BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0110.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769760.1| ATP-dependent DNA ligase protein [Bradyrhizobiu... 515 e-144 ref|YP_001204776.1| putative Ku family protein [Bradyrhizobium s... 502 e-140 ref|YP_001239090.1| hypothetical protein BBta_3065 [Bradyrhizobi... 495 e-138 ref|ZP_08627058.1| Ku domain-containing protein [Bradyrhizobiace... 461 e-128 ref|YP_575800.1| hypothetical protein Nham_0450 [Nitrobacter ham... 458 e-127 >ref|NP_769760.1| ATP-dependent DNA ligase protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48385.1| bll3120 [Bradyrhizobium japonicum USDA 110] Length = 327 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 265/329 (80%), Positives = 291/329 (88%), Gaps = 6/329 (1%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSDTEKVSFNQINRKTGHRIKYAKVDAETGEEVST 60 MAPRANWKGFLRLSLVTCPVALYPATSDTEKVSFNQINRKTGHRIKY KVDAETG+EV++ Sbjct: 1 MAPRANWKGFLRLSLVTCPVALYPATSDTEKVSFNQINRKTGHRIKYLKVDAETGDEVTS 60 Query: 61 EDIMKGYKVDTDTYIEVTKEELDDIALDSTRTIEIDEFVPRSEIDSRYMIRPYYLVPDGK 120 EDI+KGYKVDTDTYIEVTK+ELD+IALDST TIEIDEFVP+++ID+RY+IRPYYLVPDGK Sbjct: 61 EDIVKGYKVDTDTYIEVTKDELDEIALDSTHTIEIDEFVPKADIDNRYLIRPYYLVPDGK 120 Query: 121 VGHDAFAVIRETIRSLNKVAIGRVVLTNREHIIALEPLDNGLMGTLLRYPYEVRSEKEYF 180 VGHDAFAVIRETIRS++KVAIGRVVLTNREHIIALEPL++GLMGTLLRYPYEVRSEKEYF Sbjct: 121 VGHDAFAVIRETIRSMDKVAIGRVVLTNREHIIALEPLESGLMGTLLRYPYEVRSEKEYF 180 Query: 181 DDIQDVKITKDMLDLAKHIVEQKSADFDPEEFEDRYEQALIDLINQKRNG-IKIAKPAAK 239 DDIQDVK+TKDMLDLAKHIVE+KS F+PE FED YE ALIDLIN+KR+G AK A K Sbjct: 181 DDIQDVKLTKDMLDLAKHIVEKKSGAFEPELFEDHYEAALIDLINKKRSGAPIAAKAAPK 240 Query: 240 TSGNVINLMDALKKSLANEKQAAP-AKAEAKAAKGKKPKKRIEGQREMLLPISGSGKRE- 297 T GNVINLMDALKKSLA+EK AAP AK + KGKKPKKR+EGQREMLLPI+G G +E Sbjct: 241 TGGNVINLMDALKKSLASEKDAAPIAKVVKETVKGKKPKKRVEGQREMLLPIAGKGGKEA 300 Query: 298 -PKEAAKPEPKKAEKTTRAQGTAARKKAG 325 K A K KKA+K RA A KKAG Sbjct: 301 AAKTAPKEASKKADKPVRAPARA--KKAG 327 >ref|YP_001204776.1| putative Ku family protein [Bradyrhizobium sp. ORS 278] emb|CAL76539.1| conserved hypothetical protein; putative Ku family protein [Bradyrhizobium sp. ORS 278] Length = 329 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 261/332 (78%), Positives = 292/332 (87%), Gaps = 10/332 (3%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSDTEKVSFNQINRKTGHRIKYAKVDAETGEEVST 60 MAPRANWKGFLRLSLVTCPVALYPATS++EKVSFNQINRKTGHRIKY++VDAETGEEV+ Sbjct: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQINRKTGHRIKYSRVDAETGEEVAN 60 Query: 61 EDIMKGYKVDTDTYIEVTKEELDDIALDSTRTIEIDEFVPRSEIDSRYMIRPYYLVPDGK 120 EDI+KGYKVDTDTYIEVTK+EL+DIAL+ST TIEIDEFVPR++IDSRY+IRPYYLVPDGK Sbjct: 61 EDIVKGYKVDTDTYIEVTKDELEDIALESTHTIEIDEFVPRTDIDSRYLIRPYYLVPDGK 120 Query: 121 VGHDAFAVIRETIRSLNKVAIGRVVLTNREHIIALEPLDNGLMGTLLRYPYEVRSEKEYF 180 VGHDAFAVIRETIRS++KVAIGRVVLTNREHIIALEPLD GLMGTLLRYPYEVR+E+EYF Sbjct: 121 VGHDAFAVIRETIRSMDKVAIGRVVLTNREHIIALEPLDKGLMGTLLRYPYEVRNEQEYF 180 Query: 181 DDIQDVKITKDMLDLAKHIVEQKSADFDPEEFEDRYEQALIDLINQKRNGIKI-AKPAAK 239 DDIQDVKIT DMLDLAKHIVE+KSADF PE FED YE AL++LIN+KRNG+ I A+ A K Sbjct: 181 DDIQDVKITSDMLDLAKHIVEKKSADFQPENFEDHYEAALVELINKKRNGVTITARAAPK 240 Query: 240 TSGNVINLMDALKKSLANEK-QAAPAKAEAKAAKGKKPKKRIEGQREMLLPISGSGKREP 298 ++GNVINLMDALK+SLA+E + A A A AK KK KKR+EGQREMLLPISG +EP Sbjct: 241 STGNVINLMDALKRSLASESDKVPAASAPASKAKPKKAKKRVEGQREMLLPISGKKAKEP 300 Query: 299 KEAAKP----EPKKAEKTTRAQGTAAR-KKAG 325 +P EPKKAEK R TAAR +KAG Sbjct: 301 LSKDEPKKADEPKKAEKPAR---TAARSRKAG 329 >ref|YP_001239090.1| hypothetical protein BBta_3065 [Bradyrhizobium sp. BTAi1] gb|ABQ35184.1| hypothetical protein BBta_3065 [Bradyrhizobium sp. BTAi1] Length = 321 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 263/328 (80%), Positives = 289/328 (88%), Gaps = 10/328 (3%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSDTEKVSFNQINRKTGHRIKYAKVDAETGEEVST 60 MAPRANWKGFLRLSLVTCPVALYPATS++EKVSFNQINRKTGHRIKY+KVDAETGEEV+ Sbjct: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQINRKTGHRIKYSKVDAETGEEVTN 60 Query: 61 EDIMKGYKVDTDTYIEVTKEELDDIALDSTRTIEIDEFVPRSEIDSRYMIRPYYLVPDGK 120 +DI+KGYKVDTDTYIEVTK ELD++ALDST TI+IDEFVPRS+IDSRY+IRPYYLVPDGK Sbjct: 61 DDIVKGYKVDTDTYIEVTKGELDELALDSTHTIDIDEFVPRSDIDSRYLIRPYYLVPDGK 120 Query: 121 VGHDAFAVIRETIRSLNKVAIGRVVLTNREHIIALEPLDNGLMGTLLRYPYEVRSEKEYF 180 VGHDAFAVIRETIRS++KVAIGRVVLTNREHIIALEPL GLMGTLLRYPYEVRSE++YF Sbjct: 121 VGHDAFAVIRETIRSMDKVAIGRVVLTNREHIIALEPLGKGLMGTLLRYPYEVRSEQDYF 180 Query: 181 DDIQDVKITKDMLDLAKHIVEQKSADFDPEEFEDRYEQALIDLINQKRNGIKI-AKPAAK 239 DDIQDV ITKDMLDLAKHIVE+KSADF PE FED YE ALI+LIN+KRNG+ I AK A K Sbjct: 181 DDIQDVTITKDMLDLAKHIVEKKSADFRPENFEDHYEAALIELINKKRNGVAITAKAAPK 240 Query: 240 TSGNVINLMDALKKSLANEKQAAPAKAEAKAAKGKKPKKRIEGQREMLLPISG-SGKREP 298 +SGNVINLMDALK+SLA+ AAPA A AK KKR+EGQREMLLPISG K EP Sbjct: 241 SSGNVINLMDALKRSLASTDTAAPAPAPKAKAKKP--KKRVEGQREMLLPISGKKAKDEP 298 Query: 299 KEAAKPEPKKAEKTTRAQGTAAR-KKAG 325 K+A EPKKAEK R T+AR +KAG Sbjct: 299 KKAE--EPKKAEKPAR---TSARSRKAG 321 >ref|ZP_08627058.1| Ku domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10338.1| Ku domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] Length = 310 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 232/315 (73%), Positives = 264/315 (83%), Gaps = 11/315 (3%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSDTEKVSFNQINRKTGHRIKYAKVDAETGEEVST 60 MAPRANWKGFLRLSLVTCPVALYPATS++EKVSFNQ+NRKTGHRIKYAKVDA+TGEEV+ Sbjct: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVAN 60 Query: 61 EDIMKGYKVDTDTYIEVTKEELDDIALDSTRTIEIDEFVPRSEIDSRYMIRPYYLVPDGK 120 EDI+KGYKVDTDT+IEVTKEEL+++AL+STRTIEIDEFV RSEID RY+IRPYYLVPDGK Sbjct: 61 EDIVKGYKVDTDTFIEVTKEELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYLVPDGK 120 Query: 121 VGHDAFAVIRETIRSLNKVAIGRVVLTNREHIIALEPLDNGLMGTLLRYPYEVRSEKEYF 180 VGHDAFAVIRETIR +NKVAIGRVVLTNREHIIAL+PLD GLMGTLLRYPYEVRS EYF Sbjct: 121 VGHDAFAVIRETIREMNKVAIGRVVLTNREHIIALDPLDKGLMGTLLRYPYEVRSADEYF 180 Query: 181 DDIQDVKITKDMLDLAKHIVEQKSADFDPEEFEDRYEQALIDLINQKRNGIKIAKPAAKT 240 D+IQDVK+TKDMLDLA+HIV QK+ F+P++FED+YE ALIDLINQKR G I A Sbjct: 181 DEIQDVKVTKDMLDLARHIVNQKAGHFEPDKFEDQYETALIDLINQKRAGKPITAKARPR 240 Query: 241 SGNVINLMDALKKSLANEKQAAPAKAEAKAAKGKKPKKRIEGQREMLLPISGSGKREPKE 300 NV++LMDAL+KS+ AA EA KKP+K GQ+EML+PI +GK+ KE Sbjct: 241 GENVVDLMDALRKSIGGGAAAA---TEAPKKTAKKPRKAAAGQKEMLMPI--AGKKPAKE 295 Query: 301 ------AAKPEPKKA 309 AAKP+ K A Sbjct: 296 GVAKKPAAKPQRKSA 310 >ref|YP_575800.1| hypothetical protein Nham_0450 [Nitrobacter hamburgensis X14] gb|ABE61340.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 333 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 227/334 (67%), Positives = 269/334 (80%), Gaps = 10/334 (2%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSDTEKVSFNQINRKTGHRIKYAKVDAETGEEVST 60 MAPRANWKGFLRLSLVTCPVAL+PATS++EKVSFNQINRKTGHRIKY KVDAETGE+V T Sbjct: 1 MAPRANWKGFLRLSLVTCPVALFPATSESEKVSFNQINRKTGHRIKYQKVDAETGEDVDT 60 Query: 61 EDIMKGYKVDTDTYIEVTKEELDDIALDSTRTIEIDEFVPRSEIDSRYMIRPYYLVPDGK 120 DI+KGYK+DTD+Y+EVT++ELD+IALDST TIEID+FVPR+EID Y++RPYYLVPDGK Sbjct: 61 GDIVKGYKIDTDSYLEVTRDELDNIALDSTHTIEIDQFVPRAEIDDLYIVRPYYLVPDGK 120 Query: 121 VGHDAFAVIRETIRSLNKVAIGRVVLTNREHIIALEPLDNGLMGTLLRYPYEVRSEKEYF 180 VGHDA+AVIR+TI++ K+A+ RVVLTNREH+IALE DNGL+G LLRYPYEVR +YF Sbjct: 121 VGHDAYAVIRDTIKTTGKIALARVVLTNREHVIALEARDNGLVGLLLRYPYEVRDAADYF 180 Query: 181 DDIQDVKITKDMLDLAKHIVEQKSADFDPEEFEDRYEQALIDLINQKRNGIKIAKPAAKT 240 D I+D KITKDMLDLA+HIVEQKS F+P FED YE AL+DLI QK+ G IAK +T Sbjct: 181 DVIKDAKITKDMLDLARHIVEQKSGHFEPTAFEDHYEAALLDLIEQKKAGHPIAKAKVRT 240 Query: 241 SGNVINLMDALKKSLANEKQAAPAKAEAKAAKGKKPKKRIEGQREMLLPISG------SG 294 GNVINLMDAL++SL + + +APA EA KGKK +KR+EGQREML PI G Sbjct: 241 EGNVINLMDALRQSLKSGR-SAPAAGEAAPVKGKKSRKRVEGQREMLFPIEGKKAAAKET 299 Query: 295 KREP-KEAAKPEPKKAE--KTTRAQGTAARKKAG 325 KR+P K AK K KT A+ + A++KAG Sbjct: 300 KRKPAKRPAKTSGAKTSTTKTPAAKASTAKRKAG 333