BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0155.p (198 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_569075.1| hypothetical protein RPD_1939 [Rhodopseudomonas... 134 8e-30 ref|YP_004109973.1| hypothetical protein Rpdx1_3673 [Rhodopseudo... 129 2e-28 ref|YP_001991054.1| hypothetical protein Rpal_2056 [Rhodopseudom... 122 3e-26 ref|NP_769707.1| hypothetical protein blr3067 [Bradyrhizobium ja... 120 1e-25 ref|YP_577869.1| hypothetical protein Nham_2628 [Nitrobacter ham... 114 6e-24 >ref|YP_569075.1| hypothetical protein RPD_1939 [Rhodopseudomonas palustris BisB5] gb|ABE39174.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 302 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 92/165 (55%), Positives = 111/165 (67%), Gaps = 21/165 (12%) Query: 46 PPAPADGSAPPKRRNLLFSSS-RKERERSQGRAAEPLTPDLLSPELRSNPGDSAEPA--P 102 PP PA+ + K+RNLLFSSS RKERER+ ++ +P+ P+ +PE P SA PA P Sbjct: 145 PPPPAESNT--KKRNLLFSSSSRKERERAAAKSGDPIEPEGTAPE----PASSA-PAIPP 197 Query: 103 ATFDDAWPKAX----DVAARRGPRTPSTFGEAQSAAAA------SPSSGHPPPPQEQPPV 152 TF++AWP++ D ARRG R+ G+A+ A A SP P +E V Sbjct: 198 RTFEEAWPESDRPRGDSGARRG-RSLFGGGDAREPAPAEPERPKSPERTPAPRSEETTEV 256 Query: 153 TVLKSGVVDGMAYSLYSDGSIEAQMPEGMMRFASIDELRSHLEQR 197 TVLKSGVVDGMAYSLYSDGSIEAQMPEGMMRFASIDELR HL+QR Sbjct: 257 TVLKSGVVDGMAYSLYSDGSIEAQMPEGMMRFASIDELRDHLDQR 301 >ref|YP_004109973.1| hypothetical protein Rpdx1_3673 [Rhodopseudomonas palustris DX-1] gb|ADU45240.1| hypothetical protein Rpdx1_3673 [Rhodopseudomonas palustris DX-1] Length = 320 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/147 (52%), Positives = 88/147 (59%), Gaps = 16/147 (10%) Query: 51 DGSAPPKRRNLLFSSSRKERERSQGRAAEPLTPDLLSPELRSNPGDSAEPAPATFDDAWP 110 + +APPKRRNLLF+SSR+ERERS A + S G +F++AWP Sbjct: 189 EDAAPPKRRNLLFASSRRERERSAAGATDETG--------ESFAGHGPVGTARSFEEAWP 240 Query: 111 KAXDVAARRGPRTPSTFGEAQSAAAASPSSGHPPPPQEQPPVTVLKSGVVDGMAYSLYSD 170 + AA P P G + A P +E VTVLKSGVVDGMAYSLYSD Sbjct: 241 RKRSAAAEEMPLVPERSGLLEPTPA--------PRSEEMQQVTVLKSGVVDGMAYSLYSD 292 Query: 171 GSIEAQMPEGMMRFASIDELRSHLEQR 197 GSIEAQMPEGMMRF SIDELR HLEQR Sbjct: 293 GSIEAQMPEGMMRFESIDELREHLEQR 319 >ref|YP_001991054.1| hypothetical protein Rpal_2056 [Rhodopseudomonas palustris TIE-1] gb|ACF00579.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 292 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 88/155 (56%), Gaps = 30/155 (19%) Query: 49 PADGSAPPKRRNLLFSSSRKERERS-QGRAAEPLTPDLLSPELRSNPGDSAEPAPATFDD 107 P D PPKRRNLLF+SSR+ERER+ Q + P L R F+D Sbjct: 161 PEDEQTPPKRRNLLFASSRRERERAAQAGSEAPAGDLLGGGAGRD------------FED 208 Query: 108 AWPKAXDVAARRGPRTPSTFGEAQSAAAASPSSGHPPPP-----QEQPPVTVLKSGVVDG 162 AWP+ A G TP AA SG P +E VTVLKSGVVDG Sbjct: 209 AWPRKRSAAG--GDETP----------AAPERSGLLEPTPAPRSEEMQQVTVLKSGVVDG 256 Query: 163 MAYSLYSDGSIEAQMPEGMMRFASIDELRSHLEQR 197 MAYSLYSDGSIEAQMPEGMMRF SIDELR HLEQR Sbjct: 257 MAYSLYSDGSIEAQMPEGMMRFESIDELREHLEQR 291 >ref|NP_769707.1| hypothetical protein blr3067 [Bradyrhizobium japonicum USDA 110] dbj|BAC48332.1| blr3067 [Bradyrhizobium japonicum USDA 110] Length = 299 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 92/149 (61%), Gaps = 17/149 (11%) Query: 58 RRNLLF-SSSRKERERSQGRAAEPLTPDLLSPELRSNPGDSAEPAPATFDDAWPK----- 111 RRNLLF S+SRKERER++ +A E P + PA+FDDAWPK Sbjct: 158 RRNLLFASTSRKERERAEAKATEGP-----PPHAEPAAPAGPDTPPASFDDAWPKPDRMR 212 Query: 112 ---AXDVAARRGPRTPSTFGEAQSAAAASPSSGHPPPPQEQPPVTVLKSGVVDGMAYSLY 168 + R PR+PSTF A P EQ PVTVLKSGVVDGMAYSLY Sbjct: 213 PPEPPAASRRPPPRSPSTF---VEATPPPAPEPESEPAVEQAPVTVLKSGVVDGMAYSLY 269 Query: 169 SDGSIEAQMPEGMMRFASIDELRSHLEQR 197 SDGSIEAQMPEGMMRFASIDELR+HL+QR Sbjct: 270 SDGSIEAQMPEGMMRFASIDELRAHLDQR 298 >ref|YP_577869.1| hypothetical protein Nham_2628 [Nitrobacter hamburgensis X14] gb|ABE63409.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 305 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 90/202 (44%), Positives = 117/202 (57%), Gaps = 25/202 (12%) Query: 6 ANSRPWATGSMPSLPWVCGPGRRLQLPRAALPTIRCSRRXPPAPA--DGSAPPK-RRNLL 62 A S P T S+ S PW R + A+P + P +PA D S+PPK RRNLL Sbjct: 114 AVSGPTVTPSVLSPPWQAEMSIRDRAAVGAVPDVVA----PESPASPDTSSPPKPRRNLL 169 Query: 63 FSSS-RKERERSQGRAAEPLTPDLLSPELRSNPGDSAEPAPATFDDAWPKAXDVAARRGP 121 F+SS RKERER+ ++P L P ++ D PA+FD+AWP R Sbjct: 170 FASSMRKERERALAERSDP--AGLFPPAPATHAPDLDVSRPASFDNAWP--------RSE 219 Query: 122 RTPSTFGEAQSAAAASPS-----SGHPPPPQEQPPVTVLKSGVVDGMAYSLYSDGSIEAQ 176 R+ G A SAA++ + SG Q VTV++SGVVDGMAYSL+SDG+IEA Sbjct: 220 RSRPESGRAPSAASSGGTRADRLSGRHG--QNASAVTVVRSGVVDGMAYSLFSDGTIEAL 277 Query: 177 MPEGMMRFASIDELRSHLEQRP 198 +PEGMMRFAS+D+LR+HL+Q P Sbjct: 278 LPEGMMRFASVDQLRAHLDQGP 299