BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0081.p (436 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208850.1| polysaccharide transporter [Bradyrhizobium s... 458 e-127 ref|YP_003322908.1| hypothetical protein Tter_1178 [Thermobaculu... 60 7e-07 ref|YP_003071068.1| EPS I polysaccharide export inner membrane p... 60 1e-06 ref|YP_002423761.1| hypothetical protein Mchl_5068 [Methylobacte... 59 1e-06 ref|YP_001642046.1| hypothetical protein Mext_4607 [Methylobacte... 59 1e-06 >ref|YP_001208850.1| polysaccharide transporter [Bradyrhizobium sp. ORS 278] emb|CAL80635.1| putative Polysaccharide transporter [Bradyrhizobium sp. ORS 278] Length = 448 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 242/408 (59%), Positives = 312/408 (76%), Gaps = 1/408 (0%) Query: 24 RLRRAG-GNVALGLIDQALLSGSAFVLTIVLANVLDINSFGRFSVAWSFSILIEAVFLRG 82 RL RAG GN++LGL+DQALLSGSAF LT+ LAN L++++FGRFSVAWSFSILIE+VFLRG Sbjct: 37 RLIRAGAGNLSLGLLDQALLSGSAFALTLALANFLEVHAFGRFSVAWSFSILIESVFLRG 96 Query: 83 LFDDGLPATAHRIPKSLWPQLRLGLYLSSLLASGALGLLLVSAGLVIVAVGGDAGRLVIA 142 LFDDGLPA A RIP+ LWPQLR GLY S+L+ SG++GL ++ AG++ V + RL +A Sbjct: 97 LFDDGLPAAAQRIPRRLWPQLRFGLYSSALVVSGSIGLAIMLAGMIGPGVPAEWSRLAVA 156 Query: 143 TGLAIPAVRLQSMFRRICYLDGRLPRALASSLTYCVALVVSAGLMIALKLAGATAAMACI 202 TGLA+PA+R+QS++RRI YLDGR RA SSL YC+AL++S +MI G AAM+CI Sbjct: 157 TGLAVPAIRMQSVYRRIAYLDGRTTRAALSSLVYCLALLISTAVMIWTGEEGPAAAMSCI 216 Query: 203 AISAALAGSLLLARTSELARPQARIFRGSLQRLFRNGRWFVATSLTYWIGSIGLIPVCGF 262 A+SA AG+L L S+LAR + ++ SL RL R GRWF+ATSLTYW+GSIGLIP C Sbjct: 217 AVSATTAGALALLHRSDLARSRRQVLVSSLTRLLRGGRWFIATSLTYWVGSIGLIPFCSL 276 Query: 263 LIGLDASASLRILLLVFAPLSQFCATMFSVRLPEIAAELRAGRRSAVAAAARENALLLGS 322 L+GL+A A+LRILLL+FAPLSQF T+ SVRLPEIA +LRAG R A+ A AR+ LLG Sbjct: 277 LLGLEAGATLRILLLIFAPLSQFNQTIVSVRLPEIAEKLRAGPRLAIRAVARDFVALLGL 336 Query: 323 IAAAYGTAVVLLGQRILALVIHGQSYEIGTGSLALMGAAMALDAVWLGLALPLFATGKPQ 382 + AYG V + G+ ++++++ +SY++G +LALM AM LD+VWLGLALPLFA G+PQ Sbjct: 337 TSVAYGAVVAMGGEWVMSIMVGSKSYQLGFANLALMALAMTLDSVWLGLALPLFAVGQPQ 396 Query: 383 RFMLSRIAGLVALCCVLPFAAEVWQVMGAVAAMVASSTASVITVVLTN 430 RF+ SR+AGL++LCC LP A +W + GA+ MV SS SV+ + TN Sbjct: 397 RFLASRLAGLLSLCCALPVAIWLWGLPGAIVGMVVSSAVSVVVSMRTN 444 >ref|YP_003322908.1| hypothetical protein Tter_1178 [Thermobaculum terrenum ATCC BAA-798] gb|ACZ42086.1| hypothetical protein Tter_1178 [Thermobaculum terrenum ATCC BAA-798] Length = 429 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 88/346 (25%), Positives = 153/346 (44%), Gaps = 38/346 (10%) Query: 30 GNVALGLIDQALLSGSAFVLTIVLANVLDINSFGRFSVAWSFSILIEAVFLRGLFDDGLP 89 G ALGLIDQAL+S F + ++LA L + FG F++ ++ A+ L GL Sbjct: 21 GKNALGLIDQALISAGNFTVMVLLARQLHPHDFGVFTLIYT------ALLLANNIQTGLI 74 Query: 90 ATAHRIPKSLWPQLRLGLYLSSLLASGALGLLLVSAGLVIVAVGGDA------GRLVIAT 143 AH + +Y ++ A L +L++ L I+A+ + LV++T Sbjct: 75 TQAHNVLAVTKKGREYNIY-TTTTAVFQLAFILLAVLLGIIALALSSIFSPGINALVLST 133 Query: 144 GLAIPAVRLQSMFRRICYLDGRLPRALASSL-TYCVALVVSAGLMIALKLAGATA--AMA 200 A+ A + Q RRI Y + RL L + +Y +V+ L + L TA ++A Sbjct: 134 ICALVAWQAQEFVRRILYTEDRLCGVLLNDFVSYGGQIVLLVLLWLTSSLTSVTALYSLA 193 Query: 201 CIAISAALAGSLLL--ARTSELARPQARIFRGSLQRLFRNGRWFVATSLTYWIGSIGLIP 258 + +A++ G+L + A SE++ R ++ G+W A + YW+ + Sbjct: 194 VTSAAASVLGALQIRHAICSEISSAIVR-------EIWDYGKWVAAGRIGYWMSVQIYVY 246 Query: 259 VCGFLIGLDASASLRILLLVFAPLSQ---FCATMFSVRLPEIAAELRAGRRSAVAAAARE 315 + L+G A+ ++ + ++ PL+ F T+ +R RA +A R+ Sbjct: 247 ITAVLVGPFAAGVIKAVQVILGPLNVPLIFLDTILPIRFS------RALDTQGIAGFKRQ 300 Query: 316 NALLLGSIAA---AYGTAVVLLGQRILALVIHGQSYEIGTGSLALM 358 L + + Y + V + IL LV +G YE +LAL Sbjct: 301 IKLSFAATSPLLIMYCSLVAIFSTEILRLV-YGPKYEQYGLTLALF 345 >ref|YP_003071068.1| EPS I polysaccharide export inner membrane protein [Methylobacterium extorquens DM4] emb|CAX27263.1| putative EPS I polysaccharide export inner membrane protein (epsE-like) [Methylobacterium extorquens DM4] Length = 439 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 122/269 (45%), Gaps = 22/269 (8%) Query: 14 VAGAMSGLLRR--LRRAGGNVALGLIDQALLSGSAFVLTIVLANVLDINSFGRFSVAWSF 71 +AGA +L R L R AL + DQAL+S F TIVLA+ L + +FG FS AW Sbjct: 11 LAGARRAVLGRKVLARGAAGPALSVADQALVSACNFATTIVLAHALGLEAFGLFSTAW-I 69 Query: 72 SILIEAVFLRGLFDDGLPATAHRIPKSLWPQLRLGLYLSSLLASGALGLLLVSAGLVIVA 131 ++L+ GL + I L + R Y L+ A L ++ G V + Sbjct: 70 AVLLTVSLQLGL----VVCPMISIGPGLGDEARPAYYAIVLVHEAA--FLTLAGGAVAIG 123 Query: 132 VG---GDAGRLVIATGLAIPAVRLQSMFRRICYLDGRLPRALA-SSLTYCVALVVSAGLM 187 + GD L +A G+A A Q RR + GR P L +L + L G + Sbjct: 124 LALAFGDRA-LGLAAGVACAAHLAQDFCRRYLFARGRPPVVLGIDALNQGIKL----GGL 178 Query: 188 IALKLAG---ATAAMACIAISAALAGSLLLARTSELARPQARIFRGSLQRLFRNGRWFVA 244 I L AG T A+ +A SAAL+ + LA +A F + +R + +GRW V Sbjct: 179 ILLSRAGMLSPTRALEVVAASAALSCLCAIPFRGALAW-RAGEFGAASRRQWHSGRWLVL 237 Query: 245 TSLTYWIGSIGLIPVCGFLIGLDASASLR 273 T L W+ G + V G L+G+ LR Sbjct: 238 TGLMQWLSGYGGLLVAGALLGVTLIGVLR 266 >ref|YP_002423761.1| hypothetical protein Mchl_5068 [Methylobacterium chloromethanicum CM4] gb|ACK85833.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] Length = 439 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 124/269 (46%), Gaps = 22/269 (8%) Query: 14 VAGAMSGLLRR--LRRAGGNVALGLIDQALLSGSAFVLTIVLANVLDINSFGRFSVAWSF 71 +AGA +L R L R AL + DQAL+S F TIVLA+ L + +FG FS AW Sbjct: 11 LAGARRAVLGRKVLARGAAGPALSVADQALVSACNFATTIVLAHALGLEAFGLFSTAW-I 69 Query: 72 SILIEAVFLRGLFDDGLPATAHRIPKSLWPQLRLGLYLSSLLASGALGLLLVSAGLVIVA 131 ++L+ GL + I L + R Y L+ A L ++ G V + Sbjct: 70 AVLLTVSLQLGL----VVCPMISIGPGLGDEARPAYYAIVLVHEAA--FLTLAGGAVAIG 123 Query: 132 VG---GDAGRLVIATGLAIPAVRLQSMFRRICYLDGRLPRALA-SSLTYCVALVVSAGLM 187 + GD L +A G+A A Q RR + GR P L +L + L AGL+ Sbjct: 124 LALAFGDRA-LGLAAGVACAAHLAQDFCRRYLFARGRPPVVLGIDALNQGIKL---AGLI 179 Query: 188 IALKLAG---ATAAMACIAISAALAGSLLLARTSELARPQARIFRGSLQRLFRNGRWFVA 244 + L AG T A+ +A SAAL+ + LA +A F + +R + +GRW V Sbjct: 180 L-LSRAGMLSPTRALEVVAASAALSCLCAIPFRGALAW-RAGEFGAASRRQWHSGRWLVL 237 Query: 245 TSLTYWIGSIGLIPVCGFLIGLDASASLR 273 T L W+ G + V G L+G+ LR Sbjct: 238 TGLMQWLSGYGGLLVAGALLGVTLIGVLR 266 >ref|YP_001642046.1| hypothetical protein Mext_4607 [Methylobacterium extorquens PA1] gb|ABY32975.1| hypothetical protein Mext_4607 [Methylobacterium extorquens PA1] Length = 439 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 124/269 (46%), Gaps = 22/269 (8%) Query: 14 VAGAMSGLLRR--LRRAGGNVALGLIDQALLSGSAFVLTIVLANVLDINSFGRFSVAWSF 71 +AGA +L R L R AL + DQAL+S F TIVLA+ L + +FG FS AW Sbjct: 11 LAGARRAVLGRKVLARGAAGPALSVADQALVSACNFATTIVLAHALGLEAFGLFSTAW-I 69 Query: 72 SILIEAVFLRGLFDDGLPATAHRIPKSLWPQLRLGLYLSSLLASGALGLLLVSAGLVIVA 131 ++L+ GL + I L + R Y L+ A L ++ G V + Sbjct: 70 AVLLTVSLQLGL----VVCPMISIGPGLGDEARPAYYAIVLVHEAA--FLTLAGGAVAIG 123 Query: 132 VG---GDAGRLVIATGLAIPAVRLQSMFRRICYLDGRLPRALA-SSLTYCVALVVSAGLM 187 + GD L +A G+A A Q RR + GR P L +L + L AGL+ Sbjct: 124 LALAFGDRA-LGLAAGVACAAHLAQDFCRRYLFARGRPPVVLGIDALNQGIKL---AGLI 179 Query: 188 IALKLAG---ATAAMACIAISAALAGSLLLARTSELARPQARIFRGSLQRLFRNGRWFVA 244 + L AG T A+ +A SAAL+ + LA +A F + +R + +GRW V Sbjct: 180 L-LSRAGMLSPTRALEVVAASAALSCLCAIPFRGALAW-RAGEFGAASRRQWHSGRWLVL 237 Query: 245 TSLTYWIGSIGLIPVCGFLIGLDASASLR 273 T L W+ G + V G L+G+ LR Sbjct: 238 TGLMQWLSGYGGLLVAGALLGVTLIGVLR 266