BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0028.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01044608.1| hypothetical protein NB311A_03739 [Nitrobacte... 446 e-123 ref|YP_317159.1| hypothetical protein Nwi_0540 [Nitrobacter wino... 443 e-122 ref|ZP_03131712.1| Carbohydrate-binding CenC domain protein [Cht... 185 9e-45 ref|YP_004197719.1| hypothetical protein GM18_0965 [Geobacter sp... 164 3e-38 ref|YP_003997390.1| glycosyl hydrolase family 98 carbohydrate bi... 130 2e-28 >ref|ZP_01044608.1| hypothetical protein NB311A_03739 [Nitrobacter sp. Nb-311A] gb|EAQ37389.1| hypothetical protein NB311A_03739 [Nitrobacter sp. Nb-311A] Length = 387 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/350 (60%), Positives = 263/350 (75%), Gaps = 2/350 (0%) Query: 1 VGALRWDAWYAPGSTPTKAVETSLSPQQYHWRVPFFAKETTGKSRSEIAFPEITQQTIDK 60 VGA+RWDAWY+PGSTPT+AVE SLSP +Y WR PFFAK ++ + ++FP IT + +DK Sbjct: 39 VGAIRWDAWYSPGSTPTEAVEKSLSPGKYRWRAPFFAKSSSHDLK-HLSFPPITPEEMDK 97 Query: 61 EIKQAVFAGIDYWAFVAYGSADPMSRALKVFRESPIKNEISYCIFTEFPRWGXHDKPSPL 120 EI+QAVFAG+DYWAFVAYGS PMS+AL FR S +++ YC+FTE RWG ++P+ L Sbjct: 98 EIRQAVFAGLDYWAFVAYGSNHPMSKALYQFRASAGNDKLRYCLFTELDRWGSRNRPTTL 157 Query: 121 IDEHVKLMGDSNYLKVAGGRPLYFLGFIHVADVEKRWGGIENLRAQIEQFRARVKAAGHG 180 EH+ L+ D NYL+V+G RPLYFLGFI A +E+ W GI LR QIE+FR+ AG Sbjct: 158 PQEHIGLLADRNYLRVSGDRPLYFLGFIAPAAIERNWKGIAGLREQIERFRSNAAEAGLA 217 Query: 181 DPYLVLTGDKKLLNEQGAFLTADAVSSYAGVYGSVRGSYADLTRGAERDWNELAKSRLPV 240 PY+VL GD+ L + ++ DA SYA G+ RGS+A+L R AER WN L+ RLPV Sbjct: 218 SPYIVLAGDQNFLIREAKYIGGDATGSYALTVGNGRGSFAELARFAERGWNALSHGRLPV 277 Query: 241 IPTVMTGWDRRPRIERPVPWEAKQRPGVGMENFFIAPTGAELSDHLHRSIEWRAAQPGEM 300 +PTVMTGWDRRPRIE PVPWE KQRPG GMENFF APT EL+DHL R++ W AA+P + Sbjct: 278 VPTVMTGWDRRPRIEHPVPWETKQRPGEGMENFFTAPTKKELADHLARALGWVAARPPDE 337 Query: 301 KSPAILIYAWNENDEGGWLVPTLPCKTERLEALRKVLKDPQSKQR-PNLC 349 ++PA+LIYAWNENDEGGWL+PTLPC+T+RL+ALR+VLK + R P LC Sbjct: 338 QAPAVLIYAWNENDEGGWLMPTLPCQTDRLDALRQVLKKAATPSRKPELC 387 >ref|YP_317159.1| hypothetical protein Nwi_0540 [Nitrobacter winogradskyi Nb-255] gb|ABA03807.1| hypothetical protein Nwi_0540 [Nitrobacter winogradskyi Nb-255] Length = 381 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/350 (59%), Positives = 260/350 (74%), Gaps = 2/350 (0%) Query: 1 VGALRWDAWYAPGSTPTKAVETSLSPQQYHWRVPFFAKETTGKSRSEIAFPEITQQTIDK 60 VGA+RWDAWY+PGS PT+AVE SLSP++Y WR PFFA+ + S ++FP IT + +DK Sbjct: 33 VGAIRWDAWYSPGSAPTEAVENSLSPEKYRWRAPFFARGSAHDPAS-LSFPPITPEEMDK 91 Query: 61 EIKQAVFAGIDYWAFVAYGSADPMSRALKVFRESPIKNEISYCIFTEFPRWGXHDKPSPL 120 EI+QA FAG+DYWAFVAYGS PMS+AL FR S +++ YC+FTE RWG +KP+ L Sbjct: 92 EIRQAAFAGLDYWAFVAYGSHHPMSKALYQFRASAESDKLGYCLFTELDRWGSRNKPTTL 151 Query: 121 IDEHVKLMGDSNYLKVAGGRPLYFLGFIHVADVEKRWGGIENLRAQIEQFRARVKAAGHG 180 + EH+ LM D NYL+V+G RPLYFLGFI A +E+ W G+ LR QIE+FR+ +G Sbjct: 152 LQEHIGLMADRNYLRVSGDRPLYFLGFIAPASIERNWKGVAGLREQIEKFRSMAAVSGLA 211 Query: 181 DPYLVLTGDKKLLNEQGAFLTADAVSSYAGVYGSVRGSYADLTRGAERDWNELAKSRLPV 240 DPY+VL GD+ L + + DA SYA G+ RGS++DLTR AER WNEL LPV Sbjct: 212 DPYIVLAGDRNFLMREARNIGGDATGSYALTVGNGRGSFSDLTRIAERGWNELGNGHLPV 271 Query: 241 IPTVMTGWDRRPRIERPVPWEAKQRPGVGMENFFIAPTGAELSDHLHRSIEWRAAQPGEM 300 +PTVMTGWDRRPRIE PVPWE KQRPG G+ENFF APT EL+DHL R+++W A+P Sbjct: 272 VPTVMTGWDRRPRIENPVPWEKKQRPGEGIENFFAAPTKKELADHLARALDWVGARPQGE 331 Query: 301 KSPAILIYAWNENDEGGWLVPTLPCKTERLEALRKVLKDPQSKQR-PNLC 349 ++P +LIYAWNENDEGGWL+PTLPC+T+RL+ALR+VLK + R P LC Sbjct: 332 QAPVVLIYAWNENDEGGWLMPTLPCQTDRLDALRQVLKKTAAPVRKPELC 381 >ref|ZP_03131712.1| Carbohydrate-binding CenC domain protein [Chthoniobacter flavus Ellin428] gb|EDY17581.1| Carbohydrate-binding CenC domain protein [Chthoniobacter flavus Ellin428] Length = 655 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 172/359 (47%), Gaps = 56/359 (15%) Query: 1 VGALRWDAWYAPGSTPT----------KAVETSLSPQQYHWRVPFFAKET---TGKSRSE 47 VGA+RWD G TPT + VE +L P QYH+R+PFF ET T ++R Sbjct: 36 VGAIRWDG--NTGDTPTFGWANGNYVGQQVERALGPNQYHFRLPFFGVETGTDTAQAR-- 91 Query: 48 IAFPEITQQTIDKEIKQAVFAGIDYWAFVAYGSADPMSRALKVFRESPIKNEISYCIFTE 107 E+TQ +D++I A AGIDYWAFV Y M A ++ S K+ ++YC Sbjct: 92 ----ELTQAVMDRDIIYATTAGIDYWAFVFYPDGSGMDTARNLYSSSAYKSYVNYCFV-- 145 Query: 108 FPRWGXHDKPSPLIDEHVKLMGDSNYLKVAGGRPLYFL---GFIHVADVEKRWGGIENLR 164 P+ V SNY KV G RPL ++ G +D I NLR Sbjct: 146 ----ASGQMPASYFSTLVTKFAQSNYQKVLGNRPLLYIFGTGVYSASD-------ITNLR 194 Query: 165 AQIEQFRARVKAAGHGDPYLV-LTGDKKLLNEQGAFLTADAVSSYAG--VYGSVRGSYAD 221 Q AG G PY+V +T + + + ADA+SSY + G++ Y+ Sbjct: 195 NQ-------TVTAGLGTPYIVVMTFSASAASTEATNIGADAISSYCSPEIDGAL---YST 244 Query: 222 LTRGAERDWNELAKSRLPVIPTVMTGWDRRPRIERPVPWEAKQRPGVGMENFFIAPTGAE 281 L +WN + V+P V +GWD RPRI+ PV W + + T + Sbjct: 245 LVSAENSNWNSFMATGTKVVPWVTSGWDPRPRIDHPVTWTSYPS-----TEWCQTATPWQ 299 Query: 282 LSDHLHRSIEWRAAQPGEMKSPAILIYAWNENDEGGWLVPTLPCKTERLEALRKVLKDP 340 ++ HL + W + P + +++YAWNE DEGGWL PTL T+RL+ L+ +L DP Sbjct: 300 IASHLQEGLNWVDSNPTVADANTVILYAWNEFDEGGWLCPTLYTGTDRLDMLKAIL-DP 357 >ref|YP_004197719.1| hypothetical protein GM18_0965 [Geobacter sp. M18] gb|ADW12443.1| hypothetical protein GM18_0965 [Geobacter sp. M18] Length = 393 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 121/351 (34%), Positives = 172/351 (49%), Gaps = 27/351 (7%) Query: 1 VGALRWDAWYAPGSTPTKAVETSLSPQQYHWRVPFFAKETTGKSRSEIAFPEITQQTIDK 60 VGA+RWDAWYA GS E +LSP+Q+ R+PF+A+ T +A + +Q+ +D+ Sbjct: 45 VGAIRWDAWYA-GSP----YEYNLSPRQWQDRLPFYAQRTRD---GRVAVRDDSQEVMDR 96 Query: 61 EIKQAVFAGIDYWAFVAYGSADP-----MSRALKVFRESPIKNEISYCIFTEFPRWGXHD 115 EI A AG+DYWAF Y + P M++ LK + S K EI++C+ E G + Sbjct: 97 EISLAGEAGLDYWAFCYYATKRPPRLMQMNQGLKRYLASRRKGEINFCLILEANHLGPVE 156 Query: 116 KPSPLIDEHVKLMGDSNYLKVAGGRPLYFLGFIHVADVEKRWGGIEN-LRAQIEQFRARV 174 + V L + + VAG RPL F I KRW G + +++ + Q Sbjct: 157 DWPKTVQRLVALFREPTFQTVAGNRPLVF---IFDPPALKRWAGSDGAVKSMLAQLDRAA 213 Query: 175 KAAGHGDPYLVLTGDKKLLNEQGAF-LTADAVSSYAGVYGSVRGS--YADLTRGAERDWN 231 AG +PYLV A+ DA+S Y G ++ L R W Sbjct: 214 VGAGLQEPYLVAQWGTATAGSSWAYRFGLDAISDYTHPEKGDDGELPFSALADANRRFWE 273 Query: 232 ELAKSRLPVIPTVMTGWDRRPRIERPVPWEAKQRPGVGMENFFIAPTGAELSDHLHRSIE 291 E +P V GWD RPR R P +A + G +++ PT EL+ HL +I+ Sbjct: 274 ECKALAQQTVPVVNVGWDNRPR--RTSPEQALKLRG----PWYVPPTPDELASHLRMAIQ 327 Query: 292 WRAAQPGEMKSPAILIYAWNENDEGGWLVPTLPCKTERLEALRKVLKDPQS 342 W P ++ AILIYAWNE DEGG LVPT RL+A++ L+ Q+ Sbjct: 328 WERENPAYTEANAILIYAWNELDEGG-LVPTRSEGNARLQAVKTALQVRQT 377 >ref|YP_003997390.1| glycosyl hydrolase family 98 carbohydrate binding module [Leadbetterella byssophila DSM 17132] gb|ADQ17037.1| Glycosyl hydrolase family 98 putative carbohydrate binding module [Leadbetterella byssophila DSM 17132] Length = 841 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/364 (29%), Positives = 160/364 (43%), Gaps = 55/364 (15%) Query: 1 VGALRWDAWY--APGSTPTKAVETSLSPQQYHWRVPFFAKETTGKSRS------------ 46 VG +RWD W A GS + + SL+P QY R+PFF E T ++ S Sbjct: 45 VGVIRWDMWDNGAHGSNSNQT-QISLNPSQYRDRIPFFGVENTPRTVSYSKWCEDHQYTY 103 Query: 47 ----EIAFPEITQQTIDKEIKQAVFAGIDYWAFVAYGSADPMSRALKVFRESPIKNEISY 102 I +Q +D+EI A AGIDY+AF YG AD S L SP K+++ + Sbjct: 104 YENISITIDGNSQTVMDQEIAYAYDAGIDYFAFNKYG-ADFYSYNLYKSSTSPYKSKVKF 162 Query: 103 CIFTEFPRWGXHDKPSPLIDEHVKLMGDSNYLKVAGGRPLYFLGFIHVADVEKRWGGIEN 162 T P+ +D S+Y K+AGGRPL ++ + E Sbjct: 163 TYITGV------STPNSDLDYIALDFQRSDYQKIAGGRPLLYVDY----------NNYEM 206 Query: 163 LRAQIEQFRARVKAAGH------GDPYLVLTGDKKLLNEQGAFLTADAVSSYA----GVY 212 A + + A +++ G+PYLV+ Q ADA S Y G Y Sbjct: 207 SSATADAYLASMRSYFQNNYPSVGNPYLVVL----CYGCQSEISNADAFSQYTTEPGGKY 262 Query: 213 GSVRGSYADLTRGAERDWNELAKSRLPVIPTVMTGWDRRPRIERPVPWEAKQRPGVGMEN 272 G Y ++ W +A S+ V+P + G+DRRPRI+ V WE + Sbjct: 263 GDFSFEY--ISTSQRNGWQSVANSK-NVVPWISVGYDRRPRIDFTVDWERDSTCNAQHQY 319 Query: 273 FFIAPTGA--ELSDHLHRSIEWRAAQPGEMKSPAILIYAWNENDEGGWLVPTLPCKTERL 330 T + ++++ + + + P + + +LIYAWNE+DEGGW+ PT+ T + Sbjct: 320 NHWGETASLQQITNEIIAAKNFITNNPSKTPANTMLIYAWNEHDEGGWICPTIVPGTSNI 379 Query: 331 EALR 334 + R Sbjct: 380 DRSR 383