BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0071.0003.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772525.1| ferrodoxin [Bradyrhizobium japonicum USDA 110] ...   208   3e-52
ref|YP_487447.1| ferredoxin [Rhodopseudomonas palustris HaA2] >g...   206   9e-52
ref|YP_568781.1| ferredoxin [Rhodopseudomonas palustris BisB5] >...   204   3e-51
ref|YP_001206993.1| 2Fe-2S ferredoxin [Bradyrhizobium sp. ORS 27...   203   7e-51
ref|YP_004107752.1| ferredoxin [Rhodopseudomonas palustris DX-1]...   202   1e-50

>ref|NP_772525.1| ferrodoxin [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51150.1| ferrodoxin [Bradyrhizobium japonicum USDA 110]
          Length = 106

 Score =  208 bits (529), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/106 (90%), Positives = 103/106 (97%)

Query: 1   MAKIHFIDHSGEKRTVDIENGATVMEGAIRNAIPGIEAECGGACACATCHVYVDEAWREK 60
           MAKIHF+DH GE RTV+IENGATVME AIRN+IPGIEAECGGACACATCHVYVDEAWREK
Sbjct: 1   MAKIHFVDHKGETRTVEIENGATVMEAAIRNSIPGIEAECGGACACATCHVYVDEAWREK 60

Query: 61  VGAPSPMEEDMLDFGFDVRPNSRLSCQIKVTDDLDGLVVSTPERQA 106
           VG+P+PMEEDMLDFGFDVRPNSRLSCQIKV+D+LDGLVVSTPERQA
Sbjct: 61  VGSPTPMEEDMLDFGFDVRPNSRLSCQIKVSDELDGLVVSTPERQA 106


>ref|YP_487447.1| ferredoxin [Rhodopseudomonas palustris HaA2]
 gb|ABD08536.1| Ferredoxin [Rhodopseudomonas palustris HaA2]
          Length = 106

 Score =  206 bits (524), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 102/106 (96%)

Query: 1   MAKIHFIDHSGEKRTVDIENGATVMEGAIRNAIPGIEAECGGACACATCHVYVDEAWREK 60
           MAKIHF+DHSGE R VD+ENGATVME AIRNAIPGIEAECGGACACATCHVYVDEAWREK
Sbjct: 1   MAKIHFVDHSGETRIVDVENGATVMEAAIRNAIPGIEAECGGACACATCHVYVDEAWREK 60

Query: 61  VGAPSPMEEDMLDFGFDVRPNSRLSCQIKVTDDLDGLVVSTPERQA 106
           VG PSPMEEDMLDFG+DVRPNSRLSCQIKV+D+LDGLV+STP+RQA
Sbjct: 61  VGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSDELDGLVISTPDRQA 106


>ref|YP_568781.1| ferredoxin [Rhodopseudomonas palustris BisB5]
 gb|ABE38880.1| ferredoxin [Rhodopseudomonas palustris BisB5]
          Length = 106

 Score =  204 bits (519), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 102/106 (96%)

Query: 1   MAKIHFIDHSGEKRTVDIENGATVMEGAIRNAIPGIEAECGGACACATCHVYVDEAWREK 60
           MAKIHF+DHSGE R VD+ENGATVME AIRNAIPGIEAECGGACACATCHVYVDEAWREK
Sbjct: 1   MAKIHFVDHSGETRIVDVENGATVMEAAIRNAIPGIEAECGGACACATCHVYVDEAWREK 60

Query: 61  VGAPSPMEEDMLDFGFDVRPNSRLSCQIKVTDDLDGLVVSTPERQA 106
           VG PSPMEEDMLDFG+DVRP+SRLSCQIKV+D+LDGLV+STP+RQA
Sbjct: 61  VGGPSPMEEDMLDFGYDVRPSSRLSCQIKVSDELDGLVISTPDRQA 106


>ref|YP_001206993.1| 2Fe-2S ferredoxin [Bradyrhizobium sp. ORS 278]
 emb|CAL78776.1| 2Fe-2S ferredoxin (FdII) [Bradyrhizobium sp. ORS 278]
          Length = 106

 Score =  203 bits (517), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 102/106 (96%)

Query: 1   MAKIHFIDHSGEKRTVDIENGATVMEGAIRNAIPGIEAECGGACACATCHVYVDEAWREK 60
           MAKI F+DH+GE RTVDIENGATVME AIRNAIPGIEAECGGACACATCHVYVDEAWREK
Sbjct: 1   MAKITFVDHTGESRTVDIENGATVMEAAIRNAIPGIEAECGGACACATCHVYVDEAWREK 60

Query: 61  VGAPSPMEEDMLDFGFDVRPNSRLSCQIKVTDDLDGLVVSTPERQA 106
           VG P+PMEEDMLDFG+DVRPNSRL+CQIKV+D+LDGLVV+TPERQA
Sbjct: 61  VGPPTPMEEDMLDFGYDVRPNSRLACQIKVSDELDGLVVATPERQA 106


>ref|YP_004107752.1| ferredoxin [Rhodopseudomonas palustris DX-1]
 gb|ADU43019.1| ferredoxin [Rhodopseudomonas palustris DX-1]
          Length = 106

 Score =  202 bits (514), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/106 (85%), Positives = 102/106 (96%)

Query: 1   MAKIHFIDHSGEKRTVDIENGATVMEGAIRNAIPGIEAECGGACACATCHVYVDEAWREK 60
           MAKIHF+DH+GE RTV++E GATVME AIRNAIPG+EAECGGACACATCHVYVDEAWREK
Sbjct: 1   MAKIHFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREK 60

Query: 61  VGAPSPMEEDMLDFGFDVRPNSRLSCQIKVTDDLDGLVVSTPERQA 106
           VG PSPMEEDMLDFG+DVRPNSRLSCQIKV+++LDGL+V+TPERQA
Sbjct: 61  VGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSNELDGLIVTTPERQA 106