BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0070.0014.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774466.1| ABC transporter permease protein [Bradyrhizobiu... 569 e-160 ref|YP_001203128.1| high-affinity branched-chain amino acid ABC ... 546 e-153 ref|YP_001242868.1| putative high-affinity branched-chain amino ... 542 e-152 ref|NP_949059.1| putative branched-chain amino acid transport sy... 508 e-142 ref|YP_575707.1| inner-membrane translocator [Nitrobacter hambur... 507 e-141 >ref|NP_774466.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53091.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 339 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 300/340 (88%), Positives = 318/340 (93%), Gaps = 1/340 (0%) Query: 3 MSAAEEVEVPTEGQAVEAVPKRAMTLGYGTSLVVLAALVLIPLFVKNFIIFQMTMLLIYG 62 MSAAEEV V QAVEAVPKRAMTLG GTSLVVLAAL++ P+FVKNFIIFQMTMLLIYG Sbjct: 1 MSAAEEV-VAEGHQAVEAVPKRAMTLGTGTSLVVLAALLIAPVFVKNFIIFQMTMLLIYG 59 Query: 63 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILMEHAGMNYALTLPIAGVICFGFGFLF 122 LAVLALNILTGGSGQFSLGQSAFYAVGAYT+A+LMEH +NYALTLP+AGV+CFGFGFLF Sbjct: 60 LAVLALNILTGGSGQFSLGQSAFYAVGAYTTAVLMEHFNINYALTLPVAGVVCFGFGFLF 119 Query: 123 GQPALRLSGVYLALATFALATAMPQLLKLGYFEHWTGGVQGLVVTKPDAPFGLPLSQDMW 182 GQPALRLSGVYLALATFALATAMPQLLKL + EHWTGGVQGLVVTKPDAPFGLP+SQDMW Sbjct: 120 GQPALRLSGVYLALATFALATAMPQLLKLNFLEHWTGGVQGLVVTKPDAPFGLPMSQDMW 179 Query: 183 LYYFTLVVTIAIYVASVNLLRSRSGRAFMAIRDNEIAASAMGVDVALYKTLAFGVSAGIT 242 LYYFTLVV IAIY+ SVNLLRSRSGRAFMAIRDNEIAASAMGVDVALYKTLAFGVSA IT Sbjct: 180 LYYFTLVVVIAIYIFSVNLLRSRSGRAFMAIRDNEIAASAMGVDVALYKTLAFGVSAAIT 239 Query: 243 GVAGGLGAIAVQFVAPDGYTIQLAISLFLGMVVGGVGWLPGSIVGSAFIIFVPNIAEGIS 302 G+AG LGAIAVQFVAPD YTI LAISLFLGMVVGGVGWLPGSIVG+AFIIFVPNIAEGIS Sbjct: 240 GIAGSLGAIAVQFVAPDSYTITLAISLFLGMVVGGVGWLPGSIVGAAFIIFVPNIAEGIS 299 Query: 303 KGLSGAVFGVLLFLVIFLVPHGARQVAIVAHQLAAKFKKN 342 KGLSGAVFGVLLF VI+LVPHGARQ+AI+ QLA + +KN Sbjct: 300 KGLSGAVFGVLLFAVIYLVPHGARQIAILGQQLAGRLRKN 339 >ref|YP_001203128.1| high-affinity branched-chain amino acid ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL74891.1| Putative high-affinity branched-chain amino acid transport system permease protein livM (ABC superfamily, membrane) [Bradyrhizobium sp. ORS 278] Length = 338 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 297/340 (87%), Positives = 316/340 (92%), Gaps = 2/340 (0%) Query: 3 MSAAEEVEVPTEGQAVEAVPKRAMTLGYGTSLVVLAALVLIPLFVKNFIIFQMTMLLIYG 62 MSA EE+ ++ AVEAVPKRAMTL GT+ VV+ L+++PLFVKNFIIFQMTMLLIYG Sbjct: 1 MSAVEEIA--SQAPAVEAVPKRAMTLSSGTTFVVVLLLLIVPLFVKNFIIFQMTMLLIYG 58 Query: 63 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILMEHAGMNYALTLPIAGVICFGFGFLF 122 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILME +NYALTLPIAGVICFGFGFLF Sbjct: 59 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILMEQYNVNYALTLPIAGVICFGFGFLF 118 Query: 123 GQPALRLSGVYLALATFALATAMPQLLKLGYFEHWTGGVQGLVVTKPDAPFGLPLSQDMW 182 GQPALRLSGVYLALATFALATAMPQ+LKLG+FEHWTGGVQGLVVTKPDAPFGLP+SQDMW Sbjct: 119 GQPALRLSGVYLALATFALATAMPQILKLGFFEHWTGGVQGLVVTKPDAPFGLPMSQDMW 178 Query: 183 LYYFTLVVTIAIYVASVNLLRSRSGRAFMAIRDNEIAASAMGVDVALYKTLAFGVSAGIT 242 LYYFTL +TIAIY+ SVNLLRSRSGRAFMAIRDNEIAASAMG+DVA YKTLAFGVSAGIT Sbjct: 179 LYYFTLAITIAIYIFSVNLLRSRSGRAFMAIRDNEIAASAMGIDVATYKTLAFGVSAGIT 238 Query: 243 GVAGGLGAIAVQFVAPDGYTIQLAISLFLGMVVGGVGWLPGSIVGSAFIIFVPNIAEGIS 302 GVAGGLGAIAVQFVAPD YTI LAISLFLGMVVGGVGWLPGS VG+AFIIFVPNIAEGIS Sbjct: 239 GVAGGLGAIAVQFVAPDSYTIVLAISLFLGMVVGGVGWLPGSFVGAAFIIFVPNIAEGIS 298 Query: 303 KGLSGAVFGVLLFLVIFLVPHGARQVAIVAHQLAAKFKKN 342 KGLSGAVFGVLLFLVIFLVPHG+RQVA+VA QL K +KN Sbjct: 299 KGLSGAVFGVLLFLVIFLVPHGSRQVAMVAQQLLGKLRKN 338 >ref|YP_001242868.1| putative high-affinity branched-chain amino acid transport system permease livM [Bradyrhizobium sp. BTAi1] gb|ABQ38962.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Bradyrhizobium sp. BTAi1] Length = 338 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 294/340 (86%), Positives = 316/340 (92%), Gaps = 2/340 (0%) Query: 3 MSAAEEVEVPTEGQAVEAVPKRAMTLGYGTSLVVLAALVLIPLFVKNFIIFQMTMLLIYG 62 MSA EEV ++ AVEAVPKRAMTL GT+ VV+ L+++PLFVKNFIIFQMTMLLIYG Sbjct: 1 MSAIEEVG--SQAPAVEAVPKRAMTLSSGTAFVVVLLLLVVPLFVKNFIIFQMTMLLIYG 58 Query: 63 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILMEHAGMNYALTLPIAGVICFGFGFLF 122 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILME +NYALTLP+AGV+CFGFGFLF Sbjct: 59 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILMEQYNINYALTLPVAGVVCFGFGFLF 118 Query: 123 GQPALRLSGVYLALATFALATAMPQLLKLGYFEHWTGGVQGLVVTKPDAPFGLPLSQDMW 182 GQPALRLSGVYLALATFALATAMPQ+LKLG+FEHWTGGVQGLVVTKPDAPFGLP+SQDMW Sbjct: 119 GQPALRLSGVYLALATFALATAMPQILKLGFFEHWTGGVQGLVVTKPDAPFGLPMSQDMW 178 Query: 183 LYYFTLVVTIAIYVASVNLLRSRSGRAFMAIRDNEIAASAMGVDVALYKTLAFGVSAGIT 242 LYYFTL +TIAIY+ SVNLLRSRSGRAFMAIRDNEIAASAMG+DVA YKTLAFGVSAGIT Sbjct: 179 LYYFTLAITIAIYIFSVNLLRSRSGRAFMAIRDNEIAASAMGIDVATYKTLAFGVSAGIT 238 Query: 243 GVAGGLGAIAVQFVAPDGYTIQLAISLFLGMVVGGVGWLPGSIVGSAFIIFVPNIAEGIS 302 GVAGGLGAIAVQFVAPD YTI LAISLFLGMVVGGVGWLPGS +G+AFIIFVPNIAEGIS Sbjct: 239 GVAGGLGAIAVQFVAPDSYTIVLAISLFLGMVVGGVGWLPGSFIGAAFIIFVPNIAEGIS 298 Query: 303 KGLSGAVFGVLLFLVIFLVPHGARQVAIVAHQLAAKFKKN 342 KGLSGAVFGVLLFL+IFLVPHGARQVA+VA QL +K +K Sbjct: 299 KGLSGAVFGVLLFLIIFLVPHGARQVAMVAQQLLSKVRKT 338 >ref|NP_949059.1| putative branched-chain amino acid transport system permease [Rhodopseudomonas palustris CGA009] emb|CAE29163.1| putative branched-chain amino acid transport system permease protein [Rhodopseudomonas palustris CGA009] Length = 339 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 269/340 (79%), Positives = 296/340 (87%), Gaps = 2/340 (0%) Query: 3 MSAAEEVEVPTEGQAVEAVPKRAMTLGYGTSLVVLAALVLIPLFVKNFIIFQMTMLLIYG 62 MSA +EV + Q VE PK+ M LG S+VV+ L L PL KNFIIFQMTM+LIY Sbjct: 1 MSALQEVV--NDTQPVETTPKKYMALGNTASIVVVLLLCLAPLVAKNFIIFQMTMVLIYA 58 Query: 63 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILMEHAGMNYALTLPIAGVICFGFGFLF 122 +AVLALNILTGGSGQFSLGQSAFYAVGAYTSAILME+ G+NYALTLPI+G ICF G+LF Sbjct: 59 IAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILMENFGVNYALTLPISGAICFICGYLF 118 Query: 123 GQPALRLSGVYLALATFALATAMPQLLKLGYFEHWTGGVQGLVVTKPDAPFGLPLSQDMW 182 G PALRLSG+YLALATFALATAMPQLLKL YFEHWTGGVQGLV+TKPDAPFGLP+SQDMW Sbjct: 119 GLPALRLSGIYLALATFALATAMPQLLKLHYFEHWTGGVQGLVITKPDAPFGLPMSQDMW 178 Query: 183 LYYFTLVVTIAIYVASVNLLRSRSGRAFMAIRDNEIAASAMGVDVALYKTLAFGVSAGIT 242 LYYF LVV++AIYVASVNLL+SRSGRA MAIRDNEIAASAMGVDVA YKTLAFG+SAGIT Sbjct: 179 LYYFVLVVSMAIYVASVNLLKSRSGRAMMAIRDNEIAASAMGVDVARYKTLAFGISAGIT 238 Query: 243 GVAGGLGAIAVQFVAPDGYTIQLAISLFLGMVVGGVGWLPGSIVGSAFIIFVPNIAEGIS 302 GVAGGLGAIAVQFVAPD YTIQLAI+LFLGMVVGGVGWLPGSIVG+AFI+FVPNIAEG S Sbjct: 239 GVAGGLGAIAVQFVAPDSYTIQLAIALFLGMVVGGVGWLPGSIVGAAFIVFVPNIAEGFS 298 Query: 303 KGLSGAVFGVLLFLVIFLVPHGARQVAIVAHQLAAKFKKN 342 KGLSGAVFGV+L L+IFL+PHG+RQ+A K + Sbjct: 299 KGLSGAVFGVILVLIIFLLPHGSRQIAYTVQNWVHKLGRR 338 >ref|YP_575707.1| inner-membrane translocator [Nitrobacter hamburgensis X14] gb|ABE61247.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Nitrobacter hamburgensis X14] Length = 345 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 260/340 (76%), Positives = 293/340 (86%), Gaps = 2/340 (0%) Query: 3 MSAAEEVEVPTEGQAVEAVPKRAMTLGYGTSLVVLAALVLIPLFVKNFIIFQMTMLLIYG 62 MSA E AV+ +A+TLG TS+V+L L+ +PLF KNFIIFQ+T +LIYG Sbjct: 1 MSANRESA--AGAPAVDTGSGQAVTLGTATSIVILLLLLAVPLFFKNFIIFQLTTVLIYG 58 Query: 63 LAVLALNILTGGSGQFSLGQSAFYAVGAYTSAILMEHAGMNYALTLPIAGVICFGFGFLF 122 +AVLALNILTGGSGQFSLG SAFYA+GAYTSAIL+EHAGMNYALTLPI+GV+CF GFLF Sbjct: 59 IAVLALNILTGGSGQFSLGHSAFYALGAYTSAILIEHAGMNYALTLPISGVVCFAMGFLF 118 Query: 123 GQPALRLSGVYLALATFALATAMPQLLKLGYFEHWTGGVQGLVVTKPDAPFGLPLSQDMW 182 G PALRLSGVYLALATFALA A PQLLKLG E WTGGVQGL V KPDAPFGLP+SQD W Sbjct: 119 GLPALRLSGVYLALATFALAVATPQLLKLGVLEPWTGGVQGLTVDKPDAPFGLPVSQDAW 178 Query: 183 LYYFTLVVTIAIYVASVNLLRSRSGRAFMAIRDNEIAASAMGVDVALYKTLAFGVSAGIT 242 LYYFTLVV IAIY+ASVNLL SRSGRA MAIRDNEIAASAMG++VALYKTLAFG+SAGIT Sbjct: 179 LYYFTLVVAIAIYIASVNLLSSRSGRAMMAIRDNEIAASAMGINVALYKTLAFGISAGIT 238 Query: 243 GVAGGLGAIAVQFVAPDGYTIQLAISLFLGMVVGGVGWLPGSIVGSAFIIFVPNIAEGIS 302 G+AGGLGAIAVQ+VAPD +TIQLAI+LFLGMVVGGVGWLPGSIVG+AFI+F+PN+AE +S Sbjct: 239 GIAGGLGAIAVQYVAPDSFTIQLAIALFLGMVVGGVGWLPGSIVGAAFIVFIPNVAESVS 298 Query: 303 KGLSGAVFGVLLFLVIFLVPHGARQVAIVAHQLAAKFKKN 342 KGLSGAV G+LLF+VIFL P+GARQVA+ + FKKN Sbjct: 299 KGLSGAVSGILLFVVIFLAPNGARQVALAFQAMIGGFKKN 338