BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0071.0006.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241414.1| hypothetical protein BBta_5549 [Bradyrhizobi... 229 1e-58 ref|NP_772522.1| hypothetical protein bll5882 [Bradyrhizobium ja... 229 2e-58 ref|YP_001206990.1| putative signal peptide [Bradyrhizobium sp. ... 224 5e-57 ref|YP_780414.1| hypothetical protein RPE_1484 [Rhodopseudomonas... 206 1e-51 ref|YP_531346.1| hypothetical protein RPC_1465 [Rhodopseudomonas... 184 4e-45 >ref|YP_001241414.1| hypothetical protein BBta_5549 [Bradyrhizobium sp. BTAi1] gb|ABQ37508.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 202 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/176 (62%), Positives = 136/176 (77%), Gaps = 7/176 (3%) Query: 3 MRNTLSRLRLILAIAT----AFALAAPLA---ASAADPSAAGLWQKVEDGKPEGWFLVIE 55 M N SRLRL +A A +A L A AA+PSAAGLWQKVE+G+P + LV++ Sbjct: 1 MLNAFSRLRLASGVAKLAIGALVVAGALLTRPALAAEPSAAGLWQKVENGQPVLYVLVVD 60 Query: 56 RNGLFEGMIAKMFSSPGDPPNPVCSKCTDDRKDMPWLGIPLIRDMKRNGLAYEGGNVLDP 115 NG+FEG++AK+F P DPPN VC KCTDDRK+ PWLG+ IRDMKR+GL YE GNVLDP Sbjct: 61 HNGVFEGVMAKLFPKPTDPPNRVCDKCTDDRKNAPWLGLSFIRDMKRDGLKYEDGNVLDP 120 Query: 116 RNGKVYKAKMTLSADGQTLTMRGFLGISLFGKDEVWTRLPDTAVAQLDPAIVAKYL 171 R+GK+Y AKMTLS DGQ+LT+RG++G SL G+DE W RLPDTA+AQ+DPA++AKYL Sbjct: 121 RDGKIYSAKMTLSPDGQSLTLRGYIGFSLLGRDETWVRLPDTAMAQIDPAVIAKYL 176 >ref|NP_772522.1| hypothetical protein bll5882 [Bradyrhizobium japonicum USDA 110] dbj|BAC51147.1| bll5882 [Bradyrhizobium japonicum USDA 110] Length = 207 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/178 (62%), Positives = 137/178 (76%), Gaps = 7/178 (3%) Query: 1 MMMRNTLSRLRLILAI-------ATAFALAAPLAASAADPSAAGLWQKVEDGKPEGWFLV 53 ++MRN RL+ + A + A A A++A P+AAGLWQKVEDGK GWFL Sbjct: 2 IIMRNPFPSFRLLSLLTLALSLGAVSPAAAQAPVATSAQPTAAGLWQKVEDGKTVGWFLF 61 Query: 54 IERNGLFEGMIAKMFSSPGDPPNPVCSKCTDDRKDMPWLGIPLIRDMKRNGLAYEGGNVL 113 ++ NG+FEG+IAK F PGD PN VC+KCTDDRK+ P LG+ IRDMKR+GL Y+GGNV+ Sbjct: 62 VDHNGVFEGVIAKTFPRPGDDPNEVCAKCTDDRKNAPVLGLSFIRDMKRDGLKYDGGNVV 121 Query: 114 DPRNGKVYKAKMTLSADGQTLTMRGFLGISLFGKDEVWTRLPDTAVAQLDPAIVAKYL 171 +PR+G ++KAKMT+S DGQTLTMRGFLGISLFGKDE WTRLPD +AQ+DPAIVAKYL Sbjct: 122 NPRDGNIWKAKMTVSPDGQTLTMRGFLGISLFGKDETWTRLPDANIAQVDPAIVAKYL 179 >ref|YP_001206990.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL78773.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 208 Score = 224 bits (571), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 111/181 (61%), Positives = 134/181 (74%), Gaps = 10/181 (5%) Query: 1 MMMRNTLSRLRLILAIATAFALAAPLA----------ASAADPSAAGLWQKVEDGKPEGW 50 MMMRN RLRL+ A T A A AA+P+AAGLWQKVEDG+P GW Sbjct: 1 MMMRNAFPRLRLVPAATTLALGALGALVAAGALPTRPALAAEPTAAGLWQKVEDGRPVGW 60 Query: 51 FLVIERNGLFEGMIAKMFSSPGDPPNPVCSKCTDDRKDMPWLGIPLIRDMKRNGLAYEGG 110 FL I+ +G+FEG+IAK F PGD PN VCSKCTDDRK+ P +GI +RDMKR GL YEGG Sbjct: 61 FLFIDHDGVFEGVIAKTFPRPGDNPNEVCSKCTDDRKNAPIVGISFVRDMKREGLKYEGG 120 Query: 111 NVLDPRNGKVYKAKMTLSADGQTLTMRGFLGISLFGKDEVWTRLPDTAVAQLDPAIVAKY 170 NVL+PR+G ++KA M ++ DGQ+L + G+LGISLFGKDE WTRLPDT +AQ+DPAI+AKY Sbjct: 121 NVLNPRDGNIWKANMRVTPDGQSLILHGYLGISLFGKDETWTRLPDTNMAQIDPAILAKY 180 Query: 171 L 171 L Sbjct: 181 L 181 >ref|YP_780414.1| hypothetical protein RPE_1484 [Rhodopseudomonas palustris BisA53] gb|ABJ05434.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 226 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 105/197 (53%), Positives = 131/197 (66%), Gaps = 8/197 (4%) Query: 2 MMRNTLSRLRLILAIATAFALAAPLAASAADPSAAGLWQKVEDGKPEGWFLVIER-NGLF 60 M N + R + A + L AAD +AAGLWQ+ ++G+P W L+++R NGLF Sbjct: 1 MAGNQIQRRLAMAVAAAMLLAGSVLQGQAADVTAAGLWQRSDNGRPVVWVLMLDRGNGLF 60 Query: 61 EGMIAKMFSSPGDPPNPVCSKCTDDRKDMPWLGIPLIRDMKRNGLAYEGGNVLDPRNGKV 120 EG++AK F PG PN VC +C DDRKD P LGI LIRDMKR GL Y GGN+LDPRNG + Sbjct: 61 EGVVAKTFPQPGTDPNAVCDECEDDRKDQPVLGISLIRDMKRKGLEYLGGNILDPRNGDI 120 Query: 121 YKAKMTLSADGQTLTMRGFLGISLFGKDEVWTRLPDTAVAQLDPAIVAKYLPAQGAV--- 177 +KA++ +S DGQ LT+RG+L + GKDE W +LPDTA AQLDPAI AK+LPAQ A Sbjct: 121 WKAQLKVSPDGQVLTLRGYLMTPMLGKDEDWQKLPDTAYAQLDPAITAKFLPAQAAALTP 180 Query: 178 ----AKPAAPVPATKRH 190 KPAAP P T + Sbjct: 181 GAAPGKPAAPTPTTAQS 197 >ref|YP_531346.1| hypothetical protein RPC_1465 [Rhodopseudomonas palustris BisB18] gb|ABD87027.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 214 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 86/136 (63%), Positives = 107/136 (78%), Gaps = 1/136 (0%) Query: 37 GLWQKVEDGKPEGWFLVIER-NGLFEGMIAKMFSSPGDPPNPVCSKCTDDRKDMPWLGIP 95 GLWQ+ EDGKP W L+++R NG++EG++AK F PG PN VC +C DDRK+ P LGI Sbjct: 37 GLWQRSEDGKPVVWLLMLDRGNGMYEGVVAKTFPKPGVDPNAVCDECEDDRKNAPVLGIS 96 Query: 96 LIRDMKRNGLAYEGGNVLDPRNGKVYKAKMTLSADGQTLTMRGFLGISLFGKDEVWTRLP 155 LIRDMKR GL Y GGN+LDPRNG ++KA++ +S DGQ LT+RG+L + GKDE W RLP Sbjct: 97 LIRDMKRKGLEYLGGNILDPRNGDIWKAQLKVSPDGQALTLRGYLMTPMLGKDETWQRLP 156 Query: 156 DTAVAQLDPAIVAKYL 171 DTA+AQLDPAIVAK+L Sbjct: 157 DTALAQLDPAIVAKFL 172