BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0072.0006.p         (170 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_578229.1| hypothetical protein Nham_3023 [Nitrobacter ham...    93   1e-17
ref|NP_949922.1| hypothetical protein RPA4588 [Rhodopseudomonas ...    85   3e-15
ref|YP_004111052.1| hypothetical protein Rpdx1_4773 [Rhodopseudo...    80   1e-13
ref|YP_484626.1| hypothetical protein RPB_1005 [Rhodopseudomonas...    79   2e-13
ref|YP_002975423.1| VanZ family protein [Rhizobium leguminosarum...    78   4e-13

>ref|YP_578229.1| hypothetical protein Nham_3023 [Nitrobacter hamburgensis X14]
 gb|ABE63769.1| conserved hypothetical membrane protein [Nitrobacter hamburgensis
           X14]
          Length = 110

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 60/96 (62%)

Query: 54  AGWLALAFIAFVTLSPIQDRPSLFHPQIEHFAAFAVMALAFVLGYPRRTALIVLFVIFSA 113
           A WL+LAFI F TLSPI  RP +    ++ FAAFA   L F L YPRR  L+V  V+  A
Sbjct: 9   AAWLSLAFIVFATLSPIDLRPQVAGVGLDRFAAFAATGLLFGLAYPRRPGLVVALVLCGA 68

Query: 114 FTLEAMQFLTPDRHGRLIDAIVKVAGGLAGVGVGRF 149
             LE  Q +T DRHGRL D  VK+AGG  G+ + +F
Sbjct: 69  CILEMTQLITTDRHGRLPDLFVKMAGGSTGILIAQF 104


>ref|NP_949922.1| hypothetical protein RPA4588 [Rhodopseudomonas palustris CGA009]
 ref|YP_001994032.1| hypothetical protein Rpal_5068 [Rhodopseudomonas palustris TIE-1]
 emb|CAE30028.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gb|ACF03557.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 121

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 53  IAGWLALAFIAFVTLSPIQDRPSL-FHPQIEHFAAFAVMALAFVLGYPRRTALIVLFVIF 111
           IA WL LA IAF TLSPI  RP+    P IE F AFAV+   F   YPR      + V+ 
Sbjct: 16  IAAWLCLAGIAFATLSPIGLRPTTGLSPSIERFVAFAVVGALFGAAYPRYILFAAMIVLG 75

Query: 112 SAFTLEAMQFLTPDRHGRLIDAIVKVAGGLAGVGVG 147
           +A   E +Q L P RHGRL DA VK+AGG  G+  G
Sbjct: 76  AAVLFELLQVLEPSRHGRLFDASVKLAGGTIGLAAG 111


>ref|YP_004111052.1| hypothetical protein Rpdx1_4773 [Rhodopseudomonas palustris DX-1]
 gb|ADU46319.1| hypothetical protein Rpdx1_4773 [Rhodopseudomonas palustris DX-1]
          Length = 119

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 53  IAGWLALAFIAFVTLSPIQDRPSL-FHPQIEHFAAFAVMALAFVLGYPRRTALIVLFVIF 111
           IA W  LA IAF TLSPI  RP+    P IE FAAFA++   F   YPR        VI 
Sbjct: 14  IAAWACLAGIAFATLSPIGLRPTTGVSPSIERFAAFALVGALFAAAYPRYILFAAAIVIG 73

Query: 112 SAFTLEAMQFLTPDRHGRLIDAIVKVAGGLAGVGVG 147
           +A  LE +Q L P RHGRL DA VK+AGG  G+  G
Sbjct: 74  AAVLLELIQLLEPSRHGRLFDASVKLAGGTLGLAAG 109


>ref|YP_484626.1| hypothetical protein RPB_1005 [Rhodopseudomonas palustris HaA2]
 gb|ABD05715.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 119

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 53  IAGWLALAFIAFVTLSPIQDRPSL-FHPQIEHFAAFAVMALAFVLGYPRRTALIVLFVIF 111
           +A WL LAF+A  TLSP+  RP+  + P IE F AFA++   F   YPR        V+ 
Sbjct: 14  VAAWLGLAFVAMATLSPLGLRPTTGWPPSIERFLAFALVGGLFAAAYPRYILFAAAIVLG 73

Query: 112 SAFTLEAMQFLTPDRHGRLIDAIVKVAGGLAGVGVG 147
           +A   E +Q L P RHGRL DA VK++GG  G+  G
Sbjct: 74  AALLFEILQVLAPSRHGRLFDAAVKLSGGTVGLIAG 109


>ref|YP_002975423.1| VanZ family protein [Rhizobium leguminosarum bv. trifolii WSM1325]
 gb|ACS55884.1| VanZ family protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 178

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 1/102 (0%)

Query: 47  IRRFGVIAGWLALAFIAFVTLSPIQDRP-SLFHPQIEHFAAFAVMALAFVLGYPRRTALI 105
           I +F     WL LAFI F T+SPI +RP ++    ++  AA+ ++ LAF LGYP++  ++
Sbjct: 57  IFKFAKPLAWLLLAFIIFATVSPIGERPDTVTTVDVDRAAAYLLVGLAFALGYPKQWKMV 116

Query: 106 VLFVIFSAFTLEAMQFLTPDRHGRLIDAIVKVAGGLAGVGVG 147
            + +I  AF +E +Q+L P RH RL DA +K  G   G+  G
Sbjct: 117 AVLLIVGAFAIEYLQYLAPTRHPRLHDASIKAMGAALGLLAG 158