BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0072.0005.p         (220 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08629310.1| two-component response regulator [Bradyrhizob...   418   e-115
ref|YP_576715.1| two component transcriptional regulator [Nitrob...   417   e-115
ref|ZP_07026739.1| two component transcriptional regulator, wing...   416   e-114
ref|YP_004109889.1| winged helix family two component transcript...   414   e-114
ref|NP_947260.1| two-component transcriptional regulator FeuP [R...   414   e-114

>ref|ZP_08629310.1| two-component response regulator [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP07803.1| two-component response regulator [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 231

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/219 (91%), Positives = 211/219 (96%)

Query: 1   VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60
           +RLLVVEDDPDLNRQLTTAL+DAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI
Sbjct: 1   MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  SVLEAWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRAT 120
           SVLEAWRRNKR MPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR+ 
Sbjct: 61  SVLEAWRRNKRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQVELNCGPVALNTRTKRVTVNGNPIKLTSHEYNLLDYLMHHTGRVVSRTELVEHLYD 180
           GHAQ EL CGPV L+TRT RV+VNGNPIK+TSHEY LL YLMHH+GRVVSRTELVEHLYD
Sbjct: 121 GHAQSELTCGPVMLDTRTNRVSVNGNPIKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 QDFDRDSNTIEVFVGRIRKKLEVDIIQTVRGLGYMLSPP 219
           QDFDRDSNTIEVFVGRIRKKL+VDIIQTVRGLGY+L+PP
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLTPP 219


>ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gb|ABE62255.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 223

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/220 (91%), Positives = 213/220 (96%)

Query: 1   VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60
           +RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  SVLEAWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRAT 120
           SVLEAWRRN R MPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEE+LARIRALLRR+T
Sbjct: 61  SVLEAWRRNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRST 120

Query: 121 GHAQVELNCGPVALNTRTKRVTVNGNPIKLTSHEYNLLDYLMHHTGRVVSRTELVEHLYD 180
           GHAQ EL+CGPV L+TRT RV+V+GNP+K+TSHEY LL YLMHHTGRVVSRTELVEHLYD
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 181 QDFDRDSNTIEVFVGRIRKKLEVDIIQTVRGLGYMLSPPT 220
           QDFDRDSNTIEVFVGRIRKKL+VDIIQTVRGLGY+L+PPT
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLTPPT 220


>ref|ZP_07026739.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gb|EFI51582.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 229

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/220 (91%), Positives = 212/220 (96%)

Query: 1   VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60
           +RLLVVEDDPDLNRQLT AL+DAGYVVDRAFDGEEGHFLGD+EPYDAVVLDIGLPKMDGI
Sbjct: 6   LRLLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGI 65

Query: 61  SVLEAWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRAT 120
           SVLE+WRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR+T
Sbjct: 66  SVLESWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 125

Query: 121 GHAQVELNCGPVALNTRTKRVTVNGNPIKLTSHEYNLLDYLMHHTGRVVSRTELVEHLYD 180
           GHAQ EL CGPV L+TRT RVTV+GNPIK+TSHEY LL YLMHH GRVVSRTELVEHLYD
Sbjct: 126 GHAQSELTCGPVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 185

Query: 181 QDFDRDSNTIEVFVGRIRKKLEVDIIQTVRGLGYMLSPPT 220
           QDFDRDSNTIEVFVGRIRKKL+VDIIQTVRGLGY+L+PPT
Sbjct: 186 QDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLAPPT 225


>ref|YP_004109889.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gb|ADU45156.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/220 (90%), Positives = 209/220 (95%)

Query: 1   VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60
           +RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGD+EPYDAVVLDIGLPKMDGI
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  SVLEAWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRAT 120
           SVLEAWRRN R MPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR+ 
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQVELNCGPVALNTRTKRVTVNGNPIKLTSHEYNLLDYLMHHTGRVVSRTELVEHLYD 180
           GHAQ EL+CGPV L+TRT RV+ NGNP+KLTSHEY LL YLMHH+GRVVSRTELVEHLYD
Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 QDFDRDSNTIEVFVGRIRKKLEVDIIQTVRGLGYMLSPPT 220
           QDFDRDSNTIEVFVGRIRKKL VDIIQTVRGLGY+LSPP 
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLGVDIIQTVRGLGYLLSPPA 220


>ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas
           palustris CGA009]
 ref|YP_001991123.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris TIE-1]
 emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gb|ACF00648.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 224

 Score =  414 bits (1063), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/220 (90%), Positives = 209/220 (95%)

Query: 1   VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60
           +RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGD+EPYDAVVLDIGLPKMDGI
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  SVLEAWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRAT 120
           SVLEAWRRN R MPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR+ 
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQVELNCGPVALNTRTKRVTVNGNPIKLTSHEYNLLDYLMHHTGRVVSRTELVEHLYD 180
           GHAQ EL CGPV L+TRT RV+V+GNP+KLTSHEY LL YLMHH+GRVVSRTELVEHLYD
Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 QDFDRDSNTIEVFVGRIRKKLEVDIIQTVRGLGYMLSPPT 220
           QDFDRDSNTIEVFVGRIRKKL VDIIQTVRGLGY+LSPP 
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLGVDIIQTVRGLGYLLSPPA 220