BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0113.p (534 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769747.1| hypothetical protein bll3107 [Bradyrhizobium ja... 1017 0.0 ref|ZP_01462939.1| thiamine pyrophosphate enzyme [Stigmatella au... 731 0.0 ref|YP_004835898.1| thiamine pyrophosphate enzyme [Sphingobium s... 716 0.0 ref|YP_004833988.1| thiamine pyrophosphate enzyme [Sphingobium s... 698 0.0 ref|YP_002524073.1| thiamine pyrophosphate enzyme, central domai... 695 0.0 >ref|NP_769747.1| hypothetical protein bll3107 [Bradyrhizobium japonicum USDA 110] dbj|BAC48372.1| bll3107 [Bradyrhizobium japonicum USDA 110] Length = 544 Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/534 (92%), Positives = 521/534 (97%) Query: 1 MKREGIEILTGYPVNHLIEYAANADIRPVMVRQERIGVHMADAISRVTSGEKIGAFCMQH 60 M+REGIEIL GYPVNHLIE+AA A+IRPVMVRQER+G+HMADAISRVTSG IGAFCMQH Sbjct: 11 MRREGIEILCGYPVNHLIEHAAKAEIRPVMVRQERVGIHMADAISRVTSGRTIGAFCMQH 70 Query: 61 GPGAENAMGGVAQCYGESVPVLVLPMGYARRLANIDPNFNSSQAMKAFSKSSEPINIAAE 120 GPGAENAMGGVAQC+GESVPVLVLPMGY RRLA+I+PNFNSS+AMK F+KSSEPI +AAE Sbjct: 71 GPGAENAMGGVAQCFGESVPVLVLPMGYPRRLAHIEPNFNSSEAMKPFAKSSEPIILAAE 130 Query: 121 VCNIFRRAFTKLKNGRGGPVIVEIPADMWNEEVPEPLNYTPVLRTRYGADPVHVKEAAAL 180 V NIFRRAFTKLKNGRGGPVIVEIP+DMWNEEVPEPLNYTPVLRTRYGADPVHVKEAAAL Sbjct: 131 VANIFRRAFTKLKNGRGGPVIVEIPSDMWNEEVPEPLNYTPVLRTRYGADPVHVKEAAAL 190 Query: 181 LVGAKRPVIYAGQGMHYAKAWPQLKRLAERLAIPVTTSLGGKSSFPETHPLSLGSGGLAV 240 LV AKRPVIYAGQG+HYA+AWPQLKRLAERLAIPVTTSLGGKSSFPETHPLSLGSGGLAV Sbjct: 191 LVNAKRPVIYAGQGVHYAQAWPQLKRLAERLAIPVTTSLGGKSSFPETHPLSLGSGGLAV 250 Query: 241 PRAVPKFLSEADVIFGIGCSFTETSFGIAMPKGKTIIHSTLDPNHINKDVEAKVGLVGDA 300 PRAVPKFLSEADVIFGIGCSFTETSFG+AMPKGKTIIHSTLDPNH+NKDVEAK+GLVGDA Sbjct: 251 PRAVPKFLSEADVIFGIGCSFTETSFGVAMPKGKTIIHSTLDPNHLNKDVEAKIGLVGDA 310 Query: 301 GLVLDALLEEIGKTVTTDRNASAVAEEIAASHKEWLAKWMPKLTHNDAPLNPYRVLWDLQ 360 GLVLDALLEEIGKTVT DR+ASAVA EIAASH+EWLAKWMPKLT NDAPL+PYRVLWDLQ Sbjct: 311 GLVLDALLEEIGKTVTKDRDASAVAAEIAASHREWLAKWMPKLTSNDAPLSPYRVLWDLQ 370 Query: 361 HTVDIHNTIITHDAGSPRDQLSPFWKSVEPLSYIGWGKTTQLGYGLGLAMGAKLAKPDKL 420 HTVDI NTIITHDAGSPRDQLSPFWK+VEPLSY+GWGKTTQLGYGLGLAMGAKLAKPDKL Sbjct: 371 HTVDISNTIITHDAGSPRDQLSPFWKAVEPLSYLGWGKTTQLGYGLGLAMGAKLAKPDKL 430 Query: 421 CINVWGDAAIGFTGMDFETAVRERIPIMSILLNNFSMAIELKVMPISTEKYRSTDISGDY 480 CINVWGDAAIGFTGMDFETAVRERIPIMSILLNNFSMAIELKVMP+STEKYRSTDISGDY Sbjct: 431 CINVWGDAAIGFTGMDFETAVRERIPIMSILLNNFSMAIELKVMPVSTEKYRSTDISGDY 490 Query: 481 AALARAFGGYGERVTKPEDIIPAIKRGIQKTREGVPVLLEFITSKETEVSRPGT 534 AA+ARAFGGYGERVT+PEDIIPAIKRGIQKT+EGVPVLLEFITSKETEVSRPGT Sbjct: 491 AAMARAFGGYGERVTRPEDIIPAIKRGIQKTKEGVPVLLEFITSKETEVSRPGT 544 >ref|ZP_01462939.1| thiamine pyrophosphate enzyme [Stigmatella aurantiaca DW4/3-1] ref|YP_003953518.1| thiamine pyrophosphate enzyme [Stigmatella aurantiaca DW4/3-1] gb|EAU66312.1| thiamine pyrophosphate enzyme [Stigmatella aurantiaca DW4/3-1] gb|ADO71691.1| Thiamine pyrophosphate enzyme [Stigmatella aurantiaca DW4/3-1] Length = 544 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/532 (65%), Positives = 419/532 (78%), Gaps = 2/532 (0%) Query: 1 MKREGIEILTGYPVNHLIEYAANADIRPVMVRQERIGVHMADAISRVTSGEKIGAFCMQH 60 +K EG+E L YP+N +IE AAN DIRP++VRQER G+HMADA+SR++SG ++G FCMQ+ Sbjct: 11 LKAEGVEYLFAYPMNPIIEAAANVDIRPIVVRQERTGLHMADALSRMSSGRRVGVFCMQN 70 Query: 61 GPGAENAMGGVAQCYGESVPVLVLPMGYARRLANIDPNFNSSQAMKAFSKSSEPINIAAE 120 GPGAENA GGVAQ YGESVP++VLPMG+ R + ++PNF+S+ + +KS+E + + Sbjct: 71 GPGAENAFGGVAQAYGESVPLVVLPMGFPRSQSGVNPNFSSALNFRHITKSAEQVLVPQA 130 Query: 121 VCNIFRRAFTKLKNGRGGPVIVEIPADMWNEEVPEPLNYTPVLRTRYGADPVHVKEAAAL 180 + + RRAF + +NGR P +VEIP+D++NEEVPEP +Y P R DP V+ A++ Sbjct: 131 IPDALRRAFFQARNGRPRPALVEIPSDLFNEEVPEPWHYRPAPEVRSAPDPEVVERVASV 190 Query: 181 LVGAKRPVIYAGQGMHYAKAWPQLKRLAERLAIPVTTSLGGKSSFPETHPLSLGSGGLAV 240 L GA RPVIYAGQG+HYA+AW LK +AE L PV TSLGGKS+FPE HPL+LGSGG A+ Sbjct: 191 LAGAARPVIYAGQGVHYARAWAALKEMAELLEAPVVTSLGGKSAFPENHPLALGSGGRAI 250 Query: 241 PRAVPKFLSEADVIFGIGCSFTETSFGIAMPKGKTIIHSTLDPNHINKDVEAKVGLVGDA 300 PR V FL ADVI GIGCSFT T FG+ +PKGKT+IH+TLDP+ I KD+EA+ LVGDA Sbjct: 251 PRTVHTFLQSADVILGIGCSFTSTKFGVKIPKGKTLIHATLDPSDIYKDIEAEYALVGDA 310 Query: 301 GLVLDALLEEIGKTVTTDRNASA--VAEEIAASHKEWLAKWMPKLTHNDAPLNPYRVLWD 358 L L+AL++ + + + VA IA EWLA W PKLT N APL+PYRV+WD Sbjct: 311 RLTLEALVQAVRPRLGGKPRGRSGDVARRIADVKAEWLAVWRPKLTSNAAPLSPYRVIWD 370 Query: 359 LQHTVDIHNTIITHDAGSPRDQLSPFWKSVEPLSYIGWGKTTQLGYGLGLAMGAKLAKPD 418 L HTVD+ NTIITHDAGSPRDQLSPFW+SV PLSYIGWGKTTQLGYGLGLAMGAKLA+P Sbjct: 371 LMHTVDVANTIITHDAGSPRDQLSPFWESVTPLSYIGWGKTTQLGYGLGLAMGAKLARPG 430 Query: 419 KLCINVWGDAAIGFTGMDFETAVRERIPIMSILLNNFSMAIELKVMPISTEKYRSTDISG 478 +LCINVWGDAAIGFTGMDFETAVRERIPI+SIL NN SMA+E+ VMP+ST+KYRSTDISG Sbjct: 431 QLCINVWGDAAIGFTGMDFETAVRERIPILSILFNNSSMALEVPVMPVSTQKYRSTDISG 490 Query: 479 DYAALARAFGGYGERVTKPEDIIPAIKRGIQKTREGVPVLLEFITSKETEVS 530 DYA + RA GGYGERV PE IIPAI+RGI KT EGVP LLEFIT++ETE S Sbjct: 491 DYAGMVRALGGYGERVMTPEQIIPAIRRGIAKTEEGVPALLEFITAQETEFS 542 >ref|YP_004835898.1| thiamine pyrophosphate enzyme [Sphingobium sp. SYK-6] dbj|BAK67441.1| thiamine pyrophosphate enzyme [Sphingobium sp. SYK-6] Length = 542 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/531 (64%), Positives = 416/531 (78%) Query: 1 MKREGIEILTGYPVNHLIEYAANADIRPVMVRQERIGVHMADAISRVTSGEKIGAFCMQH 60 + +EG+E++ GYP N ++E AA IRPV+VRQER GVHMADA+SR++ G+++G F MQH Sbjct: 11 LAKEGVEVIFGYPRNAVLETAAEIGIRPVIVRQERTGVHMADALSRLSRGKRLGVFAMQH 70 Query: 61 GPGAENAMGGVAQCYGESVPVLVLPMGYARRLANIDPNFNSSQAMKAFSKSSEPINIAAE 120 GPG ENA GGVAQ Y ESVPVLVLP GYARR+A++ N+N++ +M+ K +EP+N+A E Sbjct: 71 GPGTENAYGGVAQAYSESVPVLVLPQGYARRIAHLPDNYNATVSMRDVCKHAEPLNVAEE 130 Query: 121 VCNIFRRAFTKLKNGRGGPVIVEIPADMWNEEVPEPLNYTPVLRTRYGADPVHVKEAAAL 180 V N+ RRAFT+L+NGR PVI+E+P D+ EEV EPL Y P + + DP V+ AAAL Sbjct: 131 VGNVMRRAFTQLRNGRLRPVIIELPWDVLPEEVEEPLVYHPSVSAKSAPDPAGVRAAAAL 190 Query: 181 LVGAKRPVIYAGQGMHYAKAWPQLKRLAERLAIPVTTSLGGKSSFPETHPLSLGSGGLAV 240 L AKRPVIYAGQG+H+A+A+ +L+ LAE LA+PV TSL GKS F ETHPL+LGSGG AV Sbjct: 191 LTSAKRPVIYAGQGVHWAEAYDELRALAEALAVPVATSLEGKSCFDETHPLALGSGGAAV 250 Query: 241 PRAVPKFLSEADVIFGIGCSFTETSFGIAMPKGKTIIHSTLDPNHINKDVEAKVGLVGDA 300 P + FL EADVI GIGCSF+ET+FG+ MP GK IIH+TLDP INK V ++ LVGDA Sbjct: 251 PGQLRHFLDEADVILGIGCSFSETAFGVRMPAGKRIIHATLDPADINKSVPCELALVGDA 310 Query: 301 GLVLDALLEEIGKTVTTDRNASAVAEEIAASHKEWLAKWMPKLTHNDAPLNPYRVLWDLQ 360 L L LL+ + R+ + +A EIA + W+A+W+P LT + P+ PYRVLW+LQ Sbjct: 311 KLTLSMLLDASRGLIDDPRDMAPIAAEIAQVERSWMAEWLPILTSDSVPMTPYRVLWELQ 370 Query: 361 HTVDIHNTIITHDAGSPRDQLSPFWKSVEPLSYIGWGKTTQLGYGLGLAMGAKLAKPDKL 420 TVD+ NTIITHDAGSPRDQL+PFWKS PLSYIGWGK+TQLGYGLGLAMGAKLA PDKL Sbjct: 371 QTVDVANTIITHDAGSPRDQLTPFWKSRTPLSYIGWGKSTQLGYGLGLAMGAKLACPDKL 430 Query: 421 CINVWGDAAIGFTGMDFETAVRERIPIMSILLNNFSMAIELKVMPISTEKYRSTDISGDY 480 CINVWGDAAIGFTGMDFETAVRER+PI+SILLNN +MAIEL +MP +TE+YR+TDISGDY Sbjct: 431 CINVWGDAAIGFTGMDFETAVRERLPILSILLNNSAMAIELDIMPAATERYRATDISGDY 490 Query: 481 AALARAFGGYGERVTKPEDIIPAIKRGIQKTREGVPVLLEFITSKETEVSR 531 AA ARA GGYGERV +P DI AI+RGI T+ G P L+EFIT+KE SR Sbjct: 491 AAFARALGGYGERVERPADIADAIRRGIAATQAGQPALIEFITAKEKRASR 541 >ref|YP_004833988.1| thiamine pyrophosphate enzyme [Sphingobium sp. SYK-6] dbj|BAK65531.1| thiamine pyrophosphate enzyme [Sphingobium sp. SYK-6] Length = 543 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/532 (63%), Positives = 410/532 (77%), Gaps = 2/532 (0%) Query: 1 MKREGIEILTGYPVNHLIEYAANADIRPVMVRQERIGVHMADAISRVTSGEKIGAFCMQH 60 +K EG+++L GYP N L+E AA A+IR ++ RQERIG+HMADA SR+T GEKIG FC QH Sbjct: 11 LKLEGVDVLFGYPRNALLEAAAQANIRTIIPRQERIGLHMADAYSRLTRGEKIGVFCCQH 70 Query: 61 GPGAENAMGGVAQCYGESVPVLVLPMGYARRLANIDPNFNSSQAMKAFSKSSEPINIAAE 120 GPGAE A GVAQ YGESVP+LV+P GY+ A++ NFNS + M +KS+EP+N + Sbjct: 71 GPGAEVAYAGVAQAYGESVPILVMPGGYSTATAHVGRNFNSVRNMAQITKSAEPLNFPSH 130 Query: 121 VCNIFRRAFTKLKNGRGGPVIVEIPADMWNEEVPEPLNYTPVLRTRYGADPVHVKEAAAL 180 V + RRAFT L+NGRGGP +VE+P D+ ++ + + Y PVLR+R+ D + AA+L Sbjct: 131 VNAVMRRAFTALRNGRGGPALVELPFDVLEQDGAQ-VAYQPVLRSRFAPDGESITRAASL 189 Query: 181 LVGAKRPVIYAGQGMHYAKAWPQLKRLAERLAIPVTTSLGGKSSFPETHPLSLGSGGLAV 240 L AKRPV+YAGQG+H++ A+ +LK LAE LAIPV TSL GKSSF ETHPL+LGSGG A+ Sbjct: 190 LCAAKRPVLYAGQGIHWSGAYAELKELAELLAIPVCTSLPGKSSFDETHPLALGSGGAAM 249 Query: 241 PRAVPKFLSEADVIFGIGCSFTETSFGIAMPKGKTIIHSTLDPNHINKDVEAKVGLVGDA 300 P AV FL EADVI G+GCSFT T+FGI MP GKT+IH+TLDP +N+ VE V L+GDA Sbjct: 250 PHAVRHFLDEADVILGVGCSFTATAFGIRMPAGKTVIHATLDPVELNRAVETDVALIGDA 309 Query: 301 GLVLDALLEEI-GKTVTTDRNASAVAEEIAASHKEWLAKWMPKLTHNDAPLNPYRVLWDL 359 L L AL+ T R+ SAV EI WLAKWMPKLT + P+ PYRVLWDL Sbjct: 310 KLTLSALIAACRALTGGAPRDMSAVTAEIRKLDDAWLAKWMPKLTSDQVPITPYRVLWDL 369 Query: 360 QHTVDIHNTIITHDAGSPRDQLSPFWKSVEPLSYIGWGKTTQLGYGLGLAMGAKLAKPDK 419 Q+TVD+ NTIITHDAGSPRDQLSPFWK+ P S++GWGKTTQLGYGLGLAMGAKLA PDK Sbjct: 370 QNTVDVANTIITHDAGSPRDQLSPFWKTRAPHSFLGWGKTTQLGYGLGLAMGAKLACPDK 429 Query: 420 LCINVWGDAAIGFTGMDFETAVRERIPIMSILLNNFSMAIELKVMPISTEKYRSTDISGD 479 LCINVWGDAAIGFTGMDFETAVRER+PI+SILLNN SMA+ELKVMP +T+++RSTDISG+ Sbjct: 430 LCINVWGDAAIGFTGMDFETAVRERLPILSILLNNASMAMELKVMPTATDRFRSTDISGN 489 Query: 480 YAALARAFGGYGERVTKPEDIIPAIKRGIQKTREGVPVLLEFITSKETEVSR 531 YA A A GG+GER++ EDI+PAI+R I T G P LLEF+TS+E E SR Sbjct: 490 YAQFATALGGHGERISAVEDIVPAIRRAIAATEAGKPALLEFMTSQEQEFSR 541 >ref|YP_002524073.1| thiamine pyrophosphate enzyme, central domain family [Thermomicrobium roseum DSM 5159] gb|ACM06545.1| thiamine pyrophosphate enzyme, central domain family [Thermomicrobium roseum DSM 5159] Length = 545 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/535 (62%), Positives = 407/535 (76%), Gaps = 3/535 (0%) Query: 1 MKREGIEILTGYPVNHLIEYAANADIRPVMVRQERIGVHMADAISRVTSGEKIGAFCMQH 60 +KREG++++ GYPVN ++E AA ADIR V+VRQER+G+HMADA+SRVTSG++IG F MQH Sbjct: 11 LKREGVDLIIGYPVNDVLEAAARADIRTVIVRQERVGIHMADAMSRVTSGQRIGVFAMQH 70 Query: 61 GPGAENAMGGVAQCYGESVPVLVLPMGYARRLANIDPNFNSSQAMKAFSKSSEPINIAAE 120 GPG ENA G VAQ Y +SVPVL+LP GY R + N+ PNF++ + +K E + + E Sbjct: 71 GPGTENAFGAVAQAYADSVPVLILPEGYPRPIQNLPPNFSALLNYREIAKWVEQVVLPGE 130 Query: 121 VCNIFRRAFTKLKNGRGGPVIVEIPADMWNEEVPEPLNYTPVLRTRYGADPVHVKEAAAL 180 V N RRA+T+LKNGR PV++E+P D+ EE PL+Y P R R DPV V E AA+ Sbjct: 131 VPNALRRAWTQLKNGRPRPVVIELPRDLVQEEFAGPLDYRPAPRVRIAPDPVAVDEVAAV 190 Query: 181 LVGAKRPVIYAGQGMHYAKAWPQLKRLAERLAIPVTTSLGGKSSFPETHPLSLGSGGLAV 240 L+ A+RPVIYAGQG+HYA+AW +L+ LAE L PV TSL GKS+FPE HPL+LG+GG A Sbjct: 191 LLAARRPVIYAGQGVHYAQAWEELRALAELLEAPVCTSLQGKSAFPEDHPLALGAGGRAY 250 Query: 241 PRAVPKFLSEADVIFGIGCSFTETSFGIAMP-KGKTIIHSTLDPNHINKDVEAKVGLVGD 299 P V FL EADVIFGIGCSFT T++G+ +P +GKTIIH+TLDP +NKDV L+GD Sbjct: 251 PATVAHFLREADVIFGIGCSFTRTNYGVRIPYEGKTIIHATLDPADLNKDVPISHALLGD 310 Query: 300 AGLVLDALLEEIGKTVTTDRNAS--AVAEEIAASHKEWLAKWMPKLTHNDAPLNPYRVLW 357 A L L AL E + + + V EI WLA+WMPKLT ++ PL PYRV+W Sbjct: 311 AKLTLAALYEAVSERLGGKPRGRLPEVVAEIRRVRDAWLAQWMPKLTSDEVPLTPYRVIW 370 Query: 358 DLQHTVDIHNTIITHDAGSPRDQLSPFWKSVEPLSYIGWGKTTQLGYGLGLAMGAKLAKP 417 +L HT+DI TIITHDAGSPRDQLSPFW S PL+Y+GWGK+TQLGYGLGLAMGAKLA+P Sbjct: 371 ELMHTLDIDRTIITHDAGSPRDQLSPFWVSKRPLTYLGWGKSTQLGYGLGLAMGAKLARP 430 Query: 418 DKLCINVWGDAAIGFTGMDFETAVRERIPIMSILLNNFSMAIELKVMPISTEKYRSTDIS 477 D LCINVWGDAAIG TGMDFETAVRERIPI+SIL NNFSMAIE+ VMP++TEKYR+TDIS Sbjct: 431 DMLCINVWGDAAIGMTGMDFETAVRERIPILSILFNNFSMAIEIPVMPVATEKYRATDIS 490 Query: 478 GDYAALARAFGGYGERVTKPEDIIPAIKRGIQKTREGVPVLLEFITSKETEVSRP 532 GDYAA ARA GGYGERVT+P I+PAI+R ++ +G P LLEFIT KE +S P Sbjct: 491 GDYAAFARAMGGYGERVTEPGQIVPAIQRALRAVEDGTPALLEFITGKELAISTP 545