BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0042.p (397 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772669.1| hypothetical protein blr6029 [Bradyrhizobium ja... 783 0.0 ref|YP_001207172.1| putative Formyl-CoA transferase [Bradyrhizob... 654 0.0 ref|YP_001241580.1| putative formyl-CoA transferase [Bradyrhizob... 647 0.0 ref|ZP_08630839.1| hypothetical protein CSIRO_3949 [Bradyrhizobi... 613 e-173 ref|YP_002289672.1| L-carnitine dehydratase/bile acid-inducible ... 587 e-165 >ref|NP_772669.1| hypothetical protein blr6029 [Bradyrhizobium japonicum USDA 110] dbj|BAC51294.1| blr6029 [Bradyrhizobium japonicum USDA 110] Length = 409 Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/397 (94%), Positives = 387/397 (97%) Query: 1 MPFPHASEALSRLTVLDLTRVRSGPTCVRQLADWGANVIKIDALTEDAGGEQPGGPRRGS 60 MPFPHASEALSR TVLDLTRVRSGPTCVRQLADWGANVIKIDALTEDAGGEQPGGPRRGS Sbjct: 13 MPFPHASEALSRFTVLDLTRVRSGPTCVRQLADWGANVIKIDALTEDAGGEQPGGPRRGS 72 Query: 61 DFQNLHRNKRAMTLNLKDDRGLAVFKRLTAKADVVVENFRPDVKRKLGIDYESLAAINPR 120 DFQNLHRNKRAMTLNLKD+RGLAVFKRL AKADVVVENFRPDVK+KLGIDY+SLAAINPR Sbjct: 73 DFQNLHRNKRAMTLNLKDERGLAVFKRLAAKADVVVENFRPDVKKKLGIDYDSLAAINPR 132 Query: 121 IVYGSISGFGQDGPYHKRPGFDQIAQGIGGLMSITGAPGGGPMRVGIPVADLTAGLFCAM 180 IVYGSISGFGQDGPYHKRPGFDQIAQG+GGLMSITGAPG GPMRVGIPVADLTAGLFCAM Sbjct: 133 IVYGSISGFGQDGPYHKRPGFDQIAQGMGGLMSITGAPGEGPMRVGIPVADLTAGLFCAM 192 Query: 181 GILTALLEREVSGKGQWVQTSLLQAQIFMLDFQAARWLMEREVAKQAGNNHPTSIPTGVF 240 GILTALLEREVSGKGQWVQTSLLQAQIFMLDFQAARWLME+EVAKQAGNNHPTSIPTGVF Sbjct: 193 GILTALLEREVSGKGQWVQTSLLQAQIFMLDFQAARWLMEKEVAKQAGNNHPTSIPTGVF 252 Query: 241 KTSDGYINIATTGGRIWERCAQAIGAPELFGHPDYATASARSKNRDALNAEIERCTVTKS 300 KTSDGYINIATTGGRIWERCAQAIGAPEL+ HPDYATA ARSKNRDALNAEIE+ TVTKS Sbjct: 253 KTSDGYINIATTGGRIWERCAQAIGAPELYSHPDYATAPARSKNRDALNAEIEKRTVTKS 312 Query: 301 TETWVRELNEAGVPCGPIYAIDQMFEDAQVKHLGIAQDVPNDEDRHIRLVGQPVTLSRTP 360 TETWVRE N+AGVPCGPIYAIDQMFEDAQV+HLGIAQDVPNDEDRHIRLVGQPVTLSRTP Sbjct: 313 TETWVREFNDAGVPCGPIYAIDQMFEDAQVRHLGIAQDVPNDEDRHIRLVGQPVTLSRTP 372 Query: 361 SKMVVRPPEFGEQTDEVLKEFGFGSDEIAKLRDAKVV 397 S MV RPPEFGEQTDEVLKEFGFG+DEI KLRDAKVV Sbjct: 373 STMVARPPEFGEQTDEVLKEFGFGADEIGKLRDAKVV 409 >ref|YP_001207172.1| putative Formyl-CoA transferase [Bradyrhizobium sp. ORS 278] emb|CAL78955.1| putative Formyl-CoA transferase [Bradyrhizobium sp. ORS 278] Length = 396 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/397 (79%), Positives = 344/397 (86%), Gaps = 1/397 (0%) Query: 1 MPFPHASEALSRLTVLDLTRVRSGPTCVRQLADWGANVIKIDALTEDAGGEQPGGPRRGS 60 M FP AS+ALSR TVLDLTRVR+GPTC RQ ADWGANVIKIDA+ ED GGE GGPRRGS Sbjct: 1 MAFPRASKALSRFTVLDLTRVRAGPTCARQFADWGANVIKIDAMMED-GGEALGGPRRGS 59 Query: 61 DFQNLHRNKRAMTLNLKDDRGLAVFKRLTAKADVVVENFRPDVKRKLGIDYESLAAINPR 120 DFQNLHRNKRAMTLNLKD RG+ VF RL +ADVV+EN+RPDVK KLGIDYE++ +NPR Sbjct: 60 DFQNLHRNKRAMTLNLKDPRGVDVFMRLAKQADVVIENYRPDVKTKLGIDYEAVRKVNPR 119 Query: 121 IVYGSISGFGQDGPYHKRPGFDQIAQGIGGLMSITGAPGGGPMRVGIPVADLTAGLFCAM 180 IVYGSISGFGQDGPY KRPGFDQIAQG+GGLMSITGAPG GPMR GIP+ADL+AGL CAM Sbjct: 120 IVYGSISGFGQDGPYSKRPGFDQIAQGMGGLMSITGAPGEGPMRAGIPIADLSAGLSCAM 179 Query: 181 GILTALLEREVSGKGQWVQTSLLQAQIFMLDFQAARWLMEREVAKQAGNNHPTSIPTGVF 240 GILTALLEREVSG+GQWVQTSLLQAQIFMLDFQAARWLME++VA QAGNNHPTSIPTGVF Sbjct: 180 GILTALLEREVSGEGQWVQTSLLQAQIFMLDFQAARWLMEKDVAPQAGNNHPTSIPTGVF 239 Query: 241 KTSDGYINIATTGGRIWERCAQAIGAPELFGHPDYATASARSKNRDALNAEIERCTVTKS 300 KTSDGYINIA TGGRIWER Q +GAPE HPDYATA ARSKNRDALNAEI T+ K+ Sbjct: 240 KTSDGYINIAATGGRIWERLCQTLGAPEWIDHPDYATAPARSKNRDALNAEINARTLAKT 299 Query: 301 TETWVRELNEAGVPCGPIYAIDQMFEDAQVKHLGIAQDVPNDEDRHIRLVGQPVTLSRTP 360 +E WV ELN AGVPCGPIYAIDQMFED QVKHLG+AQ VP+D+ R I LV QP TLSRTP Sbjct: 300 SEQWVAELNAAGVPCGPIYAIDQMFEDPQVKHLGMAQPVPSDDGRDITLVAQPFTLSRTP 359 Query: 361 SKMVVRPPEFGEQTDEVLKEFGFGSDEIAKLRDAKVV 397 S+M RPPEFGEQT+E+L EFGF EIA LR +VV Sbjct: 360 SRMAARPPEFGEQTEEILLEFGFTDGEIADLRLHRVV 396 >ref|YP_001241580.1| putative formyl-CoA transferase [Bradyrhizobium sp. BTAi1] gb|ABQ37674.1| putative Formyl-CoA transferase [Bradyrhizobium sp. BTAi1] Length = 396 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/397 (78%), Positives = 343/397 (86%), Gaps = 1/397 (0%) Query: 1 MPFPHASEALSRLTVLDLTRVRSGPTCVRQLADWGANVIKIDALTEDAGGEQPGGPRRGS 60 M FP AS+ALSR TVLDLTRVR+GPTC RQ ADWGANVIKIDA+ ED GGE GGPRRG+ Sbjct: 1 MAFPRASKALSRFTVLDLTRVRAGPTCARQFADWGANVIKIDAMMED-GGEALGGPRRGA 59 Query: 61 DFQNLHRNKRAMTLNLKDDRGLAVFKRLTAKADVVVENFRPDVKRKLGIDYESLAAINPR 120 DFQNLHRNKRAMTLNLKD +G+ VF RL +ADVV+EN+RPDVK KLGIDYE++ +NPR Sbjct: 60 DFQNLHRNKRAMTLNLKDPKGVDVFMRLAKQADVVIENYRPDVKTKLGIDYEAVRKVNPR 119 Query: 121 IVYGSISGFGQDGPYHKRPGFDQIAQGIGGLMSITGAPGGGPMRVGIPVADLTAGLFCAM 180 IVYGSISGFGQDGPY KRPGFDQIAQG+GGLMSITGAPG GPMR GIP+ADL+AGL CAM Sbjct: 120 IVYGSISGFGQDGPYAKRPGFDQIAQGMGGLMSITGAPGEGPMRAGIPIADLSAGLSCAM 179 Query: 181 GILTALLEREVSGKGQWVQTSLLQAQIFMLDFQAARWLMEREVAKQAGNNHPTSIPTGVF 240 GILTALLEREVSG+GQWVQTSLLQAQIFMLDFQAARWLME++VA QAGNNHPTSIPTGVF Sbjct: 180 GILTALLEREVSGEGQWVQTSLLQAQIFMLDFQAARWLMEKDVAPQAGNNHPTSIPTGVF 239 Query: 241 KTSDGYINIATTGGRIWERCAQAIGAPELFGHPDYATASARSKNRDALNAEIERCTVTKS 300 KTSDGYINIA TGGRIWER +GAPE +PDYATA ARSKNRDALNAEI + TV K+ Sbjct: 240 KTSDGYINIAATGGRIWERLCHTLGAPEWIDNPDYATAPARSKNRDALNAEINQRTVAKT 299 Query: 301 TETWVRELNEAGVPCGPIYAIDQMFEDAQVKHLGIAQDVPNDEDRHIRLVGQPVTLSRTP 360 +E WV ELN AGVPCGPIYAIDQMFED QVKHLG+AQ V +D+ R I LV QP TLSRTP Sbjct: 300 SEQWVAELNAAGVPCGPIYAIDQMFEDPQVKHLGMAQQVASDDGRDITLVAQPFTLSRTP 359 Query: 361 SKMVVRPPEFGEQTDEVLKEFGFGSDEIAKLRDAKVV 397 S+M RPPEFGEQT+E+L EFGF EIA LR +VV Sbjct: 360 SRMAARPPEFGEQTEEILSEFGFTDGEIADLRLHRVV 396 >ref|ZP_08630839.1| hypothetical protein CSIRO_3949 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06371.1| hypothetical protein CSIRO_3949 [Bradyrhizobiaceae bacterium SG-6C] Length = 394 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 299/397 (75%), Positives = 334/397 (84%), Gaps = 3/397 (0%) Query: 1 MPFPHASEALSRLTVLDLTRVRSGPTCVRQLADWGANVIKIDALTEDAGGEQPGGPRRGS 60 M FP AS ALSR TVLDLTR+RSGPT VRQL+DWGANVIKI+A T+ A EQPGGPR G Sbjct: 1 MTFPRASSALSRFTVLDLTRIRSGPTAVRQLSDWGANVIKIEAPTDLADSEQPGGPRHGP 60 Query: 61 DFQNLHRNKRAMTLNLKDDRGLAVFKRLTAKADVVVENFRPDVKRKLGIDYESLAAINPR 120 DFQNLHRNKRAMTLNLKD +GL VFKRL AKADV+VENFRPDVK KLGIDYES+ AINPR Sbjct: 61 DFQNLHRNKRAMTLNLKDPKGLEVFKRLAAKADVIVENFRPDVKSKLGIDYESMRAINPR 120 Query: 121 IVYGSISGFGQDGPYHKRPGFDQIAQGIGGLMSITGAPGGGPMRVGIPVADLTAGLFCAM 180 +VY SISGFGQDGPY KRPGFDQIAQG+GGLMSITG PG GP+R GIPVADLTAGLFCA+ Sbjct: 121 LVYASISGFGQDGPYAKRPGFDQIAQGMGGLMSITGLPGQGPVRAGIPVADLTAGLFCAL 180 Query: 181 GILTALLEREVSGKGQWVQTSLLQAQIFMLDFQAARWLMEREVAKQAGNNHPTSIPTGVF 240 GI+TALLER+VSG+GQWVQTSLLQAQIFMLDFQAARWL++ +V +QAGNNHPTSIPTGVF Sbjct: 181 GIMTALLERDVSGEGQWVQTSLLQAQIFMLDFQAARWLVDGDVPQQAGNNHPTSIPTGVF 240 Query: 241 KTSDGYINIATTGGRIWERCAQAIGAPELFGHPDYATASARSKNRDALNAEIERCTVTKS 300 KTSD +INIATTGG IW R AQAI AP+L HPDYAT + RSKNRDALNA I + Sbjct: 241 KTSDSFINIATTGGAIWARFAQAIDAPDLLTHPDYATIALRSKNRDALNAAIGIYMAKRP 300 Query: 301 TETWVRELNEAGVPCGPIYAIDQMFEDAQVKHLGIAQDVPNDEDRHIRLVGQPVTLSRTP 360 T+ W+ LN AGVPCGPIY+I+++F+DAQVKHLGIAQ +P D +LVGQP TLSRTP Sbjct: 301 TQEWIEILNRAGVPCGPIYSINEVFDDAQVKHLGIAQPLP---DGGKQLVGQPFTLSRTP 357 Query: 361 SKMVVRPPEFGEQTDEVLKEFGFGSDEIAKLRDAKVV 397 S+M RPP GEQT +VL EFGF EIA L+ +KVV Sbjct: 358 SRMAARPPLVGEQTRDVLTEFGFSEQEIASLQQSKVV 394 >ref|YP_002289672.1| L-carnitine dehydratase/bile acid-inducible protein F [Oligotropha carboxidovorans OM5] ref|YP_004632329.1| CoA-transferase family III [Oligotropha carboxidovorans OM5] gb|ACI93807.1| L-carnitine dehydratase/bile acid-inducible protein F [Oligotropha carboxidovorans OM5] gb|AEI02512.1| CoA-transferase family III [Oligotropha carboxidovorans OM4] gb|AEI06088.1| CoA-transferase family III [Oligotropha carboxidovorans OM5] Length = 397 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 286/397 (72%), Positives = 320/397 (80%) Query: 1 MPFPHASEALSRLTVLDLTRVRSGPTCVRQLADWGANVIKIDALTEDAGGEQPGGPRRGS 60 M P AS ALSR TVLDLTRVR+GPT VRQLADWGANV+K++A T+ EQ GG R G Sbjct: 1 MSAPQASSALSRFTVLDLTRVRAGPTAVRQLADWGANVVKLEAPTDVPDDEQLGGARHGG 60 Query: 61 DFQNLHRNKRAMTLNLKDDRGLAVFKRLTAKADVVVENFRPDVKRKLGIDYESLAAINPR 120 DFQNLHRNKRAMT++LK + G F R+ KADVVVENFRPDVK +LGIDYE+L INPR Sbjct: 61 DFQNLHRNKRAMTIDLKSEAGKQTFYRMVEKADVVVENFRPDVKARLGIDYETLRKINPR 120 Query: 121 IVYGSISGFGQDGPYHKRPGFDQIAQGIGGLMSITGAPGGGPMRVGIPVADLTAGLFCAM 180 IVY SISGFGQDGPY KRPGFDQIAQG+GGLMSITG PG GPMRVGIP+ADLTAGLFCAM Sbjct: 121 IVYASISGFGQDGPYAKRPGFDQIAQGLGGLMSITGEPGRGPMRVGIPIADLTAGLFCAM 180 Query: 181 GILTALLEREVSGKGQWVQTSLLQAQIFMLDFQAARWLMEREVAKQAGNNHPTSIPTGVF 240 GILTALLEREVSG+GQWVQTSLLQ+QIFMLDFQ ARWL+++EV QAGNNHPT IPTGVF Sbjct: 181 GILTALLEREVSGEGQWVQTSLLQSQIFMLDFQTARWLLQKEVPPQAGNNHPTIIPTGVF 240 Query: 241 KTSDGYINIATTGGRIWERCAQAIGAPELFGHPDYATASARSKNRDALNAEIERCTVTKS 300 +TSDGY+NIA TG IWER A AIG PEL PDYA+ RSKNRDALNA IE T T++ Sbjct: 241 QTSDGYVNIAATGLVIWERLANAIGKPELVSDPDYASPKMRSKNRDALNAIIEAVTRTRT 300 Query: 301 TETWVRELNEAGVPCGPIYAIDQMFEDAQVKHLGIAQDVPNDEDRHIRLVGQPVTLSRTP 360 + WV LN+AGVPCGPI+ ID++F+D QVKHL + Q VP +R +RLV QP TLSRTP Sbjct: 301 SAEWVEILNKAGVPCGPIHTIDKVFDDPQVKHLDLVQKVPGTGERDVRLVKQPFTLSRTP 360 Query: 361 SKMVVRPPEFGEQTDEVLKEFGFGSDEIAKLRDAKVV 397 SK V PPE GE TDE+L EFGF EIA L+ KVV Sbjct: 361 SKFVAPPPEVGEHTDELLHEFGFSDAEIATLKQDKVV 397