BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0131.p (763 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771546.1| NADH dehydrogenase subunit L [Bradyrhizobium ja... 769 0.0 ref|YP_577461.1| NADH dehydrogenase subunit L [Nitrobacter hambu... 741 0.0 ref|YP_781452.1| NADH dehydrogenase subunit L [Rhodopseudomonas ... 740 0.0 ref|YP_532286.1| NADH dehydrogenase subunit L [Rhodopseudomonas ... 729 0.0 ref|ZP_01047980.1| NADH dehydrogenase subunit L [Nitrobacter sp.... 724 0.0 >ref|NP_771546.1| NADH dehydrogenase subunit L [Bradyrhizobium japonicum USDA 110] dbj|BAC50171.1| NADH ubiquinone oxidoreductase chain L [Bradyrhizobium japonicum USDA 110] Length = 690 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/463 (89%), Positives = 427/463 (92%), Gaps = 1/463 (0%) Query: 1 MVQAIVFLPLLGAILAGIISLVGAHARCPSGDIVDHH-DDAHGDARASAAHDDHGHNDHG 59 MVQAIVFLPLLGAILAG+I+L GAHAR PSGD V+HH D HGDA ASAAHDDHGH+DH Sbjct: 1 MVQAIVFLPLLGAILAGLIALAGAHARNPSGDEVEHHGDHGHGDAHASAAHDDHGHDDHA 60 Query: 60 HDDHHVSEPAAAGSRLAELITTGLLFVSAALSWFTLVDVGFMHHDARVVLLPWITSGDLQ 119 HDDH EPAAAGSR AELITTGLLFVSA LSW TLVDVGFMHHD R+ LLPWI SGDLQ Sbjct: 61 HDDHGPVEPAAAGSRAAELITTGLLFVSAVLSWMTLVDVGFMHHDMRIPLLPWILSGDLQ 120 Query: 120 VAWTLRVDTLTAVMLVVVNTVSALVHLYSIGYMDEDPNRPRFFGYLSLFTFAMLMLVTSD 179 V WTLRVDTLTAVMLVVV TVS+LVHLYSIGYMDEDP RPRFFGYLSLFTFAMLMLVT+D Sbjct: 121 VYWTLRVDTLTAVMLVVVTTVSSLVHLYSIGYMDEDPYRPRFFGYLSLFTFAMLMLVTAD 180 Query: 180 NLVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGFALGIFAIFALVGS 239 NLVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGFALGIFAIF LVGS Sbjct: 181 NLVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGFALGIFAIFMLVGS 240 Query: 240 TDFETIFHAAPGLTGKTINFFGWQAEALTLTCLLLFMGAMGKSAQFLLHTWLPDAMEGPT 299 TDFETIFHAAPGLTGKTINF GW A+ALTLTCLLLFMGAMGKSAQFLLHTWLPDAMEGPT Sbjct: 241 TDFETIFHAAPGLTGKTINFLGWHADALTLTCLLLFMGAMGKSAQFLLHTWLPDAMEGPT 300 Query: 300 PVSALIHAATMVTAGVFMVARLSPLFELSPTAQAVVMFFGATTAFFAATIGLVQNDIKRI 359 PVSALIHAATMVTAGVFMVARLSPLFEL+P AQAVVMFFGATTAFFAATIGLVQNDIKRI Sbjct: 301 PVSALIHAATMVTAGVFMVARLSPLFELAPNAQAVVMFFGATTAFFAATIGLVQNDIKRI 360 Query: 360 VAYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGG 419 VAYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGG Sbjct: 361 VAYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGG 420 Query: 420 LWRKIPYTFAVMCIGTLALTGFPLFAGYFSKXTRRRSRARLRN 462 LW+KIPYT+AVM +GTLALTGFPL AGYFSK S N Sbjct: 421 LWKKIPYTYAVMVVGTLALTGFPLTAGYFSKDAIIESAYASHN 463 >ref|YP_577461.1| NADH dehydrogenase subunit L [Nitrobacter hamburgensis X14] gb|ABE63001.1| NADH dehydrogenase subunit L [Nitrobacter hamburgensis X14] Length = 683 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/462 (83%), Positives = 409/462 (88%), Gaps = 6/462 (1%) Query: 1 MVQAIVFLPLLGAILAGIISLVGAHARCPSGDIVDHHDDAHGDARASAAHDDHGHNDHGH 60 M++AIVFLPL+GAILAG+ISLVGA R P GD VDHHD AHGDA A+ AHD HGH+DH Sbjct: 1 MIEAIVFLPLVGAILAGLISLVGARGRNPGGDTVDHHD-AHGDAHAATAHDSHGHDDH-- 57 Query: 61 DDHHVSEPAAAGSRLAELITTGLLFVSAALSWFTLVDVGFMHHDARVVLLPWITSGDLQV 120 H+SEP AAGSR AELITT LL VSA LSW LVDVGFMHHDAR+ LL WI SGDLQ+ Sbjct: 58 ---HISEPPAAGSRAAELITTILLIVSAGLSWVVLVDVGFMHHDARITLLSWINSGDLQI 114 Query: 121 AWTLRVDTLTAVMLVVVNTVSALVHLYSIGYMDEDPNRPRFFGYLSLFTFAMLMLVTSDN 180 AW+LRVDTLTAVMLVVVNTVSALVH YSIGYMDEDPN PRFFGYLSLFTFAMLMLVTSDN Sbjct: 115 AWSLRVDTLTAVMLVVVNTVSALVHFYSIGYMDEDPNCPRFFGYLSLFTFAMLMLVTSDN 174 Query: 181 LVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGFALGIFAIFALVGST 240 LVQ+FFGWEGVGLASYLLIGFWY+KPSANAAAIKAFVVNR+GDFGF+LGIFA+F L+GS Sbjct: 175 LVQMFFGWEGVGLASYLLIGFWYRKPSANAAAIKAFVVNRIGDFGFSLGIFAVFMLIGSI 234 Query: 241 DFETIFHAAPGLTGKTINFFGWQAEALTLTCLLLFMGAMGKSAQFLLHTWLPDAMEGPTP 300 DF+TIF AAPGLTGKT++F W ALTL CLLLFMGAMGKSAQFLLHTWLPDAMEGPTP Sbjct: 235 DFDTIFSAAPGLTGKTVHFLAWDVNALTLICLLLFMGAMGKSAQFLLHTWLPDAMEGPTP 294 Query: 301 VSALIHAATMVTAGVFMVARLSPLFELSPTAQAVVMFFGATTAFFAATIGLVQNDIKRIV 360 VSALIHAATMVTAGVFMVARLSPLFEL+P AQA VMF GATTAFFAATIGLVQNDIKRI+ Sbjct: 295 VSALIHAATMVTAGVFMVARLSPLFELAPDAQAFVMFIGATTAFFAATIGLVQNDIKRII 354 Query: 361 AYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGGL 420 AYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGGL Sbjct: 355 AYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGGL 414 Query: 421 WRKIPYTFAVMCIGTLALTGFPLFAGYFSKXTRRRSRARLRN 462 +IPYT+ VM IGTL+LTGFPL AGYFSK S N Sbjct: 415 KDRIPYTYFVMVIGTLSLTGFPLMAGYFSKDAVIESAYVSHN 456 >ref|YP_781452.1| NADH dehydrogenase subunit L [Rhodopseudomonas palustris BisA53] gb|ABJ06472.1| proton-translocating NADH-quinone oxidoreductase, chain L [Rhodopseudomonas palustris BisA53] Length = 700 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/480 (79%), Positives = 408/480 (85%), Gaps = 13/480 (2%) Query: 1 MVQAIVFLPLLGAILAGIISLVGAHARCPSGDIVDHH------DDAHGDARASAAHDDH- 53 M+QAIVFLPL+GA+LAG I+L GAHAR PSGD V+H DAH ++D+ Sbjct: 1 MIQAIVFLPLIGALLAGAIALFGAHARHPSGDQVEHDGHSEHGHDAHAPLVVHTSYDEDP 60 Query: 54 -----GHNDHGHDDHHVSEPAAAGSRLAELITTGLLFVSAALSWFTLVDVGFMHHDARVV 108 G +D GH H V PAA GSR AELITTGLL V+A LSW LVDVGF+ HD R+ Sbjct: 61 QVHALGPDDRGHHVHPVEVPAA-GSRAAELITTGLLLVAAGLSWLALVDVGFLKHDIRIA 119 Query: 109 LLPWITSGDLQVAWTLRVDTLTAVMLVVVNTVSALVHLYSIGYMDEDPNRPRFFGYLSLF 168 L PWI SGDLQVAWTLRVDTLTAVMLVVVNT+SALVHLYSIGYM +DP+RPRFF YLSLF Sbjct: 120 LAPWINSGDLQVAWTLRVDTLTAVMLVVVNTISALVHLYSIGYMQDDPHRPRFFAYLSLF 179 Query: 169 TFAMLMLVTSDNLVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGFAL 228 TFAML LVT+DNLVQLFFGWEGVGLASYLLIGFWYQ+PSANAAAIKAF+VNRVGDFGFAL Sbjct: 180 TFAMLTLVTADNLVQLFFGWEGVGLASYLLIGFWYQRPSANAAAIKAFIVNRVGDFGFAL 239 Query: 229 GIFAIFALVGSTDFETIFHAAPGLTGKTINFFGWQAEALTLTCLLLFMGAMGKSAQFLLH 288 GIFAIF LVGSTDFETIF AAPGLTGKTINFFGWQA ALTLTCLLLFMGAMGKSAQFLLH Sbjct: 240 GIFAIFFLVGSTDFETIFAAAPGLTGKTINFFGWQANALTLTCLLLFMGAMGKSAQFLLH 299 Query: 289 TWLPDAMEGPTPVSALIHAATMVTAGVFMVARLSPLFELSPTAQAVVMFFGATTAFFAAT 348 TWLPDAMEGPTPVSALIHAATMVTAGVFMVARLSPLFEL+P AQ VV+FFGATTAFFAAT Sbjct: 300 TWLPDAMEGPTPVSALIHAATMVTAGVFMVARLSPLFELAPDAQNVVLFFGATTAFFAAT 359 Query: 349 IGLVQNDIKRIVAYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAM 408 IGLVQNDIKRIVAYSTCSQLGYMFVAMG GAYSVGMFHLFTHAFFKALLFLG+GSVI+AM Sbjct: 360 IGLVQNDIKRIVAYSTCSQLGYMFVAMGTGAYSVGMFHLFTHAFFKALLFLGAGSVIHAM 419 Query: 409 HHEQDIRNMGGLWRKIPYTFAVMCIGTLALTGFPLFAGYFSKXTRRRSRARLRNTASASA 468 HHEQD+R MGGL KIP+T+ VM IGTLALTGFPL AGYFSK + NT + A Sbjct: 420 HHEQDVRQMGGLKDKIPFTYVVMVIGTLALTGFPLTAGYFSKDAIIEAAFASHNTMAFYA 479 >ref|YP_532286.1| NADH dehydrogenase subunit L [Rhodopseudomonas palustris BisB18] gb|ABD87967.1| proton-translocating NADH-quinone oxidoreductase, chain L [Rhodopseudomonas palustris BisB18] Length = 688 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/457 (83%), Positives = 404/457 (88%), Gaps = 15/457 (3%) Query: 1 MVQAIVFLPLLGAILAGIISLVGAHARCPSGDIVDHHDDAHGDARAS-------AAHDDH 53 M+QAIVFLPL+GA+LA I+L GAHAR PSGD V+H D AHG A + AAHDDH Sbjct: 1 MIQAIVFLPLIGALLAAAIALFGAHARNPSGDTVEH-DAAHGHAAPTGDAAVIHAAHDDH 59 Query: 54 GHNDHGHDDHHVSEPAAAGSRLAELITTGLLFVSAALSWFTLVDVGFMHHDARVVLLPWI 113 GH DH V PA GSR AELITTGLL V+A LSW LVDVGFMHHDAR+ L PWI Sbjct: 60 GH------DHPVETPAV-GSRAAELITTGLLLVAAGLSWLALVDVGFMHHDARIPLFPWI 112 Query: 114 TSGDLQVAWTLRVDTLTAVMLVVVNTVSALVHLYSIGYMDEDPNRPRFFGYLSLFTFAML 173 SGDLQVAW+LRVDTLTAVMLVVVNTVS+LVHLYSIGYM+EDP+RPRFF YLSLFTFAML Sbjct: 113 NSGDLQVAWSLRVDTLTAVMLVVVNTVSSLVHLYSIGYMNEDPHRPRFFAYLSLFTFAML 172 Query: 174 MLVTSDNLVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGFALGIFAI 233 MLVT+DNLVQ+FFGWEGVGLASYLLIGFWYQKP ANAAAIKAFVVNR+GDFGF LGIFAI Sbjct: 173 MLVTADNLVQMFFGWEGVGLASYLLIGFWYQKPEANAAAIKAFVVNRIGDFGFLLGIFAI 232 Query: 234 FALVGSTDFETIFHAAPGLTGKTINFFGWQAEALTLTCLLLFMGAMGKSAQFLLHTWLPD 293 F LVGS DFETIF AAPGLTGKTINFFGW A+ALTLTCL LFMGAMGKSAQFLLHTWLPD Sbjct: 233 FMLVGSIDFETIFAAAPGLTGKTINFFGWHADALTLTCLFLFMGAMGKSAQFLLHTWLPD 292 Query: 294 AMEGPTPVSALIHAATMVTAGVFMVARLSPLFELSPTAQAVVMFFGATTAFFAATIGLVQ 353 AMEGPTPVSALIHAATMVTAGVFMVARLSPLFEL+P AQ VV+FFGATTAFFAATIGLVQ Sbjct: 293 AMEGPTPVSALIHAATMVTAGVFMVARLSPLFELAPDAQNVVIFFGATTAFFAATIGLVQ 352 Query: 354 NDIKRIVAYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQD 413 NDIKRIVAYSTCSQLGYMFVAMG GAYSVGMFHLFTHAFFKALLFLGSGSVI+AMHHEQD Sbjct: 353 NDIKRIVAYSTCSQLGYMFVAMGTGAYSVGMFHLFTHAFFKALLFLGSGSVIHAMHHEQD 412 Query: 414 IRNMGGLWRKIPYTFAVMCIGTLALTGFPLFAGYFSK 450 IR MGGL KIP+T+ VM IGTLALTGFPL AGYFSK Sbjct: 413 IRKMGGLKDKIPFTYIVMVIGTLALTGFPLTAGYFSK 449 >ref|ZP_01047980.1| NADH dehydrogenase subunit L [Nitrobacter sp. Nb-311A] gb|EAQ34038.1| NADH dehydrogenase subunit L [Nitrobacter sp. Nb-311A] Length = 688 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/462 (82%), Positives = 405/462 (87%) Query: 1 MVQAIVFLPLLGAILAGIISLVGAHARCPSGDIVDHHDDAHGDARASAAHDDHGHNDHGH 60 M++AIVFLPL+GAILA +I+LVGAH R PSGD VDHHDD A+A + + HGH Sbjct: 1 MIEAIVFLPLIGAILAALIALVGAHWRNPSGDTVDHHDDHGHAHAAAAHDEHGHGDAHGH 60 Query: 61 DDHHVSEPAAAGSRLAELITTGLLFVSAALSWFTLVDVGFMHHDARVVLLPWITSGDLQV 120 DDHHVSEP A GSR AELITT LL VSA LSW TL+DVGFMHHDAR+ L WI+SGDLQV Sbjct: 61 DDHHVSEPPAMGSRAAELITTTLLIVSAVLSWMTLIDVGFMHHDARIALFSWISSGDLQV 120 Query: 121 AWTLRVDTLTAVMLVVVNTVSALVHLYSIGYMDEDPNRPRFFGYLSLFTFAMLMLVTSDN 180 W+LRVDTLTAVMLVVV TVS+LVH YSIGYMDEDPNRPRFFGYLSLFTFAMLMLVTSDN Sbjct: 121 GWSLRVDTLTAVMLVVVTTVSSLVHFYSIGYMDEDPNRPRFFGYLSLFTFAMLMLVTSDN 180 Query: 181 LVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGFALGIFAIFALVGST 240 LVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGF+LGIFA+F LVGST Sbjct: 181 LVQLFFGWEGVGLASYLLIGFWYQKPSANAAAIKAFVVNRVGDFGFSLGIFAVFMLVGST 240 Query: 241 DFETIFHAAPGLTGKTINFFGWQAEALTLTCLLLFMGAMGKSAQFLLHTWLPDAMEGPTP 300 DF+TIF AA GLTGKTI+F W +ALTL CLLLFMGAMGKSAQFLLHTWLPDAMEGPTP Sbjct: 241 DFDTIFAAATGLTGKTIHFLAWDVDALTLICLLLFMGAMGKSAQFLLHTWLPDAMEGPTP 300 Query: 301 VSALIHAATMVTAGVFMVARLSPLFELSPTAQAVVMFFGATTAFFAATIGLVQNDIKRIV 360 VSALIHAATMVTAGVFMVARLSPLFELSP AQA VMF GATTA FAAT+GLVQNDIKRIV Sbjct: 301 VSALIHAATMVTAGVFMVARLSPLFELSPDAQAFVMFIGATTAIFAATVGLVQNDIKRIV 360 Query: 361 AYSTCSQLGYMFVAMGAGAYSVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGGL 420 AYSTCSQLGYMFVAMGAGAY+VGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGGL Sbjct: 361 AYSTCSQLGYMFVAMGAGAYTVGMFHLFTHAFFKALLFLGSGSVIYAMHHEQDIRNMGGL 420 Query: 421 WRKIPYTFAVMCIGTLALTGFPLFAGYFSKXTRRRSRARLRN 462 +IPYT+ VM IGTLALTGFPL AGYFSK S N Sbjct: 421 KDRIPYTYFVMVIGTLALTGFPLTAGYFSKDAIIESAYVSHN 462