BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0115.p (413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773086.1| ABC transporter substrate-binding protein [Brad... 736 0.0 ref|NP_947086.1| branched chain amino-acid ABC transporter subst... 587 e-165 ref|YP_002495417.1| extracellular ligand-binding receptor [Methy... 581 e-164 ref|YP_001771523.1| extracellular ligand-binding receptor [Methy... 572 e-161 ref|YP_004110088.1| extracellular ligand-binding receptor [Rhodo... 562 e-158 >ref|NP_773086.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51711.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 412 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/386 (90%), Positives = 373/386 (96%) Query: 28 QSKDPIKIGIIAEVQSIAGAATPGGAQIAADEINAKGGVMGRKIEIVTYDNKSSSADSVR 87 QS DPIKIG+IAEVQSIAGAATPGGAQIAADEINAKGG++GRK+EIVTYDNKSSSADSVR Sbjct: 27 QSNDPIKIGVIAEVQSIAGAATPGGAQIAADEINAKGGILGRKVEIVTYDNKSSSADSVR 86 Query: 88 AFQRAVSEDKVSAVIASYISEVVLALEPWASRLKMPLITPGAASNEITKAVHNDYEKNKY 147 AFQRAVSEDKVSAVIASYISEVVLALEPWA+RLKMPLITPGAASNEITKA+HNDYEKNKY Sbjct: 87 AFQRAVSEDKVSAVIASYISEVVLALEPWAARLKMPLITPGAASNEITKAIHNDYEKNKY 146 Query: 148 TFHGYLTSAAQAQLVCDAAKELLVDQLKFKSVAIMSEDAAWTKPLDVGYEACLPKAGLKV 207 TFHGYLTSAAQAQLVCDAAK+LLVD+LKFK+VAIMSEDAAWTKPLDVGYEACLPKAGLKV Sbjct: 147 TFHGYLTSAAQAQLVCDAAKDLLVDKLKFKTVAIMSEDAAWTKPLDVGYEACLPKAGLKV 206 Query: 208 VEHIRFSPDTTDFTPIFNKMEAAKPDVIVTGISHVGVQPTVQWKNQQVPIPMFGISAQAL 267 VEH+RFSPDTTDFTPIFN +E KPDVIVTGISHVGVQPTVQWKNQQVPIPMFGISAQAL Sbjct: 207 VEHVRFSPDTTDFTPIFNNIEGKKPDVIVTGISHVGVQPTVQWKNQQVPIPMFGISAQAL 266 Query: 268 SPTFWGDTNGAAEGVPSLAVATPDVAVTPKTKPFAAAFKAKFGTPPAYTGYTAYDEVYII 327 SPTFW DTNGAA+G+PSLAVATPDVAVT KTKPFAAAFKAKFG+PPAYTGYTAYDEVY I Sbjct: 267 SPTFWKDTNGAADGIPSLAVATPDVAVTSKTKPFAAAFKAKFGSPPAYTGYTAYDEVYFI 326 Query: 328 AEAIQRAGSTDPDKMVTELEKTDFEGTIGKIQFYGKNDEFTHGIKSGPGAVTGLVFQWQG 387 EAI+RAGSTDPDKMV E+EKTD+EGTIG+IQFYGK+DEFTHGIKSGPGAVTGLVFQWQ Sbjct: 327 TEAIKRAGSTDPDKMVAEIEKTDYEGTIGRIQFYGKDDEFTHGIKSGPGAVTGLVFQWQD 386 Query: 388 GKQITVWPKAIAEGQMKFPNFVKLSQ 413 KQ+ VWP+ IAEG++KFPNFVKLSQ Sbjct: 387 SKQVVVWPEKIAEGKLKFPNFVKLSQ 412 >ref|NP_947086.1| branched chain amino-acid ABC transporter substrate-binding protein [Rhodopseudomonas palustris CGA009] ref|YP_001990939.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] emb|CAE27182.1| possible branched-chain amino acid transport system substrate-binding protein [Rhodopseudomonas palustris CGA009] gb|ACF00464.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 416 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 282/406 (69%), Positives = 336/406 (82%), Gaps = 3/406 (0%) Query: 5 STATRVSLLASALALCLAAPAYAQSKDPIKIGIIAEVQSIAGAATPGGAQIAADEINAKG 64 S + R + A+A+ ++ A + DPIKIG+IAE Q+IAGA+ P AQ+AA+EINAKG Sbjct: 10 SWSMRAVVAATAIGFGASS---ALAADPIKIGVIAEAQAIAGASIPQAAQLAAEEINAKG 66 Query: 65 GVMGRKIEIVTYDNKSSSADSVRAFQRAVSEDKVSAVIASYISEVVLALEPWASRLKMPL 124 G+ GRKIEIV+YDN SSSADSVRAFQRAV+EDKV+AVIASYISEVVLAL PWASRLK P Sbjct: 67 GIDGRKIEIVSYDNHSSSADSVRAFQRAVNEDKVNAVIASYISEVVLALMPWASRLKTPF 126 Query: 125 ITPGAASNEITKAVHNDYEKNKYTFHGYLTSAAQAQLVCDAAKELLVDQLKFKSVAIMSE 184 +TPGAASNEITKA++ DYEKNKYTFHGYLTS AQ VCDAAK+LLVD + KS IMSE Sbjct: 127 VTPGAASNEITKAINKDYEKNKYTFHGYLTSGELAQSVCDAAKDLLVDARQMKSAVIMSE 186 Query: 185 DAAWTKPLDVGYEACLPKAGLKVVEHIRFSPDTTDFTPIFNKMEAAKPDVIVTGISHVGV 244 DAAWTKPLDVGY+ CLPK GLKV++HIRFSPDTTDFTPIFNK+E +KPDVI+TGISHVGV Sbjct: 187 DAAWTKPLDVGYQECLPKVGLKVLDHIRFSPDTTDFTPIFNKIEGSKPDVIITGISHVGV 246 Query: 245 QPTVQWKNQQVPIPMFGISAQALSPTFWGDTNGAAEGVPSLAVATPDVAVTPKTKPFAAA 304 QPTVQWKNQQVPIPMFGI++QA + TF DTN A++GV V+ P VAVT K+ PFA Sbjct: 247 QPTVQWKNQQVPIPMFGIASQATNETFGKDTNNASDGVLYQGVSGPGVAVTSKSVPFAEN 306 Query: 305 FKAKFGTPPAYTGYTAYDEVYIIAEAIQRAGSTDPDKMVTELEKTDFEGTIGKIQFYGKN 364 FK K+G P+Y GYTAYDEVY IAEA++RAGSTD +K+V LEKTD+EGTIG++QFYGK+ Sbjct: 307 FKKKYGNYPSYAGYTAYDEVYYIAEAVKRAGSTDGEKLVEALEKTDYEGTIGRVQFYGKD 366 Query: 365 DEFTHGIKSGPGAVTGLVFQWQGGKQITVWPKAIAEGQMKFPNFVK 410 + FTHG+K G G +TGL+ QWQ GKQ+ VWP +A+ ++KFP F+K Sbjct: 367 EPFTHGLKYGKGLLTGLMLQWQDGKQVAVWPPEVAKAKIKFPAFIK 412 >ref|YP_002495417.1| extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] gb|ACL55114.1| Extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] Length = 421 Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 271/402 (67%), Positives = 330/402 (82%) Query: 9 RVSLLASALALCLAAPAYAQSKDPIKIGIIAEVQSIAGAATPGGAQIAADEINAKGGVMG 68 RV L ++ L A + Q+ DPI+I +IAE Q++AGA+ P AQ+AADEINAKGG+ G Sbjct: 14 RVLLASTILVGSHAVTSSVQAADPIRIAVIAEAQALAGASIPQAAQLAADEINAKGGIDG 73 Query: 69 RKIEIVTYDNKSSSADSVRAFQRAVSEDKVSAVIASYISEVVLALEPWASRLKMPLITPG 128 R +E+VTYDNKSS+ADSVRAFQRA SEDKV AVIASYISEVVLAL+PW++RLKMP ITPG Sbjct: 74 RMVELVTYDNKSSAADSVRAFQRAASEDKVHAVIASYISEVVLALQPWSARLKMPFITPG 133 Query: 129 AASNEITKAVHNDYEKNKYTFHGYLTSAAQAQLVCDAAKELLVDQLKFKSVAIMSEDAAW 188 AASNEI VH DY +NKY+FHGYLTS AQ+Q VCDAAK +LV+ + K+ IMSEDAAW Sbjct: 134 AASNEIPLNVHKDYARNKYSFHGYLTSKAQSQAVCDAAKAILVEGRQMKTAVIMSEDAAW 193 Query: 189 TKPLDVGYEACLPKAGLKVVEHIRFSPDTTDFTPIFNKMEAAKPDVIVTGISHVGVQPTV 248 TKPLD GY+ CLPK GL+V++HIRFSP TTDF+PIF+++E AKPDVIVTGISHVGVQPTV Sbjct: 194 TKPLDEGYKECLPKVGLQVLDHIRFSPSTTDFSPIFSRIEGAKPDVIVTGISHVGVQPTV 253 Query: 249 QWKNQQVPIPMFGISAQALSPTFWGDTNGAAEGVPSLAVATPDVAVTPKTKPFAAAFKAK 308 QW++QQ+PIPM GI++QA + TFW +TNGA EGV A P VTPKT PFA AFKAK Sbjct: 254 QWRSQQLPIPMIGIASQATNATFWKETNGATEGVLFEMFAAPGTNVTPKTAPFAEAFKAK 313 Query: 309 FGTPPAYTGYTAYDEVYIIAEAIQRAGSTDPDKMVTELEKTDFEGTIGKIQFYGKNDEFT 368 +G P+Y GYTAYDEVY IA+A++RAGSTDPDK+V LEKTD+EGT+G+IQFYG++D+FT Sbjct: 314 YGNYPSYAGYTAYDEVYYIADAVRRAGSTDPDKLVEALEKTDWEGTLGRIQFYGRDDDFT 373 Query: 369 HGIKSGPGAVTGLVFQWQGGKQITVWPKAIAEGQMKFPNFVK 410 H IK GPG V+G++ QWQ GKQ+ VWP +A G++ FP+FVK Sbjct: 374 HSIKYGPGLVSGMMMQWQDGKQLAVWPPNVANGKLTFPSFVK 415 >ref|YP_001771523.1| extracellular ligand-binding receptor [Methylobacterium sp. 4-46] gb|ACA19089.1| Extracellular ligand-binding receptor [Methylobacterium sp. 4-46] Length = 421 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 265/380 (69%), Positives = 318/380 (83%) Query: 31 DPIKIGIIAEVQSIAGAATPGGAQIAADEINAKGGVMGRKIEIVTYDNKSSSADSVRAFQ 90 DPI+IGIIAE Q++AGA+ P AQ+AADEINAKGGV GRKIE+VTYD+KSS+AD+VRAFQ Sbjct: 36 DPIRIGIIAEAQALAGASIPQAAQLAADEINAKGGVDGRKIELVTYDDKSSAADAVRAFQ 95 Query: 91 RAVSEDKVSAVIASYISEVVLALEPWASRLKMPLITPGAASNEITKAVHNDYEKNKYTFH 150 RA SEDKV AVIASYISEVVLAL+PW++RLKMP ITPGAASN+I VH DY +NKY+FH Sbjct: 96 RAASEDKVHAVIASYISEVVLALQPWSARLKMPFITPGAASNDIPLNVHKDYARNKYSFH 155 Query: 151 GYLTSAAQAQLVCDAAKELLVDQLKFKSVAIMSEDAAWTKPLDVGYEACLPKAGLKVVEH 210 GYLTS A +Q VCDAAK +LV+ K ++ IMSEDAAWTKPLD GYE CLP AGLKV++H Sbjct: 156 GYLTSKALSQSVCDAAKAILVEGRKMRTAVIMSEDAAWTKPLDAGYEECLPVAGLKVLDH 215 Query: 211 IRFSPDTTDFTPIFNKMEAAKPDVIVTGISHVGVQPTVQWKNQQVPIPMFGISAQALSPT 270 IRFSP TTDF+PIF+++E AKPDVI+TGISHVGVQPTVQWK+QQVPIPM GIS+QA + T Sbjct: 216 IRFSPSTTDFSPIFSRIEGAKPDVIITGISHVGVQPTVQWKSQQVPIPMLGISSQATNAT 275 Query: 271 FWGDTNGAAEGVPSLAVATPDVAVTPKTKPFAAAFKAKFGTPPAYTGYTAYDEVYIIAEA 330 FW +TNGAAEGV A P VTPKT PFA AFKA++G P+Y GYT YDEVY IA+A Sbjct: 276 FWKETNGAAEGVLFQMFAAPGTTVTPKTAPFADAFKARYGNYPSYAGYTTYDEVYYIADA 335 Query: 331 IQRAGSTDPDKMVTELEKTDFEGTIGKIQFYGKNDEFTHGIKSGPGAVTGLVFQWQGGKQ 390 ++RAGSTDPDK+V LEKTD+EGT+G++QFYGK+D+FTH +K GPG ++G++ QW G+Q Sbjct: 336 VKRAGSTDPDKLVDALEKTDWEGTMGRVQFYGKDDDFTHSVKYGPGLISGMMMQWLDGRQ 395 Query: 391 ITVWPKAIAEGQMKFPNFVK 410 VWP +A G++ FP FVK Sbjct: 396 TAVWPATVANGKLTFPAFVK 415 >ref|YP_004110088.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU45355.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 416 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/393 (68%), Positives = 323/393 (82%), Gaps = 1/393 (0%) Query: 18 ALCLAAPAYAQSKDPIKIGIIAEVQSIAGAATPGGAQIAADEINAKGGVMGRKIEIVTYD 77 AL L AP+ A + IKIG+IAE Q+I GA+ P A++AA+EINA GG+ GRKIEIV YD Sbjct: 21 ALGLGAPS-ALAAGQIKIGVIAEAQAIVGASIPQAARLAAEEINANGGIDGRKIEIVGYD 79 Query: 78 NKSSSADSVRAFQRAVSEDKVSAVIASYISEVVLALEPWASRLKMPLITPGAASNEITKA 137 N SS+ADSVRAFQRAV +DKV VIASY SEVVLAL PWASRLK P +TPGA+SNEI+KA Sbjct: 80 NHSSAADSVRAFQRAVKDDKVKVVIASYNSEVVLALMPWASRLKTPFVTPGASSNEISKA 139 Query: 138 VHNDYEKNKYTFHGYLTSAAQAQLVCDAAKELLVDQLKFKSVAIMSEDAAWTKPLDVGYE 197 VHNDYE +KYTF GYLTS AQ VCDAAK+LLVD K KS IMSEDAAWT+PLDVGY+ Sbjct: 140 VHNDYETHKYTFQGYLTSGKLAQSVCDAAKDLLVDARKMKSAVIMSEDAAWTQPLDVGYQ 199 Query: 198 ACLPKAGLKVVEHIRFSPDTTDFTPIFNKMEAAKPDVIVTGISHVGVQPTVQWKNQQVPI 257 CLPK GL+V++HIRFS DTTDF PIF+K+E +KPDVI+TGISHVGVQPTVQWKNQQVPI Sbjct: 200 ECLPKVGLQVLDHIRFSLDTTDFAPIFSKIEGSKPDVIITGISHVGVQPTVQWKNQQVPI 259 Query: 258 PMFGISAQALSPTFWGDTNGAAEGVPSLAVATPDVAVTPKTKPFAAAFKAKFGTPPAYTG 317 PMFGI++QA + TF GDT+ A+EGV V+ P VAVTPK+ PFA FK K+G P++ G Sbjct: 260 PMFGIASQATNETFGGDTDNASEGVLYQGVSGPGVAVTPKSVPFAENFKRKYGNYPSFAG 319 Query: 318 YTAYDEVYIIAEAIQRAGSTDPDKMVTELEKTDFEGTIGKIQFYGKNDEFTHGIKSGPGA 377 YTAYD+VY IAEA++RAGSTD DK++ LE+TD+EGTIG++QFYGK++ FTHG++ G G Sbjct: 320 YTAYDQVYYIAEAVKRAGSTDADKLIEALEETDYEGTIGRVQFYGKDEPFTHGLRYGKGL 379 Query: 378 VTGLVFQWQGGKQITVWPKAIAEGQMKFPNFVK 410 +TGL+ QWQGGKQI VWP +A+ ++KFP F+K Sbjct: 380 LTGLMLQWQGGKQIAVWPPDVAKAEIKFPAFIK 412