BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0144.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769717.1| transcriptional regulator [Bradyrhizobium japon... 413 e-113 ref|YP_437194.1| transcriptional regulator [Hahella chejuensis K... 187 2e-45 ref|YP_928669.1| regulatory protein, LysR [Shewanella amazonensi... 186 4e-45 ref|YP_001093029.1| LysR family transcriptional regulator [Shewa... 184 2e-44 ref|ZP_01076289.1| putative transcriptional regulator, LysR fami... 180 2e-43 >ref|NP_769717.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48342.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/270 (72%), Positives = 229/270 (84%) Query: 1 MDIRELRYFAAVYRERNLTAAAKRCFISQPSISAAITNLEAELGTTLFIRHKKGMAPTAS 60 MDIRELRYFAAVYR RNLTAAA+ CF+SQPSIS AITNLEAELGTTLFIRHKKG+APTAS Sbjct: 1 MDIRELRYFAAVYRARNLTAAARACFVSQPSISTAITNLEAELGTTLFIRHKKGVAPTAS 60 Query: 61 AVQFHGIARRIIDEADAARNLFRNPATRQALTLGLLRTLDQARTIALLKPLTGNTDLALR 120 A QFH +ARRIIDE+DAAR+LFR ATR +TLGL+RTLD RTIALLKPLT +D+ALR Sbjct: 61 AEQFHALARRIIDESDAARSLFRKQATRTTVTLGLMRTLDVPRTIALLKPLTARSDIALR 120 Query: 121 LVGASEKADARIVAKTMVGAGEHFIPLWSERYVAALPPSHPLTLKETLRTTDFAGVPMID 180 LVG+ E+ADARI++K+M+ A EHF+ LWSERYVAALPPSHPLTLKE LR D AG MID Sbjct: 121 LVGSDERADARIISKSMLRADEHFVALWSERYVAALPPSHPLTLKEKLRAADLAGAAMID 180 Query: 181 RCHCEQQEFFKRASPPRKPVAIAESEEWAMALVAAGVGVAIVPEGVARGNPDVTMRAIDI 240 RCHCEQ +FF RA+ R+ AIA+SE+WAMALVAAG+G+AIVPEGVARGNPDV +R I++ Sbjct: 181 RCHCEQSQFFGRAAQRRQTAAIAQSEDWAMALVAAGIGIAIVPEGVARGNPDVAVREIEV 240 Query: 241 DVTRQVGLAYPSAQPPSDALKAFIASLPRQ 270 V R+VGLAY ++ P +DALK + L +Q Sbjct: 241 KVKREVGLAYRASVPLADALKDLVGKLQKQ 270 >ref|YP_437194.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gb|ABC32769.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 289 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 103/258 (39%), Positives = 153/258 (59%), Gaps = 7/258 (2%) Query: 1 MDIRELRYFAAVYRERNLTAAAKRCFISQPSISAAITNLEAELGTTLFIRHKKGMAPTAS 60 MD+RELRYF AVY +++AAA+RC+++QPSISAAI +LE+ L T LF RH KG+ P+ S Sbjct: 1 MDLRELRYFIAVYELGSISAAARRCYVAQPSISAAIQHLESHLDTLLFSRHSKGVYPSDS 60 Query: 61 AVQFHGIARRIIDEADAARNLFRNPATRQALTLGLLRTLDQARTIALLKPLTGNTD-LAL 119 A + + +A+++ EA A LFRN +LGL+R+L R LLK L + + L L Sbjct: 61 AQRLYPLAKKLTSEAQAISQLFRNKPQPMPFSLGLMRSLGAERMSFLLKELIQSVESLEL 120 Query: 120 RLVGASEKADARIVAKTMVGAGEHFIPLWSERYVAALPPSHPLTLKETLRTTDFAGVPMI 179 LV E DARI+ + E F P+W +RY+ ALP H L+L+E + + +P I Sbjct: 121 SLVNPEEPCDARIITPAYLREDERFQPIWLDRYLLALPAGHSLSLQEQVSLEELDNLPFI 180 Query: 180 DRCHCEQQEFFKRASPPRKPVAIAESE----EWAMALVAAGVGVAIVPEG-VARGNPDVT 234 R C+ E ++ RK + + E+A+ LV+AGVG A+ P+ R D+ Sbjct: 181 HRSPCDALESLQQELRHRKISFLTRANIRTIEYALGLVSAGVGAALAPDWPETRERKDIV 240 Query: 235 MR-AIDIDVTRQVGLAYP 251 +R +D+ + ++GLAYP Sbjct: 241 LRPLVDVKLELEIGLAYP 258 >ref|YP_928669.1| regulatory protein, LysR [Shewanella amazonensis SB2B] gb|ABM01000.1| regulatory protein, LysR [Shewanella amazonensis SB2B] Length = 278 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 108/279 (38%), Positives = 162/279 (58%), Gaps = 8/279 (2%) Query: 1 MDIRELRYFAAVYRERNLTAAAKRCFISQPSISAAITNLEAELGTTLFIRHKKGMAPTAS 60 M+++ L YF AV +++AAAK C+I+QPSISAAI LE+ELG LF RH KG++ T + Sbjct: 1 MNLKALNYFVAVLERGSISAAAKHCYIAQPSISAAIGALESELGVQLFARHGKGVSATDA 60 Query: 61 AVQFHGIARRIIDEADAARNLFRNPATRQALTLGLLRTLDQARTIALLKPLTGNT-DLAL 119 ++ + +A+R+++E+ A ++LF P T+ LGL+R+L +R LLK T D+ L Sbjct: 61 GMRLYPLAKRLLNESKAIQSLFSKPETQVPFRLGLIRSLGVSRMSMLLKDFTAACPDMDL 120 Query: 120 RLVGASEKADARIVAKTMVGAGEHFIPLWSERYVAALPPSHPLTLKETLRTTDFAGVPMI 179 LV SE+ D RI+ + E F +W + Y+ A+PP+ L LK ++R D G P I Sbjct: 121 TLVEPSEECDGRIITTADLTPNESFQAMWHDTYLLAIPPALSLALKSSIRLEDLQGQPFI 180 Query: 180 DRCHCEQ----QEFFKRASPPRKPVAIAESEEWAMALVAAGVGVAIVPEGVA-RGNPDVT 234 R CE Q+ + A ++ E+A+ LVAAG+G+A+VP A D+ Sbjct: 181 HRAPCEALTSLQQLLDMEGIKMQVRARIQTIEYAVGLVAAGLGIALVPAIPALLDQQDIV 240 Query: 235 MRAI-DIDVTRQVGLAYPSAQPPSDALKAFIASLPRQAN 272 R + DID+ R VGLA P PP+ + +A L RQ + Sbjct: 241 FRPLADIDLKRTVGLALPLGHPPTPQQRQLVA-LCRQCH 278 >ref|YP_001093029.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gb|ABO22770.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 278 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/256 (40%), Positives = 155/256 (60%), Gaps = 7/256 (2%) Query: 1 MDIRELRYFAAVYRERNLTAAAKRCFISQPSISAAITNLEAELGTTLFIRHKKGMAPTAS 60 M++R L YF AVY + ++AAAK+C+I+QPSIS+AI+ LE EL T LF RH +G++PT S Sbjct: 1 MNLRALSYFVAVYDKGTISAAAKQCYIAQPSISSAISQLEDELNTQLFQRHGRGVSPTES 60 Query: 61 AVQFHGIARRIIDEADAARNLFRNPATRQALTLGLLRTLDQARTIALLKPLT-GNTDLAL 119 A + + +A+R+++E+ A +LF P RQ LGL+ +L R LLK + D+ L Sbjct: 61 AERLYPLAQRLLNESKAIASLFNTPEQRQPFKLGLINSLGVQRMSMLLKDFSQACHDMEL 120 Query: 120 RLVGASEKADARIVAKTMVGAGEHFIPLWSERYVAALPPSHPLTLKETLRTTDFAGVPMI 179 LV A+E DARI+ + + + E F P+W + Y+ A+P + L LK+ +R D +G P I Sbjct: 121 TLVEANEPCDARIITTSQLKSDEVFQPIWHDDYLLAIPSTMSLALKKEIRLQDLSGQPFI 180 Query: 180 DRCHCEQ----QEFFKRASPPRKPVAIAESEEWAMALVAAGVGVAIVPE-GVARGNPDVT 234 R CE Q+ + A ++ E+A+ LVAAGVG+A+VP V ++ Sbjct: 181 HRAPCEALADLQQLMDLEGIKMQIRARIQTVEYAVGLVAAGVGIALVPALPVLMEQSNII 240 Query: 235 MRAI-DIDVTRQVGLA 249 +AI D+ + R VGLA Sbjct: 241 YKAIGDLQLRRTVGLA 256 >ref|ZP_01076289.1| putative transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gb|EAQ65767.1| putative transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 288 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/273 (38%), Positives = 155/273 (56%), Gaps = 7/273 (2%) Query: 1 MDIRELRYFAAVYRERNLTAAAKRCFISQPSISAAITNLEAELGTTLFIRHKKGMAPTAS 60 MDIR LRYF AVY E++L+ AAKRCF++QPSISAAI LEA L TLF RH KG+ T + Sbjct: 1 MDIRSLRYFQAVYEEQSLSGAAKRCFVAQPSISAAIAQLEASLKVTLFTRHSKGVTATDN 60 Query: 61 AVQFHGIARRIIDEADAARNLFRNPATRQALTLGLLRTLDQARTIALLKPLTGNT-DLAL 119 A + A ++I++ A NLF T L++ L+ L + ++K + +L L Sbjct: 61 AKDLYPHACKMINDLQALPNLFTAQQTNLDLSVSLMPFLSGSLVSQVIKSMLEQVPNLQL 120 Query: 120 RLVGASEKADARIVAKTMVGAGEHFIPLWSERYVAALPPSHPLTLKETLRTTDFAGVPMI 179 LV SE+AD R + + + F PLW + YV A+ P HPL + ++ G+P I Sbjct: 121 SLVDESEQADLRFTCQRYLTTNDIFHPLWEDNYVLAMAPHHPLAQQASISLKQIDGLPFI 180 Query: 180 DRCHC---EQQEFFKRASPPRKPV-AIAESEEWAMALVAAGVGVAIVPEGVARGNPDVTM 235 R C E + + V A ++EE+A+ LVAAG+G++++PE AR D+ + Sbjct: 181 SRTPCDIIESWHYLIHKQGIQVDVRAQVKTEEYALDLVAAGLGISLIPEHSARQRTDICL 240 Query: 236 RAI-DIDVTRQVGLAYPSAQP-PSDALKAFIAS 266 R + D + R VGLA+ +Q PS L++ + S Sbjct: 241 RPLHDANFKRLVGLAHHKSQSLPSRLLQSILNS 273