BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0001.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769163.1| hypothetical protein bll2523 [Bradyrhizobium ja... 416 e-114 ref|YP_001990243.1| phage SPO1 DNA polymerase-like protein [Rhod... 400 e-110 ref|YP_004107559.1| phage SPO1 DNA polymerase-like protein [Rhod... 400 e-109 ref|YP_001204113.1| putative DNA polymerases [Bradyrhizobium sp.... 399 e-109 ref|YP_484704.1| phage SPO1 DNA polymerase-related protein [Rhod... 395 e-108 >ref|NP_769163.1| hypothetical protein bll2523 [Bradyrhizobium japonicum USDA 110] dbj|BAC47788.1| bll2523 [Bradyrhizobium japonicum USDA 110] Length = 271 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/273 (78%), Positives = 228/273 (83%), Gaps = 16/273 (5%) Query: 6 PEPTPTLQQLLAFYLEAGVDCALGDAPINRLEE-------PEPVPAPAAPRPSAALNPLR 58 PEP PT+++LLAFYLEAGVDCAL + PI+RL E P APRP AA Sbjct: 3 PEPAPTVRELLAFYLEAGVDCALTEEPIDRLAEIAAPPPVPRAAAPVEAPRPVAA----- 57 Query: 59 PPPMPSVPRSEITVAPDAAIASAREAARTAPTLEALRALMENFDGCALKHTATRLVFADG 118 P+V R E APD AIASAREAARTAPTLEALR LM+ F+GCALKHTATRLVFADG Sbjct: 58 ----PAVIRGEAAPAPDVAIASAREAARTAPTLEALRELMQGFEGCALKHTATRLVFADG 113 Query: 119 NPQARVMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIAAIGLDRSKAYIANVIPWRPPGNR 178 NPQAR+MFVGEAPGRDEDIEGLPFVGRSGKLLD MI AIGL+R+ AYIANVIPWRPPGNR Sbjct: 114 NPQARIMFVGEAPGRDEDIEGLPFVGRSGKLLDLMIGAIGLNRTTAYIANVIPWRPPGNR 173 Query: 179 TPTPQETQVCLPFIQRHIELVNPDVLVTLGNPSTQALLGTREGIMRTRGKWIDYDTGTRT 238 TPTPQETQVCLPFIQR IELVNPDVLVTLGNPSTQ LLGTREGIMRTRG+W DY+T RT Sbjct: 174 TPTPQETQVCLPFIQRQIELVNPDVLVTLGNPSTQTLLGTREGIMRTRGRWFDYETAGRT 233 Query: 239 IRAVATFHPAYLLRSPSYKRLSWQDLRAIAKVL 271 IRA+ TFHPAYLLRSPSYKRL+WQDLRAIAKVL Sbjct: 234 IRALPTFHPAYLLRSPSYKRLAWQDLRAIAKVL 266 >ref|YP_001990243.1| phage SPO1 DNA polymerase-like protein [Rhodopseudomonas palustris TIE-1] gb|ACE99767.1| phage SPO1 DNA polymerase-related protein [Rhodopseudomonas palustris TIE-1] Length = 276 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/271 (73%), Positives = 226/271 (83%), Gaps = 3/271 (1%) Query: 6 PEPTPTLQQLLAFYLEAGVDCALGDAPINRL--EEPEPVPAPAAPRPSAALNP-LRPPPM 62 P+P P+L+QLLAFYL+AGVDCAL + P+NR+ + P+P AAP P + P L P Sbjct: 3 PDPAPSLRQLLAFYLDAGVDCALAEGPVNRMLDDAPDPAAREAAPEPRPIVKPALHAKPP 62 Query: 63 PSVPRSEITVAPDAAIASAREAARTAPTLEALRALMENFDGCALKHTATRLVFADGNPQA 122 P + +PDAAI SAREAA TAPTLEALR LM+ FDGCAL+ TAT+LVFADGNPQA Sbjct: 63 PPLAFGAPPASPDAAIISAREAAATAPTLEALRELMQRFDGCALRATATQLVFADGNPQA 122 Query: 123 RVMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIAAIGLDRSKAYIANVIPWRPPGNRTPTP 182 +VMFVGEAPGRDEDIEGLPFVGRSGKLLD M+AAIGL+R YIANVIPWRPPGNRTPTP Sbjct: 123 KVMFVGEAPGRDEDIEGLPFVGRSGKLLDLMLAAIGLNRGNVYIANVIPWRPPGNRTPTP 182 Query: 183 QETQVCLPFIQRHIELVNPDVLVTLGNPSTQALLGTREGIMRTRGKWIDYDTGTRTIRAV 242 QETQ+CLPFI+R IELVNPD+LVTLGNPSTQALLGTR+GIMRTRG+W DYDTGTRTIRA+ Sbjct: 183 QETQICLPFIRRQIELVNPDLLVTLGNPSTQALLGTRDGIMRTRGRWFDYDTGTRTIRAL 242 Query: 243 ATFHPAYLLRSPSYKRLSWQDLRAIAKVLQA 273 T HPAYLLR P+YKRL+WQDLRAIA L A Sbjct: 243 PTLHPAYLLRQPTYKRLAWQDLRAIATALAA 273 >ref|YP_004107559.1| phage SPO1 DNA polymerase-like protein [Rhodopseudomonas palustris DX-1] gb|ADU42826.1| phage SPO1 DNA polymerase-related protein [Rhodopseudomonas palustris DX-1] Length = 275 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/271 (74%), Positives = 224/271 (82%), Gaps = 2/271 (0%) Query: 6 PEPTPTLQQLLAFYLEAGVDCALGDAPINRLEEPEPVPA-PAAPRPSAALNPLRPPPMPS 64 P+P P+L+QLLAFYL+AGVDCAL DAP+NR+ + P PA A PS A+ P Sbjct: 3 PDPVPSLRQLLAFYLDAGVDCALADAPVNRMLDEAPAPAGHEATEPSRAVKPALQAQPAP 62 Query: 65 VPRSEITV-APDAAIASAREAARTAPTLEALRALMENFDGCALKHTATRLVFADGNPQAR 123 P PDAAI SAREAA TAPTLEALR LM+ FDGCAL+ TA +LVFADGNPQA+ Sbjct: 63 PPPRATQPATPDAAIVSAREAAATAPTLEALRDLMQQFDGCALRGTAKQLVFADGNPQAK 122 Query: 124 VMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIAAIGLDRSKAYIANVIPWRPPGNRTPTPQ 183 +M VGEAPGRDEDIEGLPFVGRSGKLLD M+AAIGLDRSK YIANVIPWRPPGNRTPTPQ Sbjct: 123 LMLVGEAPGRDEDIEGLPFVGRSGKLLDLMLAAIGLDRSKVYIANVIPWRPPGNRTPTPQ 182 Query: 184 ETQVCLPFIQRHIELVNPDVLVTLGNPSTQALLGTREGIMRTRGKWIDYDTGTRTIRAVA 243 ETQ+CLPFI+R IELVNPD+LVTLGNPSTQALLGTR+GIMRTRG+W DYDTGTRTIRA+ Sbjct: 183 ETQICLPFIKRQIELVNPDLLVTLGNPSTQALLGTRDGIMRTRGRWFDYDTGTRTIRALP 242 Query: 244 TFHPAYLLRSPSYKRLSWQDLRAIAKVLQAA 274 T HPAYLLR P+YKRL+WQDLRAIA L AA Sbjct: 243 TLHPAYLLRQPTYKRLAWQDLRAIATALSAA 273 >ref|YP_001204113.1| putative DNA polymerases [Bradyrhizobium sp. ORS 278] emb|CAL75876.1| putative DNA polymerases [Bradyrhizobium sp. ORS 278] Length = 273 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/270 (79%), Positives = 231/270 (85%), Gaps = 2/270 (0%) Query: 4 LPPEPTPTLQQLLAFYLEAGVDCALGDAPINRLEEPEPVPAPAAPRPSAALNPLRPPPMP 63 + PEP P ++QLLAFYLEAGVDCAL D PINRL EP+ PAP A A P P Sbjct: 2 MNPEPLPDVRQLLAFYLEAGVDCALADDPINRLVEPDAAPAPVAAAARQAAPQPGRSPAP 61 Query: 64 SV--PRSEITVAPDAAIASAREAARTAPTLEALRALMENFDGCALKHTATRLVFADGNPQ 121 ++ PR E APDAAIASARE+ARTAPTL+ALR L+E FDGCALK TA+RLVFADGNP+ Sbjct: 62 AIISPRGEPPPAPDAAIASARESARTAPTLQALRELLETFDGCALKQTASRLVFADGNPE 121 Query: 122 ARVMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIAAIGLDRSKAYIANVIPWRPPGNRTPT 181 ARVM VGEAPGRDEDIEGLPFVGRSGKLLDRMI AIGLDR+K YIANVIPWRPPGNRTPT Sbjct: 122 ARVMLVGEAPGRDEDIEGLPFVGRSGKLLDRMIGAIGLDRTKVYIANVIPWRPPGNRTPT 181 Query: 182 PQETQVCLPFIQRHIELVNPDVLVTLGNPSTQALLGTREGIMRTRGKWIDYDTGTRTIRA 241 PQETQ+CLPFI+R IELV+PDVLVTLGNPSTQALLGT EGIMRTRGKW DYDTG RTIRA Sbjct: 182 PQETQICLPFIRRQIELVDPDVLVTLGNPSTQALLGTTEGIMRTRGKWRDYDTGKRTIRA 241 Query: 242 VATFHPAYLLRSPSYKRLSWQDLRAIAKVL 271 +ATFHPAYLLRSPSYKRLSWQDLRAIA VL Sbjct: 242 IATFHPAYLLRSPSYKRLSWQDLRAIATVL 271 >ref|YP_484704.1| phage SPO1 DNA polymerase-related protein [Rhodopseudomonas palustris HaA2] gb|ABD05793.1| phage SPO1 DNA polymerase-related protein [Rhodopseudomonas palustris HaA2] Length = 277 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/272 (72%), Positives = 223/272 (81%), Gaps = 1/272 (0%) Query: 4 LPPEPTPTLQQLLAFYLEAGVDCALGDAPINRLEEPEPVPAPAAPRPSAALNPLRPP-PM 62 + PEP P+L+QLLAFYLEAGVDCAL D PINR+ + E A P A + +RPP P Sbjct: 1 MTPEPAPSLKQLLAFYLEAGVDCALTDEPINRMLDDETATPAIADAPVARADTIRPPAPR 60 Query: 63 PSVPRSEITVAPDAAIASAREAARTAPTLEALRALMENFDGCALKHTATRLVFADGNPQA 122 P+ +P+AAI SAREAA TAPTLEALRALME F+GCAL+ TATRLVFADGNPQA Sbjct: 61 PTALPGVAPPSPEAAIVSAREAAATAPTLEALRALMEQFEGCALRSTATRLVFADGNPQA 120 Query: 123 RVMFVGEAPGRDEDIEGLPFVGRSGKLLDRMIAAIGLDRSKAYIANVIPWRPPGNRTPTP 182 R+M VGEAPGR+EDIEGLPFVGRSGKLLD M+AAIGLDRS+ YIANVIPWRPPGNRTPTP Sbjct: 121 RLMLVGEAPGREEDIEGLPFVGRSGKLLDLMLAAIGLDRSQVYIANVIPWRPPGNRTPTP 180 Query: 183 QETQVCLPFIQRHIELVNPDVLVTLGNPSTQALLGTREGIMRTRGKWIDYDTGTRTIRAV 242 QETQ+CLPFI+R IELVNP +LVTLGNPSTQ LL TR+GI RTRG+W DYD GTR IRA+ Sbjct: 181 QETQICLPFIKRQIELVNPAILVTLGNPSTQTLLSTRDGITRTRGRWFDYDNGTRMIRAM 240 Query: 243 ATFHPAYLLRSPSYKRLSWQDLRAIAKVLQAA 274 T HPAYLLR P+YKRL+WQDLRAIA L A+ Sbjct: 241 PTLHPAYLLRQPTYKRLAWQDLRAIATALAAS 272