BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0070.0008.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774462.1| transcriptional regulator [Bradyrhizobium japon...   208   2e-52
ref|YP_532098.1| IclR family transcriptional regulator [Rhodopse...   199   1e-49
ref|YP_485364.1| IclR family transcriptional regulator [Rhodopse...   196   1e-48
ref|YP_570678.1| IclR family transcriptional regulator [Rhodopse...   195   1e-48
ref|ZP_08628364.1| transcriptional regulator, IclR family [Brady...   195   2e-48

>ref|NP_774462.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53087.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 317

 Score =  208 bits (530), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 106/110 (96%)

Query: 1   MKRASKKAATDRNFVVALSRGLDVLRAFQPNDGLLGNQEIAARTKLPKPTISRLTYTLTK 60
           MKR  KK ATDRNFVVALSRGLDVLRAFQP+DGLLGNQEIAART LPKPT+SRLTYTLTK
Sbjct: 30  MKRTGKKTATDRNFVVALSRGLDVLRAFQPSDGLLGNQEIAARTNLPKPTVSRLTYTLTK 89

Query: 61  LGYLTPVPKFEKYQLAPSAMALGYAALANLGVRHLSEPYREEVMRATGGA 110
           LGYLTPVP+FEKYQLAP+AMALGYAAL+NLGVRHLSEP+REEVMRATGGA
Sbjct: 90  LGYLTPVPRFEKYQLAPAAMALGYAALSNLGVRHLSEPFREEVMRATGGA 139


>ref|YP_532098.1| IclR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gb|ABD87779.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris
           BisB18]
          Length = 292

 Score =  199 bits (505), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/110 (86%), Positives = 102/110 (92%)

Query: 1   MKRASKKAATDRNFVVALSRGLDVLRAFQPNDGLLGNQEIAARTKLPKPTISRLTYTLTK 60
           MKR  KK ATDRNFVVALSRGLDVLRAF PNDGLLGNQEIAART LPKPTISRLTYTL K
Sbjct: 4   MKRPGKKVATDRNFVVALSRGLDVLRAFHPNDGLLGNQEIAARTNLPKPTISRLTYTLCK 63

Query: 61  LGYLTPVPKFEKYQLAPSAMALGYAALANLGVRHLSEPYREEVMRATGGA 110
           LGYLT VP+FEKYQLAP+A+A+GYAALANLG+RHLSEP+REE+MR TGGA
Sbjct: 64  LGYLTQVPRFEKYQLAPAALAIGYAALANLGIRHLSEPFREELMRQTGGA 113


>ref|YP_485364.1| IclR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gb|ABD06453.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris
           HaA2]
          Length = 292

 Score =  196 bits (497), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/110 (86%), Positives = 105/110 (95%)

Query: 1   MKRASKKAATDRNFVVALSRGLDVLRAFQPNDGLLGNQEIAARTKLPKPTISRLTYTLTK 60
           MKR  KKAATDR+FVVALSRGL+VLRAF PNDGLLGNQEIAARTKLPKPTISRLTYTLTK
Sbjct: 1   MKRPPKKAATDRSFVVALSRGLEVLRAFGPNDGLLGNQEIAARTKLPKPTISRLTYTLTK 60

Query: 61  LGYLTPVPKFEKYQLAPSAMALGYAALANLGVRHLSEPYREEVMRATGGA 110
           LGYLT VP+FEKYQLAP+AM+LGYAALANLGVRHLS+P+R+E+M+ TGGA
Sbjct: 61  LGYLTQVPRFEKYQLAPAAMSLGYAALANLGVRHLSQPFRDELMQQTGGA 110


>ref|YP_570678.1| IclR family transcriptional regulator [Rhodopseudomonas palustris
           BisB5]
 gb|ABE40777.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris
           BisB5]
          Length = 292

 Score =  195 bits (496), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/110 (85%), Positives = 105/110 (95%)

Query: 1   MKRASKKAATDRNFVVALSRGLDVLRAFQPNDGLLGNQEIAARTKLPKPTISRLTYTLTK 60
           MKR +KK ATDR+FVVALSRGL+VLRAF PNDGLLGNQEIAARTKLPKPTISRLTYTLTK
Sbjct: 1   MKRPTKKTATDRSFVVALSRGLEVLRAFGPNDGLLGNQEIAARTKLPKPTISRLTYTLTK 60

Query: 61  LGYLTPVPKFEKYQLAPSAMALGYAALANLGVRHLSEPYREEVMRATGGA 110
           LGYLT VP+FEKYQLAP+AM+LGYAALANLGVRHLS+P+R+E+M+ TGGA
Sbjct: 61  LGYLTQVPRFEKYQLAPAAMSLGYAALANLGVRHLSQPFRDELMQQTGGA 110


>ref|ZP_08628364.1| transcriptional regulator, IclR family [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP08867.1| transcriptional regulator, IclR family [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 292

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 105/110 (95%)

Query: 1   MKRASKKAATDRNFVVALSRGLDVLRAFQPNDGLLGNQEIAARTKLPKPTISRLTYTLTK 60
           MKR  KK ATDR+FV+ALSRGLDVLRAF+P+DGLLGNQEIAART LPKPTISRLTYTLTK
Sbjct: 1   MKRPPKKPATDRSFVIALSRGLDVLRAFRPSDGLLGNQEIAARTNLPKPTISRLTYTLTK 60

Query: 61  LGYLTPVPKFEKYQLAPSAMALGYAALANLGVRHLSEPYREEVMRATGGA 110
           LGYLTPVP+FEKYQLAP+AMALGY+ALAN+G+RHLS+PYR+++MR TGGA
Sbjct: 61  LGYLTPVPRFEKYQLAPAAMALGYSALANMGIRHLSDPYRDQLMRETGGA 110