BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0072.0017.p         (360 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003512033.1| TetR family transcriptional regulator [Stack...    40   0.74 
ref|ZP_01015504.1| Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA d...    38   2.3  
ref|ZP_02882410.1| transcriptional regulator, LacI family [Burkh...    37   5.8  

>ref|YP_003512033.1| TetR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gb|ADD42940.1| transcriptional regulator, TetR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 225

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 239 RDASRRLDLLKVVAPRHHSPGGDQIVRLELERPRDASDRRIPEIEMKQRFRAQQMGAGAR 298
           RD +++LD+   V   HH  G D++ R  +ER   A DR  PE++    FRA    A A+
Sbjct: 38  RDLAKKLDVAPSVI-YHHIGGKDELSRCVVERVITAFDRPDPELDWPDWFRALLYPARAK 96

Query: 299 MRQDPAAAV 307
           +R  P  A+
Sbjct: 97  LRAYPGVAM 105


>ref|ZP_01015504.1| Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central
           region:Acyl-CoA dehydrogenase, N-terminal
           [Maritimibacter alkaliphilus HTCC2654]
 gb|EAQ10908.1| Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central
           region:Acyl-CoA dehydrogenase, N-terminal
           [Rhodobacterales bacterium HTCC2654]
          Length = 369

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 211 VDAGAAVLAALFEQQQGAPDRIRIVITPRDA--SRRLDLLKVVAPRHHSPGGDQIVRLEL 268
           + AG AV+AA  ++ +GA D I + + P DA   +   +L+++   HH+PG  ++   ++
Sbjct: 149 IKAGQAVVAAYTDRSKGAKDGISLFLVPADAPGYKLAGILELMG--HHTPGVAELAFDDV 206

Query: 269 ERPRDA 274
           E P DA
Sbjct: 207 ELPADA 212


>ref|ZP_02882410.1| transcriptional regulator, LacI family [Burkholderia graminis
           C4D1M]
 gb|EDT11613.1| transcriptional regulator, LacI family [Burkholderia graminis
           C4D1M]
          Length = 339

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 27  AGLAERAVDRADKAKIVLVGQQPDAELGGEVVEQALDVGLG---RGIIH 72
           +G+A    +  DKA +VL+G +  AE   ++ E+A+DV LG   RGI+H
Sbjct: 257 SGIAAALQESGDKAHLVLIGHECTAETRSQLSERAIDVILGQDVRGIVH 305