BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0070.0016.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767672.1| C4-dicarboxylate binding protein [Bradyrhizobiu... 488 e-136 ref|ZP_01549028.1| TRAP-T family transporter, DctP (periplasmic ... 318 8e-85 ref|ZP_01229050.1| TRAP-T family transporter, DctP [Aurantimonas... 315 6e-84 ref|YP_004609793.1| TRAP dicarboxylate transporter subunit DctP ... 306 3e-81 gb|EGP54981.1| C4-dicarboxylate-binding protein [Agrobacterium t... 303 2e-80 >ref|NP_767672.1| C4-dicarboxylate binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46297.1| bll1032 [Bradyrhizobium japonicum USDA 110] Length = 331 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 236/329 (71%), Positives = 273/329 (82%) Query: 1 VYRRAGLSRITMLAVALSWAAVPASAFAREFRTADTQNEDYPTVQALNYMDRLIAERTAG 60 V RA LSR ++ +AL +A SA AREFR ADTQ EDYPTVQAL YM LIAERT G Sbjct: 3 VLNRAELSRTGVIFIALLFAICATSAVAREFRAADTQTEDYPTVQALRYMGALIAERTGG 62 Query: 61 RHRIVVFHSRQLGEERETLEQTRAGAIDLNRTNVALIGTMVPSVNVLAMPFLFRSPEHLQ 120 RH I VFHSRQLGEE+ET+EQTRAGAIDLNRTNVALIG VP++NVLAMPFLFRS EH+Q Sbjct: 63 RHEIKVFHSRQLGEEKETIEQTRAGAIDLNRTNVALIGNFVPAMNVLAMPFLFRSIEHMQ 122 Query: 121 NVLDGPIGSEILNSLGAHGFVGLAFYDSGARSIYNSVHPVHSLDDVKGLRLRVQQSERMS 180 VLDGPIGSEIL S +GFVGLAFYDSGARSIYN PV S+ D++GLR+RVQQSE MS Sbjct: 123 KVLDGPIGSEILGSFEPYGFVGLAFYDSGARSIYNGARPVKSIADLRGLRIRVQQSELMS 182 Query: 181 DVMRALGAQPVQMPYGQVLTGFATGLIDGAENNWASFVTTGHYKHARYYTLTQHTFSPDV 240 ++MR+LGA+P++MPYGQVL G A LIDGAENNW SFVTT HYKHA Y LT+HT SP+V Sbjct: 183 EMMRSLGAEPIEMPYGQVLAGLANHLIDGAENNWPSFVTTDHYKHAGYLALTEHTMSPEV 242 Query: 241 LLMSQKAWASLSPEEQAIFREAAQRSSVYMRERWRELEERSRKQAELAGVEIVTDIDRKP 300 L++S KAW+SLS ++Q IFREAAQRSS +MRE+WR+LEE+S+++AE AGV IV DIDRKP Sbjct: 243 LVISLKAWSSLSADDQTIFREAAQRSSRFMREKWRDLEEQSQRKAEEAGVTIVRDIDRKP 302 Query: 301 FEAAMAGIYARAERDPATSALIERIRNME 329 FE AMA IYA+A RDPA +ALIERIR +E Sbjct: 303 FEGAMAAIYAKAGRDPAAAALIERIRKVE 331 >ref|ZP_01549028.1| TRAP-T family transporter, DctP (periplasmic binding) subunit [Stappia aggregata IAM 12614] gb|EAV42270.1| TRAP-T family transporter, DctP (periplasmic binding) subunit [Stappia aggregata IAM 12614] Length = 323 Score = 318 bits (815), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 144/302 (47%), Positives = 211/302 (69%), Gaps = 2/302 (0%) Query: 27 FARE--FRTADTQNEDYPTVQALNYMDRLIAERTAGRHRIVVFHSRQLGEERETLEQTRA 84 FA E +++DT + YPTV+A+ M +L+ ERT GR + VFHS QLGEE++T+EQT+ Sbjct: 19 FACEVTLKSSDTHPDGYPTVEAVKQMGKLLEERTDGRICVEVFHSAQLGEEKDTIEQTKF 78 Query: 85 GAIDLNRTNVALIGTMVPSVNVLAMPFLFRSPEHLQNVLDGPIGSEILNSLGAHGFVGLA 144 G IDLNR ++ +V V+++P++F+ +H+ V+DGPIG EIL + HG+VGLA Sbjct: 79 GVIDLNRVSMGPFNNLVEETKVVSLPYIFKGVDHMHTVMDGPIGEEILAAFEPHGYVGLA 138 Query: 145 FYDSGARSIYNSVHPVHSLDDVKGLRLRVQQSERMSDVMRALGAQPVQMPYGQVLTGFAT 204 FYD G+RS YN V P+ S++D++G+++RV QS+ D+M ALGA MPYG+V + T Sbjct: 139 FYDGGSRSFYNKVKPIKSIEDLEGMKVRVMQSDIFVDMMSALGANATPMPYGEVYSSIQT 198 Query: 205 GLIDGAENNWASFVTTGHYKHARYYTLTQHTFSPDVLLMSQKAWASLSPEEQAIFREAAQ 264 G+IDGAENNW S+ ++GH++ A YYTL +H P+VL+MS+K+W LSPE+QA R+AA+ Sbjct: 199 GVIDGAENNWPSYESSGHFEVAGYYTLDEHLIVPEVLVMSKKSWDKLSPEDQAAVRQAAK 258 Query: 265 RSSVYMRERWRELEERSRKQAELAGVEIVTDIDRKPFEAAMAGIYARAERDPATSALIER 324 S +MRE+W+ E+ S ++ AGVE+VT+ID++PF AAM +Y + L+ R Sbjct: 259 DSVPFMREQWQAREKASEEKVRAAGVEVVTEIDKEPFMAAMDSVYEKHVTSEKLKDLVAR 318 Query: 325 IR 326 IR Sbjct: 319 IR 320 >ref|ZP_01229050.1| TRAP-T family transporter, DctP [Aurantimonas manganoxydans SI85-9A1] gb|EAS48420.1| TRAP-T family transporter, DctP [Aurantimonas manganoxydans SI85-9A1] Length = 329 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 149/317 (47%), Positives = 208/317 (65%) Query: 13 LAVALSWAAVPASAFAREFRTADTQNEDYPTVQALNYMDRLIAERTAGRHRIVVFHSRQL 72 LA L+ AA SA R++DT + YPTV+A+ YM L+ ERT GR I V+HS QL Sbjct: 13 LATMLAGAATAVSAQETLLRSSDTHPDGYPTVEAVKYMGELVKERTDGRIGIEVYHSAQL 72 Query: 73 GEERETLEQTRAGAIDLNRTNVALIGTMVPSVNVLAMPFLFRSPEHLQNVLDGPIGSEIL 132 GEE++T+EQT+ G IDLNR ++ +V V+++P++FRS +H+ V+DGPIG EIL Sbjct: 73 GEEKDTIEQTQFGVIDLNRVSMGPFNNIVEETQVVSLPYIFRSIDHMHKVMDGPIGDEIL 132 Query: 133 NSLGAHGFVGLAFYDSGARSIYNSVHPVHSLDDVKGLRLRVQQSERMSDVMRALGAQPVQ 192 + H +GLA+YD GARS YNS P+ S+DD+KGL+ RV QS+ D++ ALG Sbjct: 133 AAFEPHDLIGLAYYDGGARSFYNSEKPIKSMDDLKGLKFRVMQSDIFVDMVNALGGNATP 192 Query: 193 MPYGQVLTGFATGLIDGAENNWASFVTTGHYKHARYYTLTQHTFSPDVLLMSQKAWASLS 252 MPYG+V + TG+I+GAENNW SF ++ H++ A++YTL +H P+VL+MS+K+W LS Sbjct: 193 MPYGEVYSSIQTGVIEGAENNWPSFESSKHFEVAKHYTLDEHLIVPEVLVMSKKSWEKLS 252 Query: 253 PEEQAIFREAAQRSSVYMRERWRELEERSRKQAELAGVEIVTDIDRKPFEAAMAGIYARA 312 PE+Q I R AA+ S MRE W+ E S K AGVE+V DID++PF AM +Y + Sbjct: 253 PEDQEIVRTAAKESVTKMRELWQAREAESEKMVREAGVEVVKDIDKQPFIDAMKPVYEKY 312 Query: 313 ERDPATSALIERIRNME 329 + L+ RI+ E Sbjct: 313 VTNDKLKDLVARIQATE 329 >ref|YP_004609793.1| TRAP dicarboxylate transporter subunit DctP [Mesorhizobium opportunistum WSM2075] gb|AEH85699.1| TRAP dicarboxylate transporter, DctP subunit [Mesorhizobium opportunistum WSM2075] Length = 325 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 147/320 (45%), Positives = 212/320 (66%), Gaps = 1/320 (0%) Query: 7 LSRITMLAVALSWAAVPASAFAREFRTADTQNEDYPTVQALNYMDRLIAERTAGRHRIVV 66 S++T + A + + R+ADT + YPTV+A+ YM LI +RT GR+ + V Sbjct: 4 FSKLTAVTFAFGSLLIGIANAETVLRSADTHPDGYPTVEAVKYMGELIKQRTDGRYSVEV 63 Query: 67 FHSRQLGEERETLEQTRAGAIDLNRTNVALIGTMVPSVNVLAMPFLFRSPEHLQNVLDGP 126 +HS QLGEE++T+EQT+ G IDLNR ++ +VP V ++P++FRS +H+++V+DGP Sbjct: 64 YHSAQLGEEKDTIEQTQTGVIDLNRVSMGPFNGIVPETAVPSLPYIFRSVDHMRHVMDGP 123 Query: 127 IGSEILNSLGAHGFVGLAFYDSGARSIYNSVHPVHSLDDVKGLRLRVQQSERMSDVMRAL 186 IG EIL + AH VGLAFYDSGARS YN+ + S+ D+KG++ RV QS+ D++ AL Sbjct: 124 IGDEILKAFEAHDLVGLAFYDSGARSFYNTKKDIASMADMKGMKFRVIQSDVFVDMVNAL 183 Query: 187 GAQPVQMPYGQVLTGFATGLIDGAENNWASFVTTGHYKHARYYTLTQHTFSPDVLLMSQK 246 GA M YG+V + TG+IDGAENNW SF + HY+ A++YT+ QH P+VL+M++ Sbjct: 184 GANATPMAYGEVYSALQTGVIDGAENNWPSFESAKHYEVAKHYTMDQHQIVPEVLVMAKA 243 Query: 247 AWASLSPEEQAIFREAAQRSSVYMRERWRELEERSRKQAELAGVEIVTDIDRKPFEAAMA 306 +W LSPE+QAI R+AA+ S V MRE W E++SR E AGV+ V++ID++P AM Sbjct: 244 SWDKLSPEDQAIVRQAAKDSVVKMRELWDAQEKKSRDIVEAAGVK-VSEIDKQPLIDAMK 302 Query: 307 GIYARAERDPATSALIERIR 326 +Y + PA L RI+ Sbjct: 303 PVYDKYLSTPALKDLAARIQ 322 >gb|EGP54981.1| C4-dicarboxylate-binding protein [Agrobacterium tumefaciens F2] Length = 325 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 141/318 (44%), Positives = 210/318 (66%), Gaps = 3/318 (0%) Query: 11 TMLAVALSWAAVPASAFARE--FRTADTQNEDYPTVQALNYMDRLIAERTAGRHRIVVFH 68 +M+ VA+ A SA A+E R+AD + YPTV+A+ YM L++ER+ GR ++ V + Sbjct: 6 SMMCVAMGIALAGVSAKAQEITLRSADIHPDGYPTVEAVKYMGDLLSERSNGRIKVQVMN 65 Query: 69 SRQLGEERETLEQTRAGAIDLNRTNVALIGTMVPSVNVLAMPFLFRSPEHLQNVLDGPIG 128 + LG E++T+EQTR G ID+NR N A +V VL +PFLFRS EH+ N +DGPIG Sbjct: 66 NSVLGGEKDTIEQTRFGVIDMNRVNAAPFNNLVKETTVLGLPFLFRSTEHMHNTVDGPIG 125 Query: 129 SEILNSLGAHGFVGLAFYDSGARSIYNSVHPVHSLDDVKGLRLRVQQSERMSDVMRALGA 188 E+L + HG +GLAFYDSGARS Y + P+ L D+KGL++RVQQS+ +M+A GA Sbjct: 126 DEVLAAFEPHGLIGLAFYDSGARSFYTTKKPIEKLADLKGLKIRVQQSDLWISMMQAFGA 185 Query: 189 QPVQMPYGQVLTGFATGLIDGAENNWASFVTTGHYKHARYYTLTQHTFSPDVLLMSQKAW 248 P MP G+V + TG++DGAENNW S+ + HY+ A+ Y+LT+H+ +P++L+MS+ +W Sbjct: 186 NPTPMPMGEVYSSLETGVVDGAENNWPSYESARHYEVAKNYSLTEHSLNPEILVMSKVSW 245 Query: 249 ASLSPEEQAIFREAAQRSSVYMRERWRELEERSRKQAELAGVEIVTDIDRKPFEAAMAGI 308 LSPE+Q + R+AA+ S MRE W E+ S ++ GV ++ ++++ F AAM + Sbjct: 246 DKLSPEDQKLVRQAAKDSVGKMRELWSAREKASEEKVRAGGVNVIK-VNKEEFAAAMGPV 304 Query: 309 YARAERDPATSALIERIR 326 Y + DP L+ER++ Sbjct: 305 YDKFVTDPKMKDLLERVK 322