BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0072.0133.p         (212 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771548.1| NADH dehydrogenase subunit J [Bradyrhizobium ja...   388   e-106
ref|YP_001206152.1| NADH dehydrogenase subunit J [Bradyrhizobium...   379   e-103
ref|YP_318490.1| NADH dehydrogenase subunit J [Nitrobacter winog...   364   4e-99
ref|YP_001240489.1| NADH dehydrogenase subunit J [Bradyrhizobium...   359   1e-97
ref|ZP_01047982.1| NADH dehydrogenase subunit J [Nitrobacter sp....   356   1e-96

>ref|NP_771548.1| NADH dehydrogenase subunit J [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50173.1| NADH ubiquinone oxidoreductase chain J [Bradyrhizobium japonicum
           USDA 110]
          Length = 212

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/212 (90%), Positives = 204/212 (96%)

Query: 1   MILPALFFYLFAAVCVASAVMVIVSRNPVHSVLFLILAFVNAAGLFILMGAEFLGMMLIV 60
           MILPALFFYLFA VCVASAVMVIVSRNPVHSVL+LILAFVNA+GLF+LMGAEFLGMMLIV
Sbjct: 1   MILPALFFYLFAGVCVASAVMVIVSRNPVHSVLYLILAFVNASGLFVLMGAEFLGMMLIV 60

Query: 61  VYVGAVAVLFLFVIMMLDVDFVELREGFIQYLPIGIVIGGIFMFELLLVVGAWVINPAVT 120
           VYVGAVAVLFLFVIMMLDVDF+ELREGFI+YLP+G+VIGGIF+FELLL VG WVINP V+
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFLELREGFIEYLPVGLVIGGIFLFELLLTVGFWVINPGVS 120

Query: 121 KTITAAIPTNVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHKAKVKRQNIN 180
           KTITAAIPTNVSNTEALGLVLYTKY++YFQLAGMVLLVAMIGAIVLTLRHK  VKRQ+IN
Sbjct: 121 KTITAAIPTNVSNTEALGLVLYTKYVYYFQLAGMVLLVAMIGAIVLTLRHKVSVKRQDIN 180

Query: 181 VQNARTPEMAMAMRKVASGQGLQDADAAEWVK 212
           VQNARTP+MAMAMRKVA GQGL DADAAEWVK
Sbjct: 181 VQNARTPDMAMAMRKVAPGQGLSDADAAEWVK 212


>ref|YP_001206152.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. ORS 278]
 emb|CAL77927.1| NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           (NDH-1, chain J) [Bradyrhizobium sp. ORS 278]
          Length = 212

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/212 (86%), Positives = 201/212 (94%)

Query: 1   MILPALFFYLFAAVCVASAVMVIVSRNPVHSVLFLILAFVNAAGLFILMGAEFLGMMLIV 60
           MILPALFFYLFAAVCVASAVMVIVS+NPVHSVL+LILAFVNA+GLF+LMGAEFL M+LIV
Sbjct: 1   MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILIV 60

Query: 61  VYVGAVAVLFLFVIMMLDVDFVELREGFIQYLPIGIVIGGIFMFELLLVVGAWVINPAVT 120
           VYVGAVAVLFLFVIMMLDVDF ELREGF+QY+PIG+VIGGIF+FELLL V  WVINP+  
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFTELREGFLQYMPIGLVIGGIFLFELLLTVSYWVINPSTP 120

Query: 121 KTITAAIPTNVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHKAKVKRQNIN 180
           K ITAAIPTNV+NTEALGLVLYTKY+HYFQL+GM+LLVAMIGAIVLTLRHKA VKRQ+IN
Sbjct: 121 KAITAAIPTNVTNTEALGLVLYTKYVHYFQLSGMILLVAMIGAIVLTLRHKASVKRQDIN 180

Query: 181 VQNARTPEMAMAMRKVASGQGLQDADAAEWVK 212
           VQNARTP+MAMA+RKVA GQGLQD DAAEWVK
Sbjct: 181 VQNARTPDMAMAVRKVAVGQGLQDTDAAEWVK 212


>ref|YP_318490.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255]
 gb|ABA05138.1| NADH dehydrogenase subunit J [Nitrobacter winogradskyi Nb-255]
          Length = 212

 Score =  364 bits (935), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 185/212 (87%), Positives = 198/212 (93%)

Query: 1   MILPALFFYLFAAVCVASAVMVIVSRNPVHSVLFLILAFVNAAGLFILMGAEFLGMMLIV 60
           MILPALFFYLFA VCVASA MVI SRNPVHSVLFLILAFVNAAGLFILMGAEFL M+LIV
Sbjct: 1   MILPALFFYLFAGVCVASAAMVISSRNPVHSVLFLILAFVNAAGLFILMGAEFLAMILIV 60

Query: 61  VYVGAVAVLFLFVIMMLDVDFVELREGFIQYLPIGIVIGGIFMFELLLVVGAWVINPAVT 120
           VYVGAVAVLFLFVIMMLDVDF ELREGF++YLP G+VI  IF+ ELLLVVG W +NPAVT
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFAELREGFLEYLPFGLVIAAIFLLELLLVVGGWTLNPAVT 120

Query: 121 KTITAAIPTNVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHKAKVKRQNIN 180
           K+ITAAIP +VSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRH+A VKRQ+IN
Sbjct: 121 KSITAAIPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRAGVKRQDIN 180

Query: 181 VQNARTPEMAMAMRKVASGQGLQDADAAEWVK 212
           VQNARTPEMAM++R+VASGQGLQDAD AEWVK
Sbjct: 181 VQNARTPEMAMSVRQVASGQGLQDADQAEWVK 212


>ref|YP_001240489.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1]
 gb|ABQ36583.1| NADH dehydrogenase subunit J [Bradyrhizobium sp. BTAi1]
          Length = 212

 Score =  359 bits (922), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/212 (86%), Positives = 199/212 (93%)

Query: 1   MILPALFFYLFAAVCVASAVMVIVSRNPVHSVLFLILAFVNAAGLFILMGAEFLGMMLIV 60
           MILPALFFYLFAAVCVASAVMVIVS+NPVHSVL+LILAFVNA+GLF+LMGAEFL M+L+V
Sbjct: 1   MILPALFFYLFAAVCVASAVMVIVSKNPVHSVLYLILAFVNASGLFVLMGAEFLAMILVV 60

Query: 61  VYVGAVAVLFLFVIMMLDVDFVELREGFIQYLPIGIVIGGIFMFELLLVVGAWVINPAVT 120
           VYVGAVAVLFLFVIMMLDVDF ELREGF+QY+PIG+VIGGIF+FELLL V  WVINP   
Sbjct: 61  VYVGAVAVLFLFVIMMLDVDFTELREGFLQYMPIGLVIGGIFLFELLLTVSYWVINPTTP 120

Query: 121 KTITAAIPTNVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHKAKVKRQNIN 180
           K ITAAIPTNV+NTEALGLVLYTKYIHYFQL+GM+LLVAMIGAIVLTLRHK  VKRQ+IN
Sbjct: 121 KAITAAIPTNVTNTEALGLVLYTKYIHYFQLSGMILLVAMIGAIVLTLRHKVSVKRQDIN 180

Query: 181 VQNARTPEMAMAMRKVASGQGLQDADAAEWVK 212
           VQNARTPEMAMA+RKVA GQGLQD DAAEWVK
Sbjct: 181 VQNARTPEMAMAVRKVAVGQGLQDTDAAEWVK 212


>ref|ZP_01047982.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A]
 gb|EAQ34040.1| NADH dehydrogenase subunit J [Nitrobacter sp. Nb-311A]
          Length = 211

 Score =  356 bits (914), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/212 (85%), Positives = 196/212 (92%), Gaps = 1/212 (0%)

Query: 1   MILPALFFYLFAAVCVASAVMVIVSRNPVHSVLFLILAFVNAAGLFILMGAEFLGMMLIV 60
           MILPA FFYLFA VCVASAVMVI SRNPVHSVLFLILAFVNAAGLFIL+GAEFL M+LIV
Sbjct: 1   MILPA-FFYLFAGVCVASAVMVISSRNPVHSVLFLILAFVNAAGLFILLGAEFLAMILIV 59

Query: 61  VYVGAVAVLFLFVIMMLDVDFVELREGFIQYLPIGIVIGGIFMFELLLVVGAWVINPAVT 120
           VYVGAVAVLFLFVIMMLDVDF ELREGF++YLP G+VI  IF+ ELLLVVG W +NP VT
Sbjct: 60  VYVGAVAVLFLFVIMMLDVDFAELREGFLEYLPFGLVIAAIFLLELLLVVGGWTLNPTVT 119

Query: 121 KTITAAIPTNVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHKAKVKRQNIN 180
           K+ITAAIP +VSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRH+  VKRQ+IN
Sbjct: 120 KSITAAIPGDVSNTEALGLVLYTKYIHYFQLAGMVLLVAMIGAIVLTLRHRVSVKRQDIN 179

Query: 181 VQNARTPEMAMAMRKVASGQGLQDADAAEWVK 212
           VQNARTPEMAM++R+VASGQGLQDAD AEWVK
Sbjct: 180 VQNARTPEMAMSVRQVASGQGLQDADQAEWVK 211