BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0055.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772680.1| transcriptional regulator [Bradyrhizobium japon... 437 e-121 ref|YP_001241588.1| GntR family transcriptional regulator [Brady... 333 1e-89 ref|ZP_07028690.1| transcriptional regulator, GntR family [Afipi... 327 1e-87 ref|YP_001207180.1| GntR family transcriptional regulator [Brady... 323 1e-86 ref|YP_002289669.1| transcriptional regulatory protein [Oligotro... 320 1e-85 >ref|NP_772680.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51305.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 248 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/237 (91%), Positives = 224/237 (94%), Gaps = 1/237 (0%) Query: 1 MKSAIPEAGVPITPPAAGNGSDRQEASLHGEILLRLRDYVVEGNIPEGARVPERQLCEML 60 MKS IP+ GVPI PPA GNG DRQEASLHGEILLRLRDYVVEGNIP+GARVPERQLCEML Sbjct: 4 MKSTIPDTGVPIAPPA-GNGGDRQEASLHGEILLRLRDYVVEGNIPDGARVPERQLCEML 62 Query: 61 GISRTPLREALKVLAAEGLIELLPNRGARVRRLSPRDLEELFDVMAGLESLAGRLACEII 120 GISRTPLREALKVLAAEGLIELLPNRGARVR+LS RDLEELFDVMAGLESLAGRLACE I Sbjct: 63 GISRTPLREALKVLAAEGLIELLPNRGARVRQLSQRDLEELFDVMAGLESLAGRLACEAI 122 Query: 121 TDEEIAAIERLHYEMYGHYLHRDMHGYFQTNQQIHESIVAAARNETLKATYANFAGRIRR 180 TDEEI AIE+LHYEMYGHYLHRDMHGYFQTNQ+IHESIVAAARNETLK YANFAGRIRR Sbjct: 123 TDEEITAIEQLHYEMYGHYLHRDMHGYFQTNQRIHESIVAAARNETLKTAYANFAGRIRR 182 Query: 181 VRYSANFARKRQRWAEAMREHEAILDALRRRAASELSDILFQHLRNKRAAAIDHLAE 237 VRYSANFARKRQRWAEAMREHEAILDALRRRA SELSDILF+HLRNKR AAI+HL E Sbjct: 183 VRYSANFARKRQRWAEAMREHEAILDALRRRAGSELSDILFEHLRNKRTAAIEHLTE 239 >ref|YP_001241588.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ37682.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1] Length = 251 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 166/235 (70%), Positives = 193/235 (82%), Gaps = 1/235 (0%) Query: 5 IPEAGVPITP-PAAGNGSDRQEASLHGEILLRLRDYVVEGNIPEGARVPERQLCEMLGIS 63 IP+ +P + P + S R E SLH EIL RLRDY+VEG++P+G R+ ERQLCEMLG+S Sbjct: 2 IPDIEMPPSAEPGSRTTSARDETSLHDEILARLRDYIVEGHVPDGGRLSERQLCEMLGVS 61 Query: 64 RTPLREALKVLAAEGLIELLPNRGARVRRLSPRDLEELFDVMAGLESLAGRLACEIITDE 123 RTPLREALKVLAAEGL+ELLPNRGARVR LS D+ ELFD+M GLE LAGRLACE ++DE Sbjct: 62 RTPLREALKVLAAEGLVELLPNRGARVRPLSAADIRELFDLMGGLEGLAGRLACEKMSDE 121 Query: 124 EIAAIERLHYEMYGHYLHRDMHGYFQTNQQIHESIVAAARNETLKATYANFAGRIRRVRY 183 +I IE+LH++MYG Y+ +DMHGYF NQ IH +IV AA N TL ATY + AGRIRRVR+ Sbjct: 122 DIKNIEQLHHDMYGFYIRQDMHGYFHVNQLIHRAIVDAAANATLHATYESLAGRIRRVRF 181 Query: 184 SANFARKRQRWAEAMREHEAILDALRRRAASELSDILFQHLRNKRAAAIDHLAEG 238 SANFARKR+RW+EAMREHE ILDALRRRA SELSDILFQHLRNK AAAI + AEG Sbjct: 182 SANFARKRERWSEAMREHEQILDALRRRAGSELSDILFQHLRNKGAAAIAYFAEG 236 >ref|ZP_07028690.1| transcriptional regulator, GntR family [Afipia sp. 1NLS2] gb|EFI49962.1| transcriptional regulator, GntR family [Afipia sp. 1NLS2] Length = 241 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 155/225 (68%), Positives = 189/225 (84%) Query: 23 RQEASLHGEILLRLRDYVVEGNIPEGARVPERQLCEMLGISRTPLREALKVLAAEGLIEL 82 ++E SLH E L RLRD++VEGNIP+G R+ ER+LCE+LGISRTPLREALKVLA+EG++EL Sbjct: 17 KEETSLHDETLSRLRDHIVEGNIPDGGRILERELCELLGISRTPLREALKVLASEGIVEL 76 Query: 83 LPNRGARVRRLSPRDLEELFDVMAGLESLAGRLACEIITDEEIAAIERLHYEMYGHYLHR 142 LPNRGARVR LS RDL ELFD+M GLE+L+GRLACE ITD E+A IE+LH+EMYG YL + Sbjct: 77 LPNRGARVRALSERDLHELFDLMGGLEALSGRLACENITDAEVAEIEQLHHEMYGFYLRK 136 Query: 143 DMHGYFQTNQQIHESIVAAARNETLKATYANFAGRIRRVRYSANFARKRQRWAEAMREHE 202 DMH YF+ NQ IH+ I+AA+RN TL++TYA AGRIRRVRYSANFAR+++RW EAMREHE Sbjct: 137 DMHNYFRANQAIHQKILAASRNHTLQSTYATLAGRIRRVRYSANFAREKERWGEAMREHE 196 Query: 203 AILDALRRRAASELSDILFQHLRNKRAAAIDHLAEGPDSGLETTP 247 ILDALRRRA +ELS+ILF HLRNKR AA++ + + D+ T Sbjct: 197 MILDALRRRAGAELSEILFHHLRNKRRAAMEPMQQQSDTASSATS 241 >ref|YP_001207180.1| GntR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL78963.1| putative transcriptional regulatory protein, GntR family [Bradyrhizobium sp. ORS 278] Length = 252 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 165/251 (65%), Positives = 193/251 (76%), Gaps = 4/251 (1%) Query: 1 MKSAIPEAGVP-ITPPAAGNGSDRQEASLHGEILLRLRDYVVEGNIPEGARVPERQLCEM 59 M S P+ P + P R E SLH EIL RLRDY+VEG++ +G R+ ERQLCEM Sbjct: 1 MSSTTPDTEAPSVADPGVRALPARDETSLHDEILARLRDYIVEGHVADGGRLSERQLCEM 60 Query: 60 LGISRTPLREALKVLAAEGLIELLPNRGARVRRLSPRDLEELFDVMAGLESLAGRLACEI 119 LG+SRTPLREALKVLAAEGL+ELLPNRGARVR LS D+ ELFD+M GLE LAGRLACE Sbjct: 61 LGVSRTPLREALKVLAAEGLVELLPNRGARVRPLSAADIRELFDLMGGLEGLAGRLACEK 120 Query: 120 ITDEEIAAIERLHYEMYGHYLHRDMHGYFQTNQQIHESIVAAARNETLKATYANFAGRIR 179 I DE IA IE+ H++MYG Y+ +DM GYF+ NQ IH +IV AA N TL++TY + AGRIR Sbjct: 121 IADEAIAKIEQYHHDMYGFYMRQDMQGYFRMNQLIHRAIVNAAGNATLQSTYESLAGRIR 180 Query: 180 RVRYSANFARKRQRWAEAMREHEAILDALRRRAASELSDILFQHLRNKRAAAIDHLA--- 236 RVR+SANFAR+R+RW+EAMREHE ILDALRRRA SELSDILFQHLRNK AAAI + A Sbjct: 181 RVRFSANFARRRERWSEAMREHELILDALRRRAGSELSDILFQHLRNKGAAAITYFAESL 240 Query: 237 EGPDSGLETTP 247 EGP + +P Sbjct: 241 EGPAAAPGGSP 251 >ref|YP_002289669.1| transcriptional regulatory protein [Oligotropha carboxidovorans OM5] ref|YP_004632332.1| GntR family transcriptional regulator [Oligotropha carboxidovorans OM5] gb|ACI93804.1| transcriptional regulatory protein [Oligotropha carboxidovorans OM5] gb|AEI02515.1| transcriptional regulator, GntR family [Oligotropha carboxidovorans OM4] gb|AEI06091.1| transcriptional regulator, GntR family [Oligotropha carboxidovorans OM5] Length = 232 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 154/221 (69%), Positives = 183/221 (82%) Query: 13 TPPAAGNGSDRQEASLHGEILLRLRDYVVEGNIPEGARVPERQLCEMLGISRTPLREALK 72 T P+ ++E SLH E L RLRD++VEGNIP+G R+ ER+LCE+LGISRTPLREALK Sbjct: 7 TLPSRDTAGSKEETSLHDETLSRLRDHIVEGNIPDGGRILERELCELLGISRTPLREALK 66 Query: 73 VLAAEGLIELLPNRGARVRRLSPRDLEELFDVMAGLESLAGRLACEIITDEEIAAIERLH 132 VLA+EG++ELLPNRGARVR LS +DL ELFD+M GLE+L+GRLACE ITD EIA IERLH Sbjct: 67 VLASEGIVELLPNRGARVRALSEQDLHELFDLMGGLEALSGRLACENITDAEIAEIERLH 126 Query: 133 YEMYGHYLHRDMHGYFQTNQQIHESIVAAARNETLKATYANFAGRIRRVRYSANFARKRQ 192 +EMY YLH+DMH YF NQ IH+ I+ A+RN TL+ATYA AGRIRRVRYSANFAR ++ Sbjct: 127 HEMYSFYLHKDMHNYFHANQAIHQKILEASRNHTLQATYATLAGRIRRVRYSANFARDKE 186 Query: 193 RWAEAMREHEAILDALRRRAASELSDILFQHLRNKRAAAID 233 RW EA+REHE ILDALRRR SEL +ILF+HLRNKR AA++ Sbjct: 187 RWGEAVREHELILDALRRRNGSELGEILFRHLRNKRRAAME 227