BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0070.0032.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208546.1| putative permease membrane protein [Bradyrhi... 254 4e-66 ref|YP_001236975.1| putative permease [Bradyrhizobium sp. BTAi1]... 253 1e-65 ref|YP_316804.1| hypothetical protein Nwi_0184 [Nitrobacter wino... 251 5e-65 ref|YP_530631.1| hypothetical protein RPC_0741 [Rhodopseudomonas... 243 1e-62 ref|YP_779653.1| hypothetical protein RPE_0716 [Rhodopseudomonas... 238 3e-61 >ref|YP_001208546.1| putative permease membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL80331.1| putative permease; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 331 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 137/165 (83%), Positives = 155/165 (93%) Query: 42 ARGGRPVTLRKPGSHGWIHGLPLKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGIGGGFI 101 ARGG T+R+PGSH W+HGLPLK+RFKRSKIY+SVIPV+ +GL IGF+GAVMGIGGGFI Sbjct: 163 ARGGAVATVRRPGSHVWVHGLPLKMRFKRSKIYVSVIPVIGIGLLIGFLGAVMGIGGGFI 222 Query: 102 LVPLMIYVLRVPTSTVIGTSMVLTLVTMVFATMLHAVTNHLVDAVLALILMVGGVTGAQF 161 LVPL+IY+LRVPTSTVIGTSMVLTL TM+ ATMLHA++NHLVDAVLALILM+GGVTGAQF Sbjct: 223 LVPLLIYLLRVPTSTVIGTSMVLTLATMMIATMLHAMSNHLVDAVLALILMIGGVTGAQF 282 Query: 162 GARAGQKIRGEHLRLLLGLLVLAVGIRFAVELVIRPQDLFSIRET 206 GARAGQ IRGE LRLLLGLL+LAVGIRFA+ELVIRP+DLF+IRET Sbjct: 283 GARAGQMIRGEQLRLLLGLLILAVGIRFAIELVIRPEDLFTIRET 327 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 9/103 (8%) Query: 67 RFKRSKIYLSV--IPV-----VVVGLAIGFIGAVMGIGGGFILVPLMIYVLRVPTSTVIG 119 R R +IYL + +PV + +G A+GF+ + GIGGGF++ PL+I+V P V Sbjct: 20 RATRMQIYLPIADLPVNIFLLLAMGAAVGFVSGMFGIGGGFLMTPLLIFVGITPAVAVAS 79 Query: 120 TSMVLTLVTMVFATMLHAVTNHLVDAVLALILMVGGVTGAQFG 162 S + + F+ L +D LA +LM+GG G G Sbjct: 80 VSSHIAASS--FSGALSYWRRRAIDPALASVLMIGGALGTALG 120 >ref|YP_001236975.1| putative permease [Bradyrhizobium sp. BTAi1] gb|ABQ33069.1| putative permease [Bradyrhizobium sp. BTAi1] Length = 308 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/170 (82%), Positives = 157/170 (92%), Gaps = 1/170 (0%) Query: 37 ARVRSARGGRPVTLRKPGSHGWIHGLPLKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGI 96 A +R+ +G P T+R+PGSH WIHGLPLK+RFKRSKIY+SVIPV+ +GL IGF+GAVMGI Sbjct: 136 AIMRARQGALP-TVRRPGSHVWIHGLPLKMRFKRSKIYVSVIPVIGIGLLIGFLGAVMGI 194 Query: 97 GGGFILVPLMIYVLRVPTSTVIGTSMVLTLVTMVFATMLHAVTNHLVDAVLALILMVGGV 156 GGGFILVPL+IY+LRVPTSTVIGTSMVLTL TM+ ATMLHAV+NHLVDAVLALILMVGGV Sbjct: 195 GGGFILVPLLIYILRVPTSTVIGTSMVLTLATMMIATMLHAVSNHLVDAVLALILMVGGV 254 Query: 157 TGAQFGARAGQKIRGEHLRLLLGLLVLAVGIRFAVELVIRPQDLFSIRET 206 TGAQFGARAGQ IRGE LRLLLGLL+LAVGIRFAVELVIRP DLF+IRET Sbjct: 255 TGAQFGARAGQMIRGEQLRLLLGLLILAVGIRFAVELVIRPADLFTIRET 304 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Query: 64 LKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGIGGGFILVPLMIYVLRVPTSTVIGTSMV 123 +++ + I +++ ++ +G A+GF+ + GIGGGF++ PL+I+V P V S Sbjct: 1 MQIYLPIADIPVNIFLLLAMGAAVGFVSGMFGIGGGFLMTPLLIFVGITPAVAVASVSSH 60 Query: 124 LTLVTMVFATMLHAVTNHLVDAVLALILMVGGVTGAQFGARAGQKIR 170 + + F+ L +D LAL+LM+GG G G +R Sbjct: 61 IAASS--FSGALSYWRRRAIDPSLALVLMIGGTLGTALGVSTFTLLR 105 >ref|YP_316804.1| hypothetical protein Nwi_0184 [Nitrobacter winogradskyi Nb-255] gb|ABA03452.1| Protein of unknown function DUF81 [Nitrobacter winogradskyi Nb-255] Length = 343 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 134/167 (80%), Positives = 152/167 (91%) Query: 42 ARGGRPVTLRKPGSHGWIHGLPLKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGIGGGFI 101 AR R V LR+ G HGW+HGLPLK+RFKRSKIYLS IPV+ +GL IGFIGAVMGIGGGFI Sbjct: 175 ARQNRTVPLRRSGGHGWVHGLPLKIRFKRSKIYLSAIPVIAIGLLIGFIGAVMGIGGGFI 234 Query: 102 LVPLMIYVLRVPTSTVIGTSMVLTLVTMVFATMLHAVTNHLVDAVLALILMVGGVTGAQF 161 LVPL+IY+LRVPTSTVIGTSM+LTL+TM FAT+LHA TNHLVDAVLALILM GGVTGAQF Sbjct: 235 LVPLLIYLLRVPTSTVIGTSMMLTLITMTFATVLHAATNHLVDAVLALILMTGGVTGAQF 294 Query: 162 GARAGQKIRGEHLRLLLGLLVLAVGIRFAVELVIRPQDLFSIRETGG 208 GARAGQ+IRGEHLRLLLG+L+LAVGIRFA+EL +RP DL+++RET G Sbjct: 295 GARAGQRIRGEHLRLLLGMLILAVGIRFAIELGLRPADLYTVRETTG 341 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Query: 64 LKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGIGGGFILVPLMIYVLRVPTSTVIGTSMV 123 ++L + I ++V+ ++ +G A+GF+ + GIGGGF++ PL+I+V P V ++ Sbjct: 36 VQLYLPIADIPVNVLLILAMGAAVGFVSGMFGIGGGFLMTPLLIFVGIAPAVAV--ATVT 93 Query: 124 LTLVTMVFATMLHAVTNHLVDAVLALILMVGGVTGAQFGARAGQKIRG-EHLRLLLGL-- 180 + F+ L VD +LAL+L+ GGV G G ++R L LL+ L Sbjct: 94 SHIAASSFSGALSYWRKRAVDPMLALVLLSGGVIGTILGVLTFTRLRSLGQLDLLIALSY 153 Query: 181 LVLAVGIRFAVE 192 LVL G+ A+ Sbjct: 154 LVLLSGVGAAMS 165 >ref|YP_530631.1| hypothetical protein RPC_0741 [Rhodopseudomonas palustris BisB18] gb|ABD86312.1| protein of unknown function DUF81 [Rhodopseudomonas palustris BisB18] Length = 308 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 133/167 (79%), Positives = 153/167 (91%) Query: 43 RGGRPVTLRKPGSHGWIHGLPLKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGIGGGFIL 102 R G V ++ G+ WIH LPLK+RFKRSK+YLSVIPVVV+GL IGFIGAVMG+GGGFIL Sbjct: 141 RRGDIVQPKRSGNRNWIHALPLKMRFKRSKMYLSVIPVVVIGLVIGFIGAVMGVGGGFIL 200 Query: 103 VPLMIYVLRVPTSTVIGTSMVLTLVTMVFATMLHAVTNHLVDAVLALILMVGGVTGAQFG 162 VP++IY+LRVPTSTVIGTSMVLTL TM+ AT+LHAVTNHLVDAVLALILM+GGVTGAQFG Sbjct: 201 VPILIYLLRVPTSTVIGTSMVLTLFTMLIATVLHAVTNHLVDAVLALILMIGGVTGAQFG 260 Query: 163 ARAGQKIRGEHLRLLLGLLVLAVGIRFAVELVIRPQDLFSIRETGGA 209 ARAGQ+IRGE LRLLLGLL+LAVG+RFA+EL I+PQDLF+IRETGG+ Sbjct: 261 ARAGQRIRGEQLRLLLGLLILAVGVRFAIELGIQPQDLFTIRETGGS 307 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 64 LKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGIGGGFILVPLMIYVLRVPTSTVIGTSMV 123 ++L + I ++V+ ++ +G A+GF+ + GIGGGF++ PL+I++ P V S+ Sbjct: 1 MQLYLPIADIPVNVLLILAMGAAVGFVSGMFGIGGGFLMTPLLIFIGIAPAVAV--ASVT 58 Query: 124 LTLVTMVFATMLHAVTNHLVDAVLALILMVGGVTGAQFG 162 + + L +D LAL+L+ GG+ G G Sbjct: 59 SHMAASSLSGALSYWRRRAIDPALALVLLCGGLIGTALG 97 >ref|YP_779653.1| hypothetical protein RPE_0716 [Rhodopseudomonas palustris BisA53] gb|ABJ04673.1| protein of unknown function DUF81 [Rhodopseudomonas palustris BisA53] Length = 308 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 134/171 (78%), Positives = 155/171 (90%), Gaps = 1/171 (0%) Query: 37 ARVRSARGGRPVTLRKPGSHGWIHGLPLKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGI 96 A +R+ RG P+ +++ G+ WIH LPLK+RFKRSKIYLSVIPVV+VGL IGFIGAVMG+ Sbjct: 136 AILRTRRGETPL-VKRSGNRNWIHALPLKIRFKRSKIYLSVIPVVLVGLLIGFIGAVMGV 194 Query: 97 GGGFILVPLMIYVLRVPTSTVIGTSMVLTLVTMVFATMLHAVTNHLVDAVLALILMVGGV 156 GGGFILVP++IY+LRVPTST IGTSMVLTLVTM+ AT+LHAVTNHLVDAVLAL+LM+GGV Sbjct: 195 GGGFILVPILIYLLRVPTSTGIGTSMVLTLVTMLIATVLHAVTNHLVDAVLALMLMIGGV 254 Query: 157 TGAQFGARAGQKIRGEHLRLLLGLLVLAVGIRFAVELVIRPQDLFSIRETG 207 TGAQFGARAGQKIRGE LRLLLGLL+LAVG+RFA+EL IRP DLF+IRE G Sbjct: 255 TGAQFGARAGQKIRGEQLRLLLGLLILAVGVRFAIELGIRPADLFTIREIG 305 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 2/99 (2%) Query: 64 LKLRFKRSKIYLSVIPVVVVGLAIGFIGAVMGIGGGFILVPLMIYVLRVPTSTVIGTSMV 123 ++L + + ++V+ ++ +G A+GF+ + GIGGGF++ PL+I++ P V S+ Sbjct: 1 MQLYLPIADLPVNVLLILAMGAAVGFVSGMFGIGGGFLMTPLLIFIGISPAVAV--ASVT 58 Query: 124 LTLVTMVFATMLHAVTNHLVDAVLALILMVGGVTGAQFG 162 + F+ L ++D +LAL+L+ GGV G G Sbjct: 59 SHMAASSFSGALSYWHRRMLDPMLALVLLCGGVLGTALG 97