BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0118.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773083.1| ABC transporter permease protein [Bradyrhizobiu... 493 e-137 ref|NP_947085.1| branched chain amino acid ABC transporter perme... 473 e-131 ref|YP_001771527.1| inner-membrane translocator [Methylobacteriu... 434 e-119 ref|YP_002495418.1| inner-membrane translocator [Methylobacteriu... 432 e-119 ref|YP_001205829.1| branched chain amino acid ABC transporter pe... 419 e-115 >ref|NP_773083.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51708.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 265/291 (91%), Positives = 276/291 (94%) Query: 1 MLALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAAASVLHLDI 60 M A QILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAAAS+L++ Sbjct: 1 MRAFQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAAASILNVGT 60 Query: 61 YTGALFGVGVALIVSFATYFAVVKPIQNSRRIPNEEKEIFVLTGTLLWGIMIQELIAYFF 120 Y GAL GV VAL+ +FATYFAVVKPIQ+SRRIPNEEKEIFVLTGTLLWGIMIQELIAYFF Sbjct: 61 YAGALIGVAVALLTAFATYFAVVKPIQDSRRIPNEEKEIFVLTGTLLWGIMIQELIAYFF 120 Query: 121 TNNAKTVLPIVEGVVEIFGNRTPRNNIFTALVCCLVIGLLWLLVNRTRTGKAVLAASMNP 180 TNNAKTVLPIVEGVVEI G RTP+N IFTA+VCCLVI LLWLLVNRTRTGKAVLAASMNP Sbjct: 121 TNNAKTVLPIVEGVVEILGVRTPKNEIFTAIVCCLVIALLWLLVNRTRTGKAVLAASMNP 180 Query: 181 RGVTLLGLELTQIYIVVWGIYGILAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG 240 RGVTLLGLELT I IVVW IYGILAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG Sbjct: 181 RGVTLLGLELTNINIVVWAIYGILAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG 240 Query: 241 SVSGSLIAAFVVGYLETITAYMISPAYRTIPALLLLVFVMYIRPQGLLGRR 291 SVSGSLIAAFVVGYLET+TAY++SPAYRTIPALLLLVFVMYIRPQGLLGRR Sbjct: 241 SVSGSLIAAFVVGYLETLTAYLVSPAYRTIPALLLLVFVMYIRPQGLLGRR 291 >ref|NP_947085.1| branched chain amino acid ABC transporter permease [Rhodopseudomonas palustris CGA009] ref|YP_001990938.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] emb|CAE27181.1| possible branched-chain amino acid transport system permease protein [Rhodopseudomonas palustris CGA009] gb|ACF00463.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] Length = 291 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 255/291 (87%), Positives = 267/291 (91%) Query: 1 MLALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAAASVLHLDI 60 MLALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAA+S + Sbjct: 1 MLALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAASSTFGIGS 60 Query: 61 YTGALFGVGVALIVSFATYFAVVKPIQNSRRIPNEEKEIFVLTGTLLWGIMIQELIAYFF 120 Y GAL G+ AL+++ TYFAVV+PIQ SRRI NEEKEIFVLTGTLLWGIMIQE IAYFF Sbjct: 61 YAGALIGIATALVIALLTYFAVVQPIQRSRRIANEEKEIFVLTGTLLWGIMIQEAIAYFF 120 Query: 121 TNNAKTVLPIVEGVVEIFGNRTPRNNIFTALVCCLVIGLLWLLVNRTRTGKAVLAASMNP 180 TNNAKTVLPIV GVVEI G RTPRN IFTALVCCLVI LLWLLVNRT+ GKAVLAASMNP Sbjct: 121 TNNAKTVLPIVTGVVEILGVRTPRNEIFTALVCCLVIALLWLLVNRTKIGKAVLAASMNP 180 Query: 181 RGVTLLGLELTQIYIVVWGIYGILAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG 240 RGVTLLGLELT IY+VVW IYG+LAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG Sbjct: 181 RGVTLLGLELTNIYVVVWIIYGVLAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG 240 Query: 241 SVSGSLIAAFVVGYLETITAYMISPAYRTIPALLLLVFVMYIRPQGLLGRR 291 SVSGSLIAAFVVGYLET TAYMISPAYR+IPALLLLV VMY+RPQGLLGRR Sbjct: 241 SVSGSLIAAFVVGYLETFTAYMISPAYRSIPALLLLVTVMYLRPQGLLGRR 291 >ref|YP_001771527.1| inner-membrane translocator [Methylobacterium sp. 4-46] gb|ACA19093.1| inner-membrane translocator [Methylobacterium sp. 4-46] Length = 291 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/291 (80%), Positives = 253/291 (86%) Query: 1 MLALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAAASVLHLDI 60 M ALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGA+MV AAV AWAA+S L Sbjct: 1 MTALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGALMVTAAVVAWAASSEYGLGA 60 Query: 61 YTGALFGVGVALIVSFATYFAVVKPIQNSRRIPNEEKEIFVLTGTLLWGIMIQELIAYFF 120 Y GA GV V +++ ATY VVKPI S+ IP EEKEIF+LTGTLLWGIMIQE IAY F Sbjct: 61 YAGAATGVAVCTLLTLATYGVVVKPIDRSKAIPAEEKEIFILTGTLLWGIMIQEFIAYLF 120 Query: 121 TNNAKTVLPIVEGVVEIFGNRTPRNNIFTALVCCLVIGLLWLLVNRTRTGKAVLAASMNP 180 T+NAKTV+PIVEGVV I G RTP N IFTALVC I LLW+LVNRTRTGK VLAASMNP Sbjct: 121 TSNAKTVMPIVEGVVTIAGVRTPWNQIFTALVCWGTIALLWVLVNRTRTGKVVLAASMNP 180 Query: 181 RGVTLLGLELTQIYIVVWGIYGILAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG 240 RGVTLLG EL++IY+ +W IYG+LAGIAGVLLG FLGVSSYSVGPLTASAFSIVVLGGLG Sbjct: 181 RGVTLLGFELSKIYVAIWAIYGVLAGIAGVLLGQFLGVSSYSVGPLTASAFSIVVLGGLG 240 Query: 241 SVSGSLIAAFVVGYLETITAYMISPAYRTIPALLLLVFVMYIRPQGLLGRR 291 SVSGSLIAA+VVGYLETITAY+ISPAYRTIPALLLLV VMY+RPQGLLGRR Sbjct: 241 SVSGSLIAAYVVGYLETITAYLISPAYRTIPALLLLVAVMYVRPQGLLGRR 291 >ref|YP_002495418.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060] gb|ACL55115.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060] Length = 291 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/291 (80%), Positives = 254/291 (87%) Query: 1 MLALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAAASVLHLDI 60 M A+QILIDGFAISALYALGATGFTLIFGVSGVLNLSHGA+MV AAV AWAA+S L L Sbjct: 1 MTAIQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGALMVTAAVVAWAASSELGLGS 60 Query: 61 YTGALFGVGVALIVSFATYFAVVKPIQNSRRIPNEEKEIFVLTGTLLWGIMIQELIAYFF 120 Y GA GV V +++ ATY VVKPI S+ IP EEKEIF+LTGTLLWGIMIQE IAY F Sbjct: 61 YAGAAVGVAVCTLLTLATYGIVVKPIDRSKAIPAEEKEIFILTGTLLWGIMIQEFIAYLF 120 Query: 121 TNNAKTVLPIVEGVVEIFGNRTPRNNIFTALVCCLVIGLLWLLVNRTRTGKAVLAASMNP 180 T+NAKTV+PIVEGVV I G RTP N IFTA+VC I LLWLLVNRTRTGK VLAASMNP Sbjct: 121 TSNAKTVMPIVEGVVTIAGVRTPWNQIFTAVVCWGTIALLWLLVNRTRTGKVVLAASMNP 180 Query: 181 RGVTLLGLELTQIYIVVWGIYGILAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG 240 RGVTLLG EL++IY+ +W IYG+LAGIAGVLLG FLGVSSYSVGPLTASAFSIVVLGGLG Sbjct: 181 RGVTLLGFELSKIYVAIWLIYGVLAGIAGVLLGQFLGVSSYSVGPLTASAFSIVVLGGLG 240 Query: 241 SVSGSLIAAFVVGYLETITAYMISPAYRTIPALLLLVFVMYIRPQGLLGRR 291 SVSGSLIAA+VVGYLETITAY+ISPAYRTIPALLLLV VMY+RPQGLLGRR Sbjct: 241 SVSGSLIAAYVVGYLETITAYLISPAYRTIPALLLLVAVMYVRPQGLLGRR 291 >ref|YP_001205829.1| branched chain amino acid ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL77604.1| Putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein [Bradyrhizobium sp. ORS 278] Length = 291 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 233/291 (80%), Positives = 255/291 (87%) Query: 1 MLALQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVAAAVAAWAAASVLHLDI 60 ML QILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMV AAVAAWAAA L + Sbjct: 1 MLFWQILIDGFAISALYALGATGFTLIFGVSGVLNLSHGAIMVGAAVAAWAAAGELGVGP 60 Query: 61 YTGALFGVGVALIVSFATYFAVVKPIQNSRRIPNEEKEIFVLTGTLLWGIMIQELIAYFF 120 YTGAL GV L+++FATYF V+PIQ S+ I EKEIF+LT TLLWGI+IQE IAYFF Sbjct: 61 YTGALIGVLAGLVLAFATYFIAVRPIQLSKAIAESEKEIFILTATLLWGIIIQEAIAYFF 120 Query: 121 TNNAKTVLPIVEGVVEIFGNRTPRNNIFTALVCCLVIGLLWLLVNRTRTGKAVLAASMNP 180 TNNAKTVLPIVEGV +FG RTPRN FTA++C + IGLLW LVNRTR GKAV+AASMNP Sbjct: 121 TNNAKTVLPIVEGVTTVFGVRTPRNEYFTAVICWVAIGLLWFLVNRTRRGKAVMAASMNP 180 Query: 181 RGVTLLGLELTQIYIVVWGIYGILAGIAGVLLGMFLGVSSYSVGPLTASAFSIVVLGGLG 240 RGVTLLG+EL+ IY+ VW IYG+LAG+AG+LLGMFLGVSSYSVGPLTASAFSIVVLGGLG Sbjct: 181 RGVTLLGIELSSIYLTVWAIYGLLAGVAGILLGMFLGVSSYSVGPLTASAFSIVVLGGLG 240 Query: 241 SVSGSLIAAFVVGYLETITAYMISPAYRTIPALLLLVFVMYIRPQGLLGRR 291 SVSGSLIAA+VVGYLET TAY+ISPAYRTIPALLLLV VMY+RPQGL GRR Sbjct: 241 SVSGSLIAAYVVGYLETGTAYLISPAYRTIPALLLLVVVMYLRPQGLFGRR 291