BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0128.p (478 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771544.1| NADH dehydrogenase subunit N [Bradyrhizobium ja... 810 0.0 ref|YP_570001.1| NADH dehydrogenase subunit N [Rhodopseudomonas ... 766 0.0 ref|YP_486201.1| NADH dehydrogenase subunit N [Rhodopseudomonas ... 758 0.0 ref|YP_577459.1| NADH dehydrogenase subunit N [Nitrobacter hambu... 752 0.0 ref|YP_318486.1| NADH dehydrogenase subunit N [Nitrobacter winog... 748 0.0 >ref|NP_771544.1| NADH dehydrogenase subunit N [Bradyrhizobium japonicum USDA 110] dbj|BAC50169.1| NADH ubiquinone oxidoreductase chain N [Bradyrhizobium japonicum USDA 110] Length = 478 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/478 (86%), Positives = 449/478 (93%) Query: 1 MSFSSAGYQLQPVLPELVLAVGAMVLLMIGAYRGQGTTRLVTALAICLLVLTGVLELWLP 60 MSF +AGYQL PVLPELVLAVGAM LLM+GAYRGQ TT+ VT LAI LL++ GVLE LP Sbjct: 1 MSFETAGYQLAPVLPELVLAVGAMALLMLGAYRGQETTKTVTTLAILLLIVVGVLEYMLP 60 Query: 61 AGKLVTFGGSFIVDDFARFLKVLALIASAATLILSTEYLSQPSSRNFEFSILVLLSTLGM 120 AGK VTFGGSFIVDDFARF+K+LALI SA TL+LSTE+LS PS R FE++ILVLLSTLGM Sbjct: 61 AGKQVTFGGSFIVDDFARFMKILALIGSAVTLVLSTEFLSDPSRRIFEYAILVLLSTLGM 120 Query: 121 MVLISAGDLISLYLGLELMSLALYVVAASQRDNAKSSEAGLKYFVLGALSSGMLLYGASL 180 MVLISAGDLISLYLGLELMSLALYVVA+S RDNAKS+EAGLKYFVLGALSSGMLLYG+SL Sbjct: 121 MVLISAGDLISLYLGLELMSLALYVVASSNRDNAKSTEAGLKYFVLGALSSGMLLYGSSL 180 Query: 181 IYGFTGTVSFAGIAAAATTGSIGIVFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT 240 +YGFTGTVSF GIAA ATT ++G+VFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT Sbjct: 181 VYGFTGTVSFTGIAATATTANVGLVFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT 240 Query: 241 AFFASAPKVAALAVFTRATLTAFPGIVTQWQQILVFVAIASMALGSFAAIGQTNIKRLMA 300 AFFASAPKVAALAVFTR TLTAFPGIV+QWQQILVFVAIASMALGSFAAIGQ+NIKRLMA Sbjct: 241 AFFASAPKVAALAVFTRVTLTAFPGIVSQWQQILVFVAIASMALGSFAAIGQSNIKRLMA 300 Query: 301 YSSIGHMGFALVGLASGTVEGAQGVLIYIAIYVAMTLGSFSIILAMKRNGQALEQISDFA 360 YSSIGHMGFALVGLASGTVEGAQGVL+YI IYVAMTLGSFSIILAMKRNGQA+EQISDFA Sbjct: 301 YSSIGHMGFALVGLASGTVEGAQGVLMYIVIYVAMTLGSFSIILAMKRNGQAVEQISDFA 360 Query: 361 GLSRTNPLLAFIFAMLLFSLAGVPPLAGFFGKWYVFVAAIKANLFTLAVIGVLTSVVGAF 420 GLSRTNPLLAF+FAMLLFSLAG+PPLAGFF KWYVFVAAIKANLFTLAVIGVL+SVVGA+ Sbjct: 361 GLSRTNPLLAFMFAMLLFSLAGIPPLAGFFAKWYVFVAAIKANLFTLAVIGVLSSVVGAY 420 Query: 421 YYLSIVKVMYFDQPLGKLDPVRVELRTVLAVAGIFNIFYFAYPGPLVSVATAAAKSLF 478 YYL+IVK MYFD+P G++DPVRVE++TVLAVAG+FNI + + GP+VSVA+AAAKSLF Sbjct: 421 YYLAIVKTMYFDEPAGQVDPVRVEVKTVLAVAGLFNILFALFAGPVVSVASAAAKSLF 478 >ref|YP_570001.1| NADH dehydrogenase subunit N [Rhodopseudomonas palustris BisB5] gb|ABE40100.1| Proton-translocating NADH-quinone oxidoreductase, chain N [Rhodopseudomonas palustris BisB5] Length = 478 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/478 (80%), Positives = 433/478 (90%) Query: 1 MSFSSAGYQLQPVLPELVLAVGAMVLLMIGAYRGQGTTRLVTALAICLLVLTGVLELWLP 60 M+F +AGY LQP++PELVL +GAM+LLM+GAYRG+ TT L+T LA+ LLV TG LEL LP Sbjct: 1 MNFETAGYSLQPIMPELVLVIGAMLLLMLGAYRGERTTGLITTLAVLLLVATGALELMLP 60 Query: 61 AGKLVTFGGSFIVDDFARFLKVLALIASAATLILSTEYLSQPSSRNFEFSILVLLSTLGM 120 AGKLVTFGGSFIVDDFARFLKVLALI SA TLILS E LS PS R FE++ILVLLS+ GM Sbjct: 61 AGKLVTFGGSFIVDDFARFLKVLALIGSAVTLILSAEILSNPSRRIFEYAILVLLSSAGM 120 Query: 121 MVLISAGDLISLYLGLELMSLALYVVAASQRDNAKSSEAGLKYFVLGALSSGMLLYGASL 180 M+LISAGDLI LYLGLELMSLALYVVAAS R++AKS+EAG+KYFVLGALSSGMLLYGASL Sbjct: 121 MLLISAGDLIMLYLGLELMSLALYVVAASNREDAKSNEAGMKYFVLGALSSGMLLYGASL 180 Query: 181 IYGFTGTVSFAGIAAAATTGSIGIVFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT 240 IYGFTGTV FAGIAAAA GS+G+VFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT Sbjct: 181 IYGFTGTVQFAGIAAAAKDGSVGLVFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT 240 Query: 241 AFFASAPKVAALAVFTRATLTAFPGIVTQWQQILVFVAIASMALGSFAAIGQTNIKRLMA 300 AFFASAPKVA LAVFTR TLTAFPGIV QWQQI+VFVAIASMALGSFAAIGQ NIKRLMA Sbjct: 241 AFFASAPKVAGLAVFTRVTLTAFPGIVPQWQQIVVFVAIASMALGSFAAIGQKNIKRLMA 300 Query: 301 YSSIGHMGFALVGLASGTVEGAQGVLIYIAIYVAMTLGSFSIILAMKRNGQALEQISDFA 360 YS+IGH+GFALVGL++GTVEGAQGV+IYI+IYVAMTLG+F++ILAM+RNG +E ISDFA Sbjct: 301 YSAIGHIGFALVGLSAGTVEGAQGVIIYISIYVAMTLGAFAVILAMRRNGLHVENISDFA 360 Query: 361 GLSRTNPLLAFIFAMLLFSLAGVPPLAGFFGKWYVFVAAIKANLFTLAVIGVLTSVVGAF 420 GLSRT P LAF FAMLLFS+AG+PPLAGFF K+YVF+AAIKA LF LAVIGV+TSVVGA+ Sbjct: 361 GLSRTKPALAFFFAMLLFSMAGIPPLAGFFAKFYVFMAAIKAGLFALAVIGVVTSVVGAY 420 Query: 421 YYLSIVKVMYFDQPLGKLDPVRVELRTVLAVAGIFNIFYFAYPGPLVSVATAAAKSLF 478 YYL+I+KVMYFD+P +DP+R+ELR VL +AG+FN+ +F YP PLV+ ATAAAKSLF Sbjct: 421 YYLAIIKVMYFDEPAPGVDPMRLELRGVLVIAGLFNMLFFIYPAPLVNAATAAAKSLF 478 >ref|YP_486201.1| NADH dehydrogenase subunit N [Rhodopseudomonas palustris HaA2] gb|ABD07290.1| Proton-translocating NADH-quinone oxidoreductase, chain N [Rhodopseudomonas palustris HaA2] Length = 478 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/478 (79%), Positives = 432/478 (90%) Query: 1 MSFSSAGYQLQPVLPELVLAVGAMVLLMIGAYRGQGTTRLVTALAICLLVLTGVLELWLP 60 M+F +AGY L P++PELVL +G+M+LLM+GAY GQ TT LVT LA+ LLVLTG LEL LP Sbjct: 1 MNFETAGYSLLPIMPELVLVIGSMLLLMVGAYGGQRTTGLVTTLAVALLVLTGALELMLP 60 Query: 61 AGKLVTFGGSFIVDDFARFLKVLALIASAATLILSTEYLSQPSSRNFEFSILVLLSTLGM 120 AG+LVTFGGSFIVDDFARFLKVLALI SA TLILS+E +S PS R FE+SILVLLS++GM Sbjct: 61 AGRLVTFGGSFIVDDFARFLKVLALIGSAVTLILSSEIMSNPSRRMFEYSILVLLSSVGM 120 Query: 121 MVLISAGDLISLYLGLELMSLALYVVAASQRDNAKSSEAGLKYFVLGALSSGMLLYGASL 180 M+LISAGDLI LYLGLELMSLALYVVAAS R++AKS+EAG+KYF+LGALSSGMLLYG SL Sbjct: 121 MLLISAGDLIMLYLGLELMSLALYVVAASNREDAKSNEAGMKYFILGALSSGMLLYGCSL 180 Query: 181 IYGFTGTVSFAGIAAAATTGSIGIVFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT 240 IYGFTGTV FAGIAAAA GSIG++FGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT Sbjct: 181 IYGFTGTVQFAGIAAAAKDGSIGLIFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT 240 Query: 241 AFFASAPKVAALAVFTRATLTAFPGIVTQWQQILVFVAIASMALGSFAAIGQTNIKRLMA 300 AFFASAPKVA LAVFTR TLTAFP IV QWQQI+VFVAIASMALGSFAAIGQ NIKRLMA Sbjct: 241 AFFASAPKVAGLAVFTRVTLTAFPEIVPQWQQIVVFVAIASMALGSFAAIGQKNIKRLMA 300 Query: 301 YSSIGHMGFALVGLASGTVEGAQGVLIYIAIYVAMTLGSFSIILAMKRNGQALEQISDFA 360 YS+IGH+GFALVGL++GTVEGAQGV++YI+IYVAMTLG+FS+ILAM+RNG +E ISDFA Sbjct: 301 YSAIGHIGFALVGLSAGTVEGAQGVIVYISIYVAMTLGAFSVILAMRRNGLHVENISDFA 360 Query: 361 GLSRTNPLLAFIFAMLLFSLAGVPPLAGFFGKWYVFVAAIKANLFTLAVIGVLTSVVGAF 420 GLSRTNP LAF FAMLLFS+AG+PPLAGFF K+YVF+AAIKA LF LAVIGV+TSVVGA+ Sbjct: 361 GLSRTNPALAFFFAMLLFSMAGIPPLAGFFAKFYVFMAAIKAGLFALAVIGVVTSVVGAY 420 Query: 421 YYLSIVKVMYFDQPLGKLDPVRVELRTVLAVAGIFNIFYFAYPGPLVSVATAAAKSLF 478 YYL I+KVMYFD+P +D +R+ELR VLAVAG+FN+ +F YP PLV+ A+AAAKSLF Sbjct: 421 YYLLIIKVMYFDEPAPGIDRMRLELRGVLAVAGLFNMLFFLYPAPLVNAASAAAKSLF 478 >ref|YP_577459.1| NADH dehydrogenase subunit N [Nitrobacter hamburgensis X14] gb|ABE62999.1| NADH dehydrogenase subunit N [Nitrobacter hamburgensis X14] Length = 478 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/478 (78%), Positives = 422/478 (88%) Query: 1 MSFSSAGYQLQPVLPELVLAVGAMVLLMIGAYRGQGTTRLVTALAICLLVLTGVLELWLP 60 M F +AGYQL PVLPE+VLA+GAM LL IGA+ GQ LVT LA+CLLV TGV+E LP Sbjct: 1 MMFEAAGYQLLPVLPEIVLAIGAMALLTIGAWCGQRAAALVTVLAVCLLVATGVIEYLLP 60 Query: 61 AGKLVTFGGSFIVDDFARFLKVLALIASAATLILSTEYLSQPSSRNFEFSILVLLSTLGM 120 GKL+TFGGSFIVDDFARFLK+LAL+ SAATL+LS ++L S R FEF+ILV+LST+GM Sbjct: 61 RGKLITFGGSFIVDDFARFLKILALLGSAATLVLSRQFLENQSRRMFEFAILVMLSTVGM 120 Query: 121 MVLISAGDLISLYLGLELMSLALYVVAASQRDNAKSSEAGLKYFVLGALSSGMLLYGASL 180 MVLISA DLI LYLGLELMSLALYVVAAS RDN KS+EAGLKYFVLGAL+SGMLLYGASL Sbjct: 121 MVLISAADLIMLYLGLELMSLALYVVAASDRDNVKSTEAGLKYFVLGALASGMLLYGASL 180 Query: 181 IYGFTGTVSFAGIAAAATTGSIGIVFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT 240 IYGFTGTVSFAGIAAAA TGSIG+VFG+VFLLAGLCFKVS VPFHMWTPDVYEGAPTPVT Sbjct: 181 IYGFTGTVSFAGIAAAAKTGSIGVVFGIVFLLAGLCFKVSVVPFHMWTPDVYEGAPTPVT 240 Query: 241 AFFASAPKVAALAVFTRATLTAFPGIVTQWQQILVFVAIASMALGSFAAIGQTNIKRLMA 300 AFF+SAPKVAA+AVFTR LTAF G+VT+WQQI+VFVAIASMALGSF AIGQ NIKR+MA Sbjct: 241 AFFSSAPKVAAMAVFTRVVLTAFSGVVTEWQQIVVFVAIASMALGSFGAIGQRNIKRMMA 300 Query: 301 YSSIGHMGFALVGLASGTVEGAQGVLIYIAIYVAMTLGSFSIILAMKRNGQALEQISDFA 360 YSSIGHMGFALVGLA+GTVEGAQGV++Y+ IY MT G+F++ILAM R GQALEQISDFA Sbjct: 301 YSSIGHMGFALVGLAAGTVEGAQGVVLYMVIYTVMTFGAFTVILAMSRKGQALEQISDFA 360 Query: 361 GLSRTNPLLAFIFAMLLFSLAGVPPLAGFFGKWYVFVAAIKANLFTLAVIGVLTSVVGAF 420 GLSRTNPLLAF FAMLLFSLAG+PPLAGFF K+YVF AAIKA L L+VIGV+TSVVGAF Sbjct: 361 GLSRTNPLLAFFFAMLLFSLAGIPPLAGFFAKFYVFTAAIKAGLVALSVIGVITSVVGAF 420 Query: 421 YYLSIVKVMYFDQPLGKLDPVRVELRTVLAVAGIFNIFYFAYPGPLVSVATAAAKSLF 478 YYL+++KVMYFD+ D V +ELR+V+AV +FN+ +FAYPGPLVS ATAAAKSLF Sbjct: 421 YYLNVIKVMYFDERDEATDAVHIELRSVVAVTALFNMLFFAYPGPLVSAATAAAKSLF 478 >ref|YP_318486.1| NADH dehydrogenase subunit N [Nitrobacter winogradskyi Nb-255] gb|ABA05134.1| NADH dehydrogenase subunit N [Nitrobacter winogradskyi Nb-255] Length = 478 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/478 (78%), Positives = 422/478 (88%) Query: 1 MSFSSAGYQLQPVLPELVLAVGAMVLLMIGAYRGQGTTRLVTALAICLLVLTGVLELWLP 60 M F +AGYQL PVLPE+ LAVGAMVLL+IGA+ GQ LVT LAICLL+ GV+E LP Sbjct: 1 MMFEAAGYQLLPVLPEVALAVGAMVLLLIGAWCGQRAAGLVTGLAICLLIGAGVIEYLLP 60 Query: 61 AGKLVTFGGSFIVDDFARFLKVLALIASAATLILSTEYLSQPSSRNFEFSILVLLSTLGM 120 +GKLVTFGGSFIVDDFARFLK+LAL+ SAATL+LS E+L S R FEF+ILV+LST+GM Sbjct: 61 SGKLVTFGGSFIVDDFARFLKILALLGSAATLVLSREFLQDQSRRMFEFAILVMLSTVGM 120 Query: 121 MVLISAGDLISLYLGLELMSLALYVVAASQRDNAKSSEAGLKYFVLGALSSGMLLYGASL 180 MVLISA DLI LYLGLELMSLALYVVAAS RDN KS+EAGLKYFVLGAL+SGMLLYGASL Sbjct: 121 MVLISAADLIMLYLGLELMSLALYVVAASNRDNVKSTEAGLKYFVLGALASGMLLYGASL 180 Query: 181 IYGFTGTVSFAGIAAAATTGSIGIVFGLVFLLAGLCFKVSAVPFHMWTPDVYEGAPTPVT 240 IYGFTGTVSFAGIAAAA +GSIG+VFG+VFLLAGLCFKVS VPFHMWTPDVYEGAPTPVT Sbjct: 181 IYGFTGTVSFAGIAAAAKSGSIGVVFGIVFLLAGLCFKVSVVPFHMWTPDVYEGAPTPVT 240 Query: 241 AFFASAPKVAALAVFTRATLTAFPGIVTQWQQILVFVAIASMALGSFAAIGQTNIKRLMA 300 AFFASAPK+AA+AVFTR LTAF G+V +WQQI+VFVAIASMALGSF AIGQ NIKRLMA Sbjct: 241 AFFASAPKIAAMAVFTRVVLTAFSGVVAEWQQIVVFVAIASMALGSFGAIGQRNIKRLMA 300 Query: 301 YSSIGHMGFALVGLASGTVEGAQGVLIYIAIYVAMTLGSFSIILAMKRNGQALEQISDFA 360 YSSIGHMGFALVGLA+GTVEGAQGV++Y+ IY MT G+F++ILAM RNGQ LEQISDFA Sbjct: 301 YSSIGHMGFALVGLAAGTVEGAQGVVLYLVIYTVMTFGAFTVILAMSRNGQPLEQISDFA 360 Query: 361 GLSRTNPLLAFIFAMLLFSLAGVPPLAGFFGKWYVFVAAIKANLFTLAVIGVLTSVVGAF 420 GLSRTNPLLAF FAMLLFSLAG+PPLAGFF K+YVF AAIKA LF L+VIGV+TSVVGAF Sbjct: 361 GLSRTNPLLAFCFAMLLFSLAGIPPLAGFFAKFYVFSAAIKAGLFALSVIGVITSVVGAF 420 Query: 421 YYLSIVKVMYFDQPLGKLDPVRVELRTVLAVAGIFNIFYFAYPGPLVSVATAAAKSLF 478 YYL+++KVMYFD+ D V +ELR+++A +FN+ +FAYPGPLVS ATAAAKSLF Sbjct: 421 YYLNVIKVMYFDERAEATDAVHLELRSIVAATALFNMLFFAYPGPLVSAATAAAKSLF 478