BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0002.p (464 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769763.1| hypothetical protein blr3123 [Bradyrhizobium ja... 675 0.0 ref|YP_001239094.1| hypothetical protein BBta_3069 [Bradyrhizobi... 639 0.0 ref|YP_001204780.1| hypothetical protein BRADO2730 [Bradyrhizobi... 637 e-180 ref|ZP_01046348.1| hypothetical protein NB311A_12599 [Nitrobacte... 632 e-179 ref|YP_317804.1| hypothetical protein Nwi_1190 [Nitrobacter wino... 617 e-174 >ref|NP_769763.1| hypothetical protein blr3123 [Bradyrhizobium japonicum USDA 110] dbj|BAC48388.1| blr3123 [Bradyrhizobium japonicum USDA 110] Length = 486 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/466 (72%), Positives = 383/466 (82%), Gaps = 3/466 (0%) Query: 1 MSQKSTERLRDYLAQLPPQSQALLMRELERAVERGEDITVANLVLEQLRKIVRGAEEDEQ 60 MSQ S ERLR+YLAQLPPQSQALLMRE ERA+ERG+D+ VA LVLEQLR+IVR E DE Sbjct: 20 MSQTSIERLREYLAQLPPQSQALLMREFERALERGQDMAVATLVLEQLRRIVRKTEADET 79 Query: 61 IQPRSDDPARLLFRPLEPFLAETNFPTRAGQIRRASLLPIWQWLAREGAPEAARAFEAAL 120 PR+DD +RLLF+ LEPFL E P R GQIRR+SL PIWQWL R+GAP+ FEAAL Sbjct: 80 PPPRTDDLSRLLFQVLEPFLVEAGAPIRVGQIRRSSLHPIWQWLGRDGAPDKLNEFEAAL 139 Query: 121 A---AATESGPMETAARKFQLAAADAILKIAAPSQDDRQRALSRVGPPNVVEDLLPIGLV 177 A AA +G +E A+K Q AADAI ++ P D+ RAL+RVGPPNV+EDL +G V Sbjct: 140 ARMPAADSAGQVEALAQKLQAVAADAIFQLTGPGGGDKSRALARVGPPNVIEDLYSVGAV 199 Query: 178 LQAREALETLGSRLPSQIRVFADSQIASATEALKLPSLQTPQLLPFALSLIAQRLAAPWQ 237 LQ REA+ TL +LP +R F DSQIAS T AL +P LQTPQ+LPFALS++ QR+ APWQ Sbjct: 200 LQVREAIATLNEKLPRFLRAFGDSQIASVTSALNIPVLQTPQMLPFALSIVVQRMTAPWQ 259 Query: 238 IVRLAIKMAASDDELRVAATPYGVAVTIALHDLSFVAACLRTDIRRGHFDYVGEQLKTLH 297 I+RLAIK+AASDDE+RVAATPYGVAVTIALHDLS VAA LR DI+RG FD V + LK LH Sbjct: 260 IIRLAIKIAASDDEIRVAATPYGVAVTIALHDLSCVAAILRMDIKRGQFDNVADNLKALH 319 Query: 298 DGVRGLRTELDLRNDSTWGRQLTSVRADTSNALQSEIDSVPGRVRRILRQRADKDIAAGA 357 DGVRGLRTELDLRNDS WG+QLTS+RAD SNALQSEIDSVPGRVRRILRQR +KDI GA Sbjct: 320 DGVRGLRTELDLRNDSAWGKQLTSIRADISNALQSEIDSVPGRVRRILRQRPEKDIPPGA 379 Query: 358 KIDATEVEDAAALIDFVAVCRTYASELAINEVTLRTFSDLQHYVEQSTEGLVQSLRGGDA 417 +ID+TEVE+ AALIDFVA CR YASELAINEVTLRT+SDLQ YVE+STE LVQSLR D Sbjct: 380 RIDSTEVEETAALIDFVATCRNYASELAINEVTLRTYSDLQQYVERSTEQLVQSLRAADL 439 Query: 418 RVRAFRQQQVKAAIRFCEVLFGHDYASLMNRAAENAVTGERKSSRA 463 +VR +RQQQV+AAIRFC+VLFG DYASLM+RAAENA+TGERKSSRA Sbjct: 440 KVRTYRQQQVQAAIRFCQVLFGDDYASLMSRAAENALTGERKSSRA 485 >ref|YP_001239094.1| hypothetical protein BBta_3069 [Bradyrhizobium sp. BTAi1] gb|ABQ35188.1| hypothetical protein BBta_3069 [Bradyrhizobium sp. BTAi1] Length = 489 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/492 (66%), Positives = 386/492 (78%), Gaps = 31/492 (6%) Query: 1 MSQKSTERLRDYLAQLPPQSQALLMRELERAVERGEDITVANLVLEQLRKIVRG------ 54 M Q + ERLR+YL QLPP +Q+LLMRE ERA+ERG+D+ VA LVLEQLRK+VR Sbjct: 1 MGQTAHERLREYLGQLPPNAQSLLMREFERAIERGQDVAVATLVLEQLRKVVRPAPPAAP 60 Query: 55 --------------------AEEDEQIQPRSDDPARLLFRPLEPFLAETNFPTRAGQIRR 94 A ED + +S D R LFRPLEPFL +++ P R GQIRR Sbjct: 61 PTPVAEPVRPQPAIEVSRPPAREDRR---QSGDGPRRLFRPLEPFLTDSSGPLRPGQIRR 117 Query: 95 ASLLPIWQWLAREGAPEAARAFEAALAAATE-SGPMETAARKFQLAAADAILKIAAPS-Q 152 ASLL +WQWL REGAPE FEAAL+ A + S +E AARK QLA A+A++K+ P+ Sbjct: 118 ASLLAVWQWLGREGAPERYAEFEAALSTAGDGSREVEMAARKLQLATAEALMKLVGPNAT 177 Query: 153 DDRQRALSRVGPPNVVEDLLPIGLVLQAREALETLGSRLPSQIRVFADSQIASATEALKL 212 DRQRAL+R+G P+V+EDLLPI LVLQ REAL+ L RLP IRV DSQIAS T+A+ + Sbjct: 178 GDRQRALARIGAPSVIEDLLPIALVLQNREALDGLNGRLPGIIRVLGDSQIASVTDAINV 237 Query: 213 PSLQTPQLLPFALSLIAQRLAAPWQIVRLAIKMAASDDELRVAATPYGVAVTIALHDLSF 272 PSLQTP +LPFAL+L+ QRLAAPWQI+RLA K+AASDDE+RVAATP+GVAVTIAL+DL+ Sbjct: 238 PSLQTPLMLPFALALVMQRLAAPWQIIRLATKIAASDDEIRVAATPFGVAVTIALNDLAN 297 Query: 273 VAACLRTDIRRGHFDYVGEQLKTLHDGVRGLRTELDLRNDSTWGRQLTSVRADTSNALQS 332 +A LR DIRRGHF +G+ LKTLHDGVRGLRTELDLR++S WG+QLT++RAD SNALQS Sbjct: 298 LATVLRADIRRGHFANLGDTLKTLHDGVRGLRTELDLRSESNWGKQLTAIRADISNALQS 357 Query: 333 EIDSVPGRVRRILRQRADKDIAAGAKIDATEVEDAAALIDFVAVCRTYASELAINEVTLR 392 EIDSVPGR RRILRQRADKDI AGA +D +EVE+ AALI+FVAVCR YASELAINEVTLR Sbjct: 358 EIDSVPGRARRILRQRADKDIPAGAGVDTSEVEEVAALIEFVAVCRNYASELAINEVTLR 417 Query: 393 TFSDLQHYVEQSTEGLVQSLRGGDARVRAFRQQQVKAAIRFCEVLFGHDYASLMNRAAEN 452 T+SDLQ YVE++TE LVQSLR GDAR RA+RQ QV AAIRFC VLFG+DYA LM+RAAEN Sbjct: 418 TYSDLQQYVEKATEALVQSLRSGDARARAYRQSQVSAAIRFCHVLFGNDYAQLMSRAAEN 477 Query: 453 AVTGERKSSRAG 464 A+ GERKSSRAG Sbjct: 478 ALNGERKSSRAG 489 >ref|YP_001204780.1| hypothetical protein BRADO2730 [Bradyrhizobium sp. ORS 278] emb|CAL76543.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 495 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 324/497 (65%), Positives = 384/497 (77%), Gaps = 35/497 (7%) Query: 1 MSQKSTERLRDYLAQLPPQSQALLMRELERAVERGEDITVANLVLEQLRK---------- 50 M Q + ERLR+YL QLPP +Q+LLMRE ERA+ERG+D+ VA +VLEQLRK Sbjct: 1 MGQTAHERLREYLGQLPPSAQSLLMREFERAIERGQDVAVATMVLEQLRKVARPAAPAAA 60 Query: 51 ---------------------IVRGAEEDEQIQPRSDDPARLLFRPLEPFLAETNFPTRA 89 + R +E+ Q D R LFRPLEPFL ++ P R Sbjct: 61 AAPTAPQVPAAEPARAAPAIEVARSPAREERRQ--GGDGPRRLFRPLEPFLTDSTGPLRP 118 Query: 90 GQIRRASLLPIWQWLAREGAPEAARAFEAALAAATESG-PMETAARKFQLAAADAILKIA 148 GQIRRASLL +WQWL REGAPE FEAA+AA ++S +E AARK QLAAADA++K+ Sbjct: 119 GQIRRASLLAVWQWLGREGAPERYTEFEAAMAAGSDSSREVEMAARKLQLAAADALMKLV 178 Query: 149 APS-QDDRQRALSRVGPPNVVEDLLPIGLVLQAREALETLGSRLPSQIRVFADSQIASAT 207 P+ DRQRAL+R+G P+V+EDLLPI LVLQ REAL+ L RLP IRV DSQIAS T Sbjct: 179 GPNATGDRQRALARIGAPSVIEDLLPIALVLQNREALDGLNGRLPGIIRVLGDSQIASVT 238 Query: 208 EALKLPSLQTPQLLPFALSLIAQRLAAPWQIVRLAIKMAASDDELRVAATPYGVAVTIAL 267 +A+ +PSLQTP +LPFALS++ QRLAAPWQI+RLA K+AASDDE+RVAATP+GVAVTIAL Sbjct: 239 DAINVPSLQTPLMLPFALSMVMQRLAAPWQIIRLATKIAASDDEIRVAATPFGVAVTIAL 298 Query: 268 HDLSFVAACLRTDIRRGHFDYVGEQLKTLHDGVRGLRTELDLRNDSTWGRQLTSVRADTS 327 +DL+ +A+ LR DIRRGHF +G+ LKTLHDGVRGLRTELDLR++S WG+QLT++RAD S Sbjct: 299 NDLANLASLLRADIRRGHFSNLGDTLKTLHDGVRGLRTELDLRSESNWGKQLTAIRADIS 358 Query: 328 NALQSEIDSVPGRVRRILRQRADKDIAAGAKIDATEVEDAAALIDFVAVCRTYASELAIN 387 N+LQSEIDSVPGR RRILRQRADKDI AGA +D EVE+ AALI+FVAVCR YASELAIN Sbjct: 359 NSLQSEIDSVPGRARRILRQRADKDIPAGAGVDTAEVEEVAALIEFVAVCRNYASELAIN 418 Query: 388 EVTLRTFSDLQHYVEQSTEGLVQSLRGGDARVRAFRQQQVKAAIRFCEVLFGHDYASLMN 447 EVTLRT++DLQ YVE++TE LVQSLR GDAR RA+RQ QV AAIRFC VLFG+DYA LM+ Sbjct: 419 EVTLRTYTDLQQYVEKATEALVQSLRSGDARARAYRQSQVSAAIRFCHVLFGNDYAQLMS 478 Query: 448 RAAENAVTGERKSSRAG 464 RAAENA+ GERKSSRAG Sbjct: 479 RAAENAMNGERKSSRAG 495 >ref|ZP_01046348.1| hypothetical protein NB311A_12599 [Nitrobacter sp. Nb-311A] gb|EAQ35662.1| hypothetical protein NB311A_12599 [Nitrobacter sp. Nb-311A] Length = 463 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 324/466 (69%), Positives = 377/466 (80%), Gaps = 5/466 (1%) Query: 1 MSQKSTERLRDYLAQLPPQSQALLMRELERAVERGEDITVANLVLEQLRKIVRGAEEDEQ 60 M Q S ERL+DYLAQLPP+SQALLMRE +RA ERGED VANLVL +LR+IVR +++ EQ Sbjct: 1 MDQTSIERLKDYLAQLPPKSQALLMREFQRAAERGEDAAVANLVLGELRRIVRRSDDSEQ 60 Query: 61 IQPRSDDPARLLFRPLEPFLAETNFPTRAGQIRRASLLPIWQWLAREGAPEAARAFEAAL 120 RS+DPAR LFRPL+PFL E R GQIRR SL+P+WQWLAREGA +AARAFEA L Sbjct: 61 ---RSEDPARHLFRPLDPFLVEDGVALRPGQIRRTSLMPVWQWLAREGASDAARAFEAVL 117 Query: 121 AAATESGP-METAARKFQLAAADAILKIAAPSQD-DRQRALSRVGPPNVVEDLLPIGLVL 178 A T S +E AAR FQ AA AI +I D DRQRAL R+G P+VVEDL IG VL Sbjct: 118 ANQTGSASEIEAAARTFQPVAAAAIQRILTDRSDLDRQRALGRIGAPSVVEDLAAIGAVL 177 Query: 179 QAREALETLGSRLPSQIRVFADSQIASATEALKLPSLQTPQLLPFALSLIAQRLAAPWQI 238 AR+AL+TL RLPS +RVF +SQIA+ AL PSLQTP LPFALSL+ QRL+A WQI Sbjct: 178 NARDALDTLNIRLPSFLRVFGESQIATVMTALNAPSLQTPLALPFALSLVMQRLSASWQI 237 Query: 239 VRLAIKMAASDDELRVAATPYGVAVTIALHDLSFVAACLRTDIRRGHFDYVGEQLKTLHD 298 +RLAI++A SDDE+RVAATPYGVA+ +AL DLS ++A LR DIRRG F+ V + LKTLHD Sbjct: 238 IRLAIRVAGSDDEIRVAATPYGVAIKMALDDLSQISAVLRADIRRGRFENVSQHLKTLHD 297 Query: 299 GVRGLRTELDLRNDSTWGRQLTSVRADTSNALQSEIDSVPGRVRRILRQRADKDIAAGAK 358 GVRGLRTELD+R DS WGRQL ++R TS ALQSEI+SV GRVRR+LRQR DKDI +GA+ Sbjct: 298 GVRGLRTELDIRADSNWGRQLAAIRVVTSEALQSEIESVSGRVRRLLRQRPDKDIPSGAQ 357 Query: 359 IDATEVEDAAALIDFVAVCRTYASELAINEVTLRTFSDLQHYVEQSTEGLVQSLRGGDAR 418 +DA EVE+ AALIDFVAVCRTYASELAINEVT+RT+SDLQHYVE+ E LV+SLR GD R Sbjct: 358 LDAIEVEETAALIDFVAVCRTYASELAINEVTMRTYSDLQHYVERGAETLVESLRSGDER 417 Query: 419 VRAFRQQQVKAAIRFCEVLFGHDYASLMNRAAENAVTGERKSSRAG 464 VRAFRQQQVKAAIRFCEVLFG DY+S+M+RAA++A+T ERKSSRAG Sbjct: 418 VRAFRQQQVKAAIRFCEVLFGQDYSSMMSRAADHALTVERKSSRAG 463 >ref|YP_317804.1| hypothetical protein Nwi_1190 [Nitrobacter winogradskyi Nb-255] gb|ABA04452.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 463 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/466 (68%), Positives = 370/466 (79%), Gaps = 5/466 (1%) Query: 1 MSQKSTERLRDYLAQLPPQSQALLMRELERAVERGEDITVANLVLEQLRKIVRGAEEDEQ 60 M Q S ERL+DYLAQLPP+SQALLMRE ERAVERGED VANLVL +LR+I + + EQ Sbjct: 1 MDQTSIERLKDYLAQLPPKSQALLMREFERAVERGEDAAVANLVLGELRRIDPQSGDSEQ 60 Query: 61 IQPRSDDPARLLFRPLEPFLAETNFPTRAGQIRRASLLPIWQWLAREGAPEAARAFEAAL 120 RS+DP R LFRPL+PFL E N R+GQIRR SL+P+W+WLAREGAP+ ARAFEA L Sbjct: 61 ---RSEDPVRHLFRPLDPFLVEDNVVPRSGQIRRNSLVPVWRWLAREGAPDDARAFEAVL 117 Query: 121 AA-ATESGPMETAARKFQLAAADAILKIAAPSQD-DRQRALSRVGPPNVVEDLLPIGLVL 178 AA A + +ETAAR FQ AA AIL+I S +RQR L R+ P V+EDL I VL Sbjct: 118 AAEAGSASGIETAARVFQPVAAAAILRILTDSSGINRQRTLGRISAPGVIEDLPAIAAVL 177 Query: 179 QAREALETLGSRLPSQIRVFADSQIASATEALKLPSLQTPQLLPFALSLIAQRLAAPWQI 238 AREAL+TL RLP + VF + QIAS AL +PSLQTP LPFALSL+ QRL+APWQI Sbjct: 178 HAREALDTLNIRLPGFLPVFGEPQIASLMTALNVPSLQTPAALPFALSLVMQRLSAPWQI 237 Query: 239 VRLAIKMAASDDELRVAATPYGVAVTIALHDLSFVAACLRTDIRRGHFDYVGEQLKTLHD 298 +RLA+++A SDDE+RVAATPYGVAV +AL DLS +A LR DIRRG F+ V LKTLHD Sbjct: 238 IRLAVQVAGSDDEIRVAATPYGVAVKMALDDLSQTSAVLRADIRRGRFENVSRHLKTLHD 297 Query: 299 GVRGLRTELDLRNDSTWGRQLTSVRADTSNALQSEIDSVPGRVRRILRQRADKDIAAGAK 358 GVRGLRTELD+R DS WGRQL ++R D S LQSEI+ V GRVRRILRQR DKDI AGAK Sbjct: 298 GVRGLRTELDIRTDSGWGRQLAAIRVDISEVLQSEIEGVAGRVRRILRQRPDKDIPAGAK 357 Query: 359 IDATEVEDAAALIDFVAVCRTYASELAINEVTLRTFSDLQHYVEQSTEGLVQSLRGGDAR 418 +D+ EVE+ AALIDFVAVCRTYASELAINEVT RT+SDLQHYVE+++E LV++LR GD R Sbjct: 358 LDSIEVEETAALIDFVAVCRTYASELAINEVTTRTYSDLQHYVERTSETLVEALRNGDER 417 Query: 419 VRAFRQQQVKAAIRFCEVLFGHDYASLMNRAAENAVTGERKSSRAG 464 VRAFRQQQVKA IRFCEVLFG DY+SLM+RAA++A+T ERKSSRAG Sbjct: 418 VRAFRQQQVKAVIRFCEVLFGRDYSSLMSRAADHALTAERKSSRAG 463