopseudomonas palustris BisB5] Length = 528 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 136/220 (61%), Positives = 168/220 (76%) Query: 2 TVVVFSSPSVEFGPLILARPLWALLLLHSWQLIGQNRRSAWFAWSIDCGLLLLTTPAAIG 61 TV F+ EFGPL+LARPLWAL+L HSW++IG+ RRSAWFA SI+ GLLLLTT AA Sbjct: 146 TVTAFAEQGAEFGPLVLARPLWALVLWHSWEIIGRGRRSAWFALSIEVGLLLLTTVAAPA 205 Query: 62 MILLVTGFALATERGRRMLKSVDPIYALLVIIVLALPYLIWLVRADVLALPALPALADLK 121 ++LL GFAL+T R RR L S+DP+++LLV+ VL LPY IWL+RAD+ ALP+LPAL DL Sbjct: 206 LLLLPIGFALSTARSRRALMSLDPMFSLLVVAVLVLPYGIWLLRADIFALPSLPALGDLG 265 Query: 122 ARALRWGVVLGGLIVATAAIALLAILNSRWFAGKTEDAPIIYRPPVSPLARQFVYFFAFA 181 RAL + GGL+VA +ALL +LN+ F + +DAP++YR PV PLARQFVYFFA A Sbjct: 266 DRALLGVELFGGLVVAIGGMALLVLLNTSRFDPRPDDAPVVYRAPVDPLARQFVYFFALA 325 Query: 182 PAIASSFVSGLFNLDRAFGGAGVALLMSGLAVVVATGDLI 221 PA+ + V+GLF L GGAG+ALLM GLAVV+ATGDLI Sbjct: 326 PALLGAIVAGLFGLKHVIGGAGIALLMVGLAVVIATGDLI 365 >ref|NP_769162.1| hypothetical protein blr2522 [Bradyrhizobium japonicum USDA 110] dbj|BAC47787.1| blr2522 [Bradyrhizobium japonicum USDA 110] Length = 502 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/221 (63%), Positives = 175/221 (79%) Query: 1 MTVVVFSSPSVEFGPLILARPLWALLLLHSWQLIGQNRRSAWFAWSIDCGLLLLTTPAAI 60 MTV+ FSSP+++FGPL+LARPLWALLLLHSWQ+IGQ R +AWFAWSI+ GLLLLTTPAA+ Sbjct: 120 MTVLAFSSPALDFGPLVLARPLWALLLLHSWQIIGQRRGNAWFAWSIEAGLLLLTTPAAV 179 Query: 61 GMILLVTGFALATERGRRMLKSVDPIYALLVIIVLALPYLIWLVRADVLALPALPALADL 120 ++LL+ FA AT GRR L ++DP++AL+V+ VLALPY +WL+RA+ L LPALPA+A+L Sbjct: 180 FLLLLLVVFAFATAGGRRTLLALDPLFALIVVAVLALPYAVWLMRAETLVLPALPAVAEL 239 Query: 121 KARALRWGVVLGGLIVATAAIALLAILNSRWFAGKTEDAPIIYRPPVSPLARQFVYFFAF 180 RA+ +LGGL++ AAI L LN+ F K E+APIIYRPPV PLAR FVYFFA Sbjct: 240 STRAIHAAWLLGGLVLGAAAIPALTFLNTGLFLAKGEEAPIIYRPPVEPLARNFVYFFAL 299 Query: 181 APAIASSFVSGLFNLDRAFGGAGVALLMSGLAVVVATGDLI 221 APA+ + +SGLF L+ GGAGV L+MSGLAVVV GDLI Sbjct: 300 APALGAVLISGLFGLESVVGGAGVVLVMSGLAVVVGAGDLI 340 >ref|YP_484703.1| hypothetical protein RPB_1082 [Rhodopseudomonas palustris HaA2] gb|ABD05792.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 502 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 135/220 (61%), Positives = 165/220 (75%), Gaps = 1/220 (0%) Query: 2 TVVVFSSPSVEFGPLILARPLWALLLLHSWQLIGQNRRSAWFAWSIDCGLLLLTTPAAIG 61 T+ F+ P V FGPL+LARPLWAL+L HSW++IG+ RRSAWFA SI+ GLLLLTT AA Sbjct: 121 TITAFAEPGVAFGPLVLARPLWALVLWHSWEIIGRGRRSAWFALSIEVGLLLLTTVAAPA 180 Query: 62 MILLVTGFALATERGRRMLKSVDPIYALLVIIVLALPYLIWLVRADVLALPALPALADLK 121 ++LL GFALAT R RR L S DP++ LLVI VL LPY IWLVRAD+ ALP LPA +L Sbjct: 181 LLLLPIGFALATARSRRALMSFDPLFGLLVIAVLVLPYGIWLVRADIFALPPLPASTELG 240 Query: 122 ARALRWGVVLGGLIVATAAIALLAILNSRWFAGKTEDAPIIYRPPVSPLARQFVYFFAFA 181 RA+ + GGL+VA +ALLA+LN+R+ G ++DAP++YR PV PLARQFVY FA A Sbjct: 241 DRAILAAELFGGLLVALGGVALLALLNTRFDRG-SDDAPVVYRAPVDPLARQFVYVFALA 299 Query: 182 PAIASSFVSGLFNLDRAFGGAGVALLMSGLAVVVATGDLI 221 PA+ +GLF L GGAG+ALL+ GLAVV+ATGDLI Sbjct: 300 PALLGCIAAGLFGLSHVLGGAGIALLLVGLAVVMATGDLI 339 >ref|ZP_08628674.1| hypothetical protein CSIRO_1757 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08739.1| hypothetical protein CSIRO_1757 [Bradyrhizobiaceae bacterium SG-6C] Length = 506 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 118/219 (53%), Positives = 154/219 (70%) Query: 3 VVVFSSPSVEFGPLILARPLWALLLLHSWQLIGQNRRSAWFAWSIDCGLLLLTTPAAIGM 62 + FS P EFGP I+ARPLWAL+LLH+WQ+IGQ RR AW ++ GLL+LTT AA+ + Sbjct: 122 ITAFSFPGAEFGPAIVARPLWALILLHAWQIIGQGRRRAWVVLPVEIGLLVLTTSAALPL 181 Query: 63 ILLVTGFALATERGRRMLKSVDPIYALLVIIVLALPYLIWLVRADVLALPALPALADLKA 122 + ++ F LAT GRR L S+D +YA +V+ V+ LPY+IWL+R D L LP+LPA+A L+ Sbjct: 182 LAMLAVFVLATPNGRRALASMDTLYAAIVLAVVVLPYVIWLIRIDTLTLPSLPAVAQLQD 241 Query: 123 RALRWGVVLGGLIVATAAIALLAILNSRWFAGKTEDAPIIYRPPVSPLARQFVYFFAFAP 182 RAL WG +L GL+ A + + LL I NSR K ED P+I+RPPV P R FVY FA P Sbjct: 242 RALDWGGLLAGLVFALSGVVLLLIANSRVLDRKNEDPPLIFRPPVDPFGRLFVYVFALVP 301 Query: 183 AIASSFVSGLFNLDRAFGGAGVALLMSGLAVVVATGDLI 221 A SF++ LF D+ GG G+ALL+ GLA+V+A GDLI Sbjct: 302 PFALSFIAALFGHDQVTGGDGIALLLVGLAIVIAAGDLI 340 >ref|YP_578415.1| hypothetical protein Nham_3220 [Nitrobacter hamburgensis X14] gb|ABE63955.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 502 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/221 (62%), Positives = 165/221 (74%) Query: 1 MTVVVFSSPSVEFGPLILARPLWALLLLHSWQLIGQNRRSAWFAWSIDCGLLLLTTPAAI 60 MTV F +P + FGPL+LA PLWALLLLH+WQ+IGQ RR+AWFA SI+ GLLLLTTPAA Sbjct: 120 MTVTAFGAPGLTFGPLVLAFPLWALLLLHAWQVIGQGRRNAWFALSIEAGLLLLTTPAAA 179 Query: 61 GMILLVTGFALATERGRRMLKSVDPIYALLVIIVLALPYLIWLVRADVLALPALPALADL 120 G++L + FALATERGR L+S+D ++ALLVI VLALPYLIWLVRADVL P PAL L Sbjct: 180 GLLLALAVFALATERGRNALESIDWLFALLVITVLALPYLIWLVRADVLGAPPWPALDVL 239 Query: 121 KARALRWGVVLGGLIVATAAIALLAILNSRWFAGKTEDAPIIYRPPVSPLARQFVYFFAF 180 R LRWG +L L+VA A + LL +LNS K EDAP+I RPP PLA+ FVY FA Sbjct: 240 HLRLLRWGELLLSLMVAMAGLVLLVVLNSELVNWKPEDAPVIVRPPADPLAQNFVYVFAL 299 Query: 181 APAIASSFVSGLFNLDRAFGGAGVALLMSGLAVVVATGDLI 221 APA+ S V+ LF +D GG +ALLMSGLAVV+ +GDLI Sbjct: 300 APALGGSLVAALFGVDHVVGGVAIALLMSGLAVVLLSGDLI 340